data_5ZHJ # _model_server_result.job_id MRXzFqvARkZg8GgNyq7yPQ _model_server_result.datetime_utc '2024-10-18 16:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zhj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5ZHJ # _exptl.entry_id 5ZHJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.1 _cell.angle_gamma 90 _cell.entry_id 5ZHJ _cell.length_a 72.96 _cell.length_b 50.761 _cell.length_c 53.309 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 290 n n N HN1 SAH sing 291 n n N HN2 SAH sing 292 n n CA CB SAH sing 293 n n CA C SAH sing 294 n n CA HA SAH sing 295 n n CB CG SAH sing 296 n n CB HB1 SAH sing 297 n n CB HB2 SAH sing 298 n n CG SD SAH sing 299 n n CG HG1 SAH sing 300 n n CG HG2 SAH sing 301 n n SD C5' SAH sing 302 n n C O SAH doub 303 n n C OXT SAH sing 304 n n OXT HXT SAH sing 305 n n C5' C4' SAH sing 306 n n C5' "H5'1" SAH sing 307 n n C5' "H5'2" SAH sing 308 n n C4' O4' SAH sing 309 n n C4' C3' SAH sing 310 n n C4' H4' SAH sing 311 n n O4' C1' SAH sing 312 n n C3' O3' SAH sing 313 n n C3' C2' SAH sing 314 n n C3' H3' SAH sing 315 n n O3' HO3' SAH sing 316 n n C2' O2' SAH sing 317 n n C2' C1' SAH sing 318 n n C2' H2' SAH sing 319 n n O2' HO2' SAH sing 320 n n C1' N9 SAH sing 321 n n C1' H1' SAH sing 322 n n N9 C8 SAH sing 323 n y N9 C4 SAH sing 324 n y C8 N7 SAH doub 325 n y C8 H8 SAH sing 326 n n N7 C5 SAH sing 327 n y C5 C6 SAH sing 328 n y C5 C4 SAH doub 329 n y C6 N6 SAH sing 330 n n C6 N1 SAH doub 331 n y N6 HN61 SAH sing 332 n n N6 HN62 SAH sing 333 n n N1 C2 SAH sing 334 n y C2 N3 SAH doub 335 n y C2 H2 SAH sing 336 n n N3 C4 SAH sing 337 n y # _atom_sites.entry_id 5ZHJ _atom_sites.fract_transf_matrix[1][1] 0.013706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001223 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 GOL A 1 302 1 GOL GOL . D 4 HOH A 1 401 150 HOH HOH . D 4 HOH A 2 402 173 HOH HOH . D 4 HOH A 3 403 239 HOH HOH . D 4 HOH A 4 404 80 HOH HOH . D 4 HOH A 5 405 180 HOH HOH . D 4 HOH A 6 406 252 HOH HOH . D 4 HOH A 7 407 160 HOH HOH . D 4 HOH A 8 408 165 HOH HOH . D 4 HOH A 9 409 114 HOH HOH . D 4 HOH A 10 410 36 HOH HOH . D 4 HOH A 11 411 94 HOH HOH . D 4 HOH A 12 412 42 HOH HOH . D 4 HOH A 13 413 71 HOH HOH . D 4 HOH A 14 414 162 HOH HOH . D 4 HOH A 15 415 251 HOH HOH . D 4 HOH A 16 416 143 HOH HOH . D 4 HOH A 17 417 52 HOH HOH . D 4 HOH A 18 418 159 HOH HOH . D 4 HOH A 19 419 207 HOH HOH . D 4 HOH A 20 420 12 HOH HOH . D 4 HOH A 21 421 117 HOH HOH . D 4 HOH A 22 422 140 HOH HOH . D 4 HOH A 23 423 35 HOH HOH . D 4 HOH A 24 424 128 HOH HOH . D 4 HOH A 25 425 171 HOH HOH . D 4 HOH A 26 426 234 HOH HOH . D 4 HOH A 27 427 54 HOH HOH . D 4 HOH A 28 428 230 HOH HOH . D 4 HOH A 29 429 139 HOH HOH . D 4 HOH A 30 430 11 HOH HOH . D 4 HOH A 31 431 4 HOH HOH . D 4 HOH A 32 432 191 HOH HOH . D 4 HOH A 33 433 27 HOH HOH . D 4 HOH A 34 