data_5ZHK # _model_server_result.job_id 4DYdePfEjt7PhhIs_FFHCQ _model_server_result.datetime_utc '2024-12-05 03:15:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5ZHK # _exptl.entry_id 5ZHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.559 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(4-{[cyclohexyl(ethyl)amino]methyl}phenyl)methyl]-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.56 _cell.angle_gamma 90 _cell.entry_id 5ZHK _cell.length_a 73.09 _cell.length_b 50.8 _cell.length_c 58.081 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H28 N4 O2 S' _chem_comp.formula_weight 424.559 _chem_comp.id 9D6 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(4-{[cyclohexyl(ethyl)amino]methyl}phenyl)methyl]-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAM 9D6 sing 1 n n CAM NBD 9D6 sing 2 n n CAJ CAL 9D6 sing 3 n n CAJ CAK 9D6 sing 4 n n CAL CAO 9D6 sing 5 n n CBC CAN 9D6 sing 6 n n CBC NBD 9D6 sing 7 n n CBC CAO 9D6 sing 8 n n CAN CAK 9D6 sing 9 n n NBD CAQ 9D6 sing 10 n n CAQ CAX 9D6 sing 11 n n CAX CAG 9D6 doub 12 n y CAX CAF 9D6 sing 13 n y CAG CAE 9D6 sing 14 n y CAF CAD 9D6 doub 15 n y CAE CAW 9D6 doub 16 n y CAD CAW 9D6 sing 17 n y CAW CAP 9D6 sing 18 n n CAP NAS 9D6 sing 19 n n NAS CAV 9D6 sing 20 n n OAB CAV 9D6 doub 21 n n OAC CAZ 9D6 doub 22 n n CAV CAY 9D6 sing 23 n n CAZ CBB 9D6 sing 24 n n CAZ NAT 9D6 sing 25 n n CAY CBB 9D6 sing 26 n y CAY CAI 9D6 doub 27 n y CBB CBA 9D6 doub 28 n y NAT CAH 9D6 sing 29 n n CAI SAU 9D6 sing 30 n y CBA SAU 9D6 sing 31 n y CBA NAR 9D6 sing 32 n n CAH NAR 9D6 doub 33 n n CAN H1 9D6 sing 34 n n CAN H2 9D6 sing 35 n n CAK H3 9D6 sing 36 n n CAK H4 9D6 sing 37 n n CAJ H5 9D6 sing 38 n n CAJ H6 9D6 sing 39 n n CAL H7 9D6 sing 40 n n CAL H8 9D6 sing 41 n n CAO H9 9D6 sing 42 n n CAO H10 9D6 sing 43 n n CBC H11 9D6 sing 44 n n CAM H13 9D6 sing 45 n n CAM H14 9D6 sing 46 n n CAA H15 9D6 sing 47 n n CAA H16 9D6 sing 48 n n CAA H17 9D6 sing 49 n n CAQ H18 9D6 sing 50 n n CAQ H19 9D6 sing 51 n n CAG H20 9D6 sing 52 n n CAE H21 9D6 sing 53 n n CAF H22 9D6 sing 54 n n CAD H23 9D6 sing 55 n n CAP H24 9D6 sing 56 n n CAP H25 9D6 sing 57 n n NAS H26 9D6 sing 58 n n CAH H27 9D6 sing 59 n n CAI H29 9D6 sing 60 n n NAT H30 9D6 sing 61 n n # _atom_sites.entry_id 5ZHK _atom_sites.fract_transf_matrix[1][1] 0.013682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9D6 A 1 301 1 9D6 DRG . C 3 HOH A 1 401 115 HOH HOH . C 3 HOH A 2 402 1 HOH HOH . C 3 HOH A 3 403 8 HOH HOH . C 3 HOH A 4 404 123 HOH HOH . C 3 HOH A 5 405 117 HOH HOH . C 3 HOH A 6 406 128 HOH HOH . C 3 HOH A 7 407 82 HOH HOH . C 3 HOH A 8 408 133 HOH HOH . C 3 HOH A 9 409 126 HOH HOH . C 3 HOH A 10 410 30 HOH HOH . C 3 HOH A 11 411 121 HOH HOH . C 3 HOH A 12 412 6 HOH HOH . C 3 HOH A 13 413 59 HOH HOH . C 3 HOH A 14 414 75 HOH HOH . C 3 HOH A 15 415 107 HOH HOH . C 3 HOH A 16 416 96 HOH HOH . C 3 HOH A 17 417 124 HOH HOH . C 3 HOH A 18 418 63 HOH HOH . C 3 HOH A 19 419 144 HOH HOH . C 3 HOH A 20 420 35 HOH HOH . C 3 HOH A 21 421 60 HOH HOH . C 3 HOH A 22 422 42 HOH HOH . C 3 HOH A 23 423 21 HOH HOH . C 3 HOH A 24 424 13 HOH HOH . C 3 HOH A 25 425 125 HOH HOH . C 3 HOH A 26 426 54 HOH HOH . C 3 HOH A 27 427 97 HOH HOH . C 3 HOH A 28 428 11 HOH HOH . C 3 HOH A 29 429 34 HOH HOH . C 3 HOH A 30 430 129 HOH HOH . C 3 HOH A 31 431 130 HOH HOH . C 3 HOH A 32 432 102 HOH HOH . C 3 HOH A 33 433 55 HOH HOH . C 3 HOH A 34 434 62 HOH HOH . C 3 HOH A 35 435 98 HOH HOH . C 3 HOH A 36 436 138 HOH HOH . C 3 HOH A 37 437 148 HOH HOH . C 3 HOH A 38 438 100 HOH HOH . C 3 HOH A 39 439 92 HOH HOH . C 3 HOH A 40 440 70 HOH HOH . C 3 HOH A 41 441 143 HOH HOH . C 3 HOH A 42 442 10 HOH HOH . C 3 HOH A 43 443 51 HOH HOH . C 3 HOH A 44 444 61 HOH HOH . C 3 HOH A 45 445 131 HOH HOH . C 3 HOH A 46 446 79 HOH HOH . C 3 HOH A 47 447 52 HOH HOH . C 3 HOH A 48 448 20 HOH HOH . C 3 HOH A 49 449 77 HOH HOH . C 3 HOH A 50 450 95 HOH HOH . C 3 HOH A 51 451 135 HOH HOH . C 3 HOH A 52 452 15 HOH HOH . C 3 HOH A 53 453 151 HOH HOH . C 3 HOH A 54 454 40 HOH HOH . C 3 HOH A 55 455 49 HOH HOH . C 3 HOH A 56 456 19 HOH HOH . C 3 HOH A 57 457 141 HOH HOH . C 3 HOH A 58 458 81 HOH HOH . C 3 HOH A 59 459 3 HOH HOH . C 3 HOH A 60 460 37 HOH HOH . C 3 HOH A 61 461 27 HOH HOH . C 3 HOH A 62 462 76 HOH HOH . C 3 HOH A 63 463 73 HOH HOH . C 3 HOH A 64 464 84 HOH HOH . C 3 HOH A 65 465 33 HOH HOH . C 3 HOH A 66 466 87 HOH HOH . C 3 HOH A 67 467 26 HOH HOH . C 3 HOH A 68 468 105 HOH HOH . C 3 HOH A 69 469 57 HOH HOH . C 3 HOH A 70 470 36 HOH HOH . C 3 HOH A 71 471 146 HOH HOH . C 3 HOH A 72 472 83 HOH HOH . C 3 HOH A 73 473 58 HOH HOH . C 3 HOH A 74 474 7 HOH HOH . C 3 HOH A 75 475 47 HOH HOH . C 3 HOH A 76 476 80 HOH HOH . C 3 HOH A 77 477 139 HOH HOH . C 3 HOH A 78 478 28 HOH HOH . C 3 HOH A 79 479 14 HOH HOH . C 3 HOH A 80 480 68 HOH HOH . C 3 HOH A 81 481 48 HOH HOH . C 3 HOH A 82 482 69 HOH HOH . C 3 HOH A 83 483 93 HOH HOH . C 3 HOH A 84 484 25 HOH HOH . C 3 HOH A 85 485 112 HOH HOH . C 3 HOH A 86 486 108 HOH HOH . C 3 HOH A 87 487 66 HOH HOH . C 3 HOH A 88 488 4 HOH HOH . C 3 HOH A 89 489 45 HOH HOH . C 3 HOH A 90 490 44 HOH HOH . C 3 HOH A 91 491 113 HOH HOH . C 3 HOH A 92 492 110 HOH HOH . C 3 HOH A 93 493 53 HOH HOH . C 3 HOH A 94 494 46 HOH HOH . C 3 HOH A 95 495 132 HOH HOH . C 3 HOH A 96 496 22 HOH HOH . C 3 HOH A 97 497 86 HOH HOH . C 3 HOH A 98 498 88 HOH HOH . C 3 HOH A 99 499 94 HOH HOH . C 3 HOH A 100 500 50 HOH HOH . C 3 HOH A 101 501 67 HOH HOH . C 3 HOH A 102 502 78 HOH HOH . C 3 HOH A 103 503 23 HOH HOH . C 3 HOH A 104 504 104 HOH HOH . C 3 HOