data_5ZH4
#
_model_server_result.job_id            wMkEJEMfVMQTrQAyrLgC7g 
_model_server_result.datetime_utc      '2024-10-20 01:27:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zh4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":602}' 
#
_entry.id    5ZH4 
#
_exptl.entry_id    5ZH4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.327 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R)-6,8-dihydroxy-3-{[(2S,6R)-6-methyloxan-2-yl]methyl}-3,4-dihydro-1H-2-benzopyran-1-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZH4 
_cell.length_a            52.62 
_cell.length_b            126.04 
_cell.length_c            181.19 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZH4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
_chem_comp.formula           'C16 H20 O5' 
_chem_comp.formula_weight    292.327 
_chem_comp.id                9CC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R)-6,8-dihydroxy-3-{[(2S,6R)-6-methyloxan-2-yl]methyl}-3,4-dihydro-1H-2-benzopyran-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 9CC sing 1 n n 
O4 C8 9CC doub 2 n n 
C1 C2 9CC doub 3 n y 
C1 C9 9CC sing 4 n y 
C2 C3 9CC sing 5 n y 
C8 C9 9CC sing 6 n n 
C8 O3 9CC sing 7 n n 
C9 C5 9CC doub 8 n y 
O3 C7 9CC sing 9 n n 
C3 O2 9CC sing 10 n n 
C3 C4 9CC doub 11 n y 
C5 C4 9CC sing 12 n y 
C5 C6 9CC sing 13 n n 
C7 C6 9CC sing 14 n n 
C7 C10 9CC sing 15 n n 
C10 C11 9CC sing 16 n n 
C11 C15 9CC sing 17 n n 
C11 O5 9CC sing 18 n n 
C15 C14 9CC sing 19 n n 
O5 C12 9CC sing 20 n n 
C14 C13 9CC sing 21 n n 
C12 C13 9CC sing 22 n n 
C12 C16 9CC sing 23 n n 
C4 H1 9CC sing 24 n n 
C7 H2 9CC sing 25 n n 
C6 H3 9CC sing 26 n n 
C6 H4 9CC sing 27 n n 
C2 H5 9CC sing 28 n n 
C10 H6 9CC sing 29 n n 
C10 H7 9CC sing 30 n n 
C11 H8 9CC sing 31 n n 
C12 H9 9CC sing 32 n n 
C13 H10 9CC sing 33 n n 
C13 H11 9CC sing 34 n n 
C14 H12 9CC sing 35 n n 
C14 H13 9CC sing 36 n n 
C15 H14 9CC sing 37 n n 
C15 H15 9CC sing 38 n n 
C16 H16 9CC sing 39 n n 
C16 H17 9CC sing 40 n n 
C16 H18 9CC sing 41 n n 
O2 H19 9CC sing 42 n n 
O1 H20 9CC sing 43 n n 
#
_atom_sites.entry_id                     5ZH4 
_atom_sites.fract_transf_matrix[1][1]    0.019004 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007934 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LYS A 1 601 601 LYS LYS . 
D 3 9CC A 1 602 602 9CC K27 . 
E 4 CL A 1 603 1 CL CL . 
F 4 CL A 1 604 3 CL CL . 
G 2 LYS B 1 601 601 LYS LYS . 
H 3 9CC B 1 602 602 9CC K27 . 
I 4 CL B 1 603 2 CL CL . 
J 4 CL B 1 604 4 CL CL . 
K 4 CL B 1 605 5 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9CC . . . H 3 2.128 9.072 -34.963 1 54.46 ? C1 9CC 602 B 1 
HETATM 2 C C8 9CC . . . H 3 3.638 10.904 -34.429 1 52.45 ? C8 9CC 602 B 1 
HETATM 3 C C4 9CC . . . H 3 0.448 9.849 -32.938 1 54.64 ? C4 9CC 602 B 1 
HETATM 4 C C3 9CC . . . H 3 0.127 8.726 -33.698 1 54.35 ? C3 9CC 602 B 1 
HETATM 5 C C7 9CC . . . H 3 3.354 11.935 -32.377 1 54.03 ? C7 9CC 602 B 1 
HETATM 6 C C6 9CC . . . H 3 1.875 11.7 -32.341 1 50.39 ? C6 9CC 602 B 1 
HETATM 7 C C2 9CC . . . H 3 0.977 8.35 -34.727 1 51.53 ? C2 9CC 602 B 1 
HETATM 8 C C5 9CC . . . H 3 1.612 10.59 -33.162 1 54.2 ? C5 9CC 602 B 1 
HETATM 9 C C9 9CC . . . H 3 2.48 10.183 -34.187 1 54.54 ? C9 9CC 602 B 1 
HETATM 10 C C10 9CC . . . H 3 3.755 13.289 -31.793 1 49.72 ? C10 9CC 602 B 1 
HETATM 11 C C11 9CC . . . H 3 3.295 13.421 -30.372 1 48.63 ? C11 9CC 602 B 1 
HETATM 12 C C12 9CC . . . H 3 5.136 12.437 -29.236 1 46.65 ? C12 9CC 602 B 1 
HETATM 13 C C13 9CC . . . H 3 5.439 13.784 -28.559 1 45.61 ? C13 9CC 602 B 1 
HETATM 14 C C14 9CC . . . H 3 5.118 14.882 -29.541 1 50.07 ? C14 9CC 602 B 1 
HETATM 15 O O3 9CC . . . H 3 3.734 12.025 -33.739 1 55.52 ? O3 9CC 602 B 1 
HETATM 16 C C15 9CC . . . H 3 3.676 14.762 -29.785 1 50.5 ? C15 9CC 602 B 1 
HETATM 17 C C16 9CC . . . H 3 5.267 11.294 -28.231 1 47.01 ? C16 9CC 602 B 1 
HETATM 18 O O5 9CC . . . H 3 3.836 12.358 -29.643 1 46.17 ? O5 9CC 602 B 1 
HETATM 19 O O4 9CC . . . H 3 4.545 10.532 -35.164 1 59.72 ? O4 9CC 602 B 1 
HETATM 20 O O2 9CC . . . H 3 -1.035 8.036 -33.431 1 51.55 ? O2 9CC 602 B 1 
HETATM 21 O O1 9CC . . . H 3 2.982 8.724 -35.959 1 54.69 ? O1 9CC 602 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#