434 7 HOH HOH . D 4 HOH A 35 435 231 HOH HOH . D 4 HOH A 36 436 16 HOH HOH . D 4 HOH A 37 437 50 HOH HOH . D 4 HOH A 38 438 204 HOH HOH . D 4 HOH A 39 439 61 HOH HOH . D 4 HOH A 40 440 85 HOH HOH . D 4 HOH A 41 441 148 HOH HOH . D 4 HOH A 42 442 236 HOH HOH . D 4 HOH A 43 443 76 HOH HOH . D 4 HOH A 44 444 194 HOH HOH . D 4 HOH A 45 445 13 HOH HOH . D 4 HOH A 46 446 18 HOH HOH . D 4 HOH A 47 447 3 HOH HOH . D 4 HOH A 48 448 98 HOH HOH . D 4 HOH A 49 449 62 HOH HOH . D 4 HOH A 50 450 212 HOH HOH . D 4 HOH A 51 451 217 HOH HOH . D 4 HOH A 52 452 73 HOH HOH . D 4 HOH A 53 453 158 HOH HOH . D 4 HOH A 54 454 200 HOH HOH . D 4 HOH A 55 455 8 HOH HOH . D 4 HOH A 56 456 240 HOH HOH . D 4 HOH A 57 457 250 HOH HOH . D 4 HOH A 58 458 109 HOH HOH . D 4 HOH A 59 459 34 HOH HOH . D 4 HOH A 60 460 192 HOH HOH . D 4 HOH A 61 461 116 HOH HOH . D 4 HOH A 62 462 243 HOH HOH . D 4 HOH A 63 463 23 HOH HOH . D 4 HOH A 64 464 242 HOH HOH . D 4 HOH A 65 465 15 HOH HOH . D 4 HOH A 66 466 2 HOH HOH . D 4 HOH A 67 467 89 HOH HOH . D 4 HOH A 68 468 32 HOH HOH . D 4 HOH A 69 469 29 HOH HOH . D 4 HOH A 70 470 70 HOH HOH . D 4 HOH A 71 471 238 HOH HOH . D 4 HOH A 72 472 86 HOH HOH . D 4 HOH A 73 473 138 HOH HOH . D 4 HOH A 74 474 182 HOH HOH . D 4 HOH A 75 475 145 HOH HOH . D 4 HOH A 76 476 225 HOH HOH . D 4 HOH A 77 477 22 HOH HOH . D 4 HOH A 78 478 24 HOH HOH . D 4 HOH A 79 479 104 HOH HOH . D 4 HOH A 80 480 59 HOH HOH . D 4 HOH A 81 481 38 HOH HOH . D 4 HOH A 82 482 167 HOH HOH . D 4 HOH A 83 483 170 HOH HOH . D 4 HOH A 84 484 10 HOH HOH . D 4 HOH A 85 485 118 HOH HOH . D 4 HOH A 86 486 187 HOH HOH . D 4 HOH A 87 487 216 HOH HOH . D 4 HOH A 88 488 19 HOH HOH . D 4 HOH A 89 489 40 HOH HOH . D 4 HOH A 90 490 122 HOH HOH . D 4 HOH A 91 491 169 HOH HOH . D 4 HOH A 92 492 201 HOH HOH . D 4 HOH A 93 493 47 HOH HOH . D 4 HOH A 94 494 69 HOH HOH . D 4 HOH A 95 495 233 HOH HOH . D 4 HOH A 96 496 90 HOH HOH . D 4 HOH A 97 497 120 HOH HOH . D 4 HOH A 98 498 185 HOH HOH . D 4 HOH A 99 499 161 HOH HOH . D 4 HOH A 100 500 82 HOH HOH . D 4 HOH A 101 501 247 HOH HOH . D 4 HOH A 102 502 205 HOH HOH . D 4 HOH A 103 503 249 HOH HOH . D 4 HOH A 104 504 151 HOH HOH . D 4 HOH A 105 505 209 HOH HOH . D 4 HOH A 106 506 111 HOH HOH . D 4 HOH A 107 507 223 HOH HOH . D 4 HOH A 108 508 144 HOH HOH . D 4 HOH A 109 509 222 HOH HOH . D 4 HOH A 110 510 168 HOH HOH . D 4 HOH A 111 511 58 HOH HOH . D 4 HOH A 112 512 125 HOH HOH . D 4 HOH A 113 513 142 HOH HOH . D 4 HOH A 114 514 226 HOH HOH . D 4 HOH A 115 515 241 HOH HOH . D 4 HOH A 116 516 115 HOH HOH . D 4 HOH A 117 517 181 HOH HOH . D 4 HOH A 118 518 133 HOH HOH . D 4 HOH A 119 519 199 HOH HOH . D 4 HOH A 120 520 105 HOH HOH . D 4 HOH A 121 521 123 HOH HOH . D 4 HOH A 122 522 102 HOH HOH . D 4 HOH A 123 523 119 HOH HOH . D 4 HOH A 124 524 147 HOH HOH . D 4 HOH A 125 525 176 HOH HOH . D 4 HOH A 126 526 66 HOH HOH . D 4 HOH A 127 527 79 HOH HOH . D 4 HOH A 128 528 110 HOH HOH . D 4 HOH A 129 529 107 HOH HOH . D 4 HOH A 130 530 132 HOH HOH . D 4 HOH A 131 531 63 HOH HOH . D 4 HOH A 132 532 166 HOH HOH . D 4 HOH A 133 533 179 HOH HOH . D 4 HOH A 134 534 72 HOH HOH . D 4 HOH A 135 535 232 HOH HOH . D 4 HOH A 136 536 131 HOH HOH . D 4 HOH A 137 537 219 HOH HOH . D 4 HOH A 138 538 178 HOH HOH . D 4 HOH A 139 539 155 HOH HOH . D 4 HOH A 140 540 137 HOH HOH . D 4 HOH A 141 541 235 HOH HOH . D 4 HOH A 142 542 149 HOH HOH . D 4 HOH A 143 543 177 HOH HOH . D 4 HOH A 144 544 141 HOH HOH . D 4 HOH A 145 545 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 6.014 -21.232 -15.795 1 43.39 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 6.227 -20.858 -14.383 1 42.33 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 4.936 -20.339 -13.751 1 36.24 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 4.794 -18.849 -14.021 1 32.67 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 3.711 -17.982 -12.824 1 28.43 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 6.792 -22.042 -13.568 1 46.47 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 6.374 -23.195 -13.84 1 49.59 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 7.617 -21.763 -12.672 1 46.04 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 4.721 -16.464 -12.594 1 24.53 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 5.409 -16.368 -11.218 1 21.91 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 4.431 -16.481 -10.232 1 21.22 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 6.348 -17.532 -10.933 1 21.94 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 7.607 -17.254 -11.557 1 22.07 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 6.461 -17.453 -9.41 1 19.89 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 7.4 -16.37 -8.972 1 19.89 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 5.021 -17.098 -9.045 1 18.21 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 4.148 -18.24 -8.592 1 16.57 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 3.029 -18.668 -9.198 1 19.37 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 2.5 -19.663 -8.462 1 19.34 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 3.262 -19.823 -7.37 1 17.57 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 3.17 -20.667 -6.324 1 15.33 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 2.175 -21.568 -6.338 1 16.28 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 4.067 -20.684 -5.337 1 14.12 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 5.142 -19.78 -5.378 1 14.48 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 5.214 -18.921 -6.499 1 16.64 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 4.291 -18.966 -7.467 1 13.9 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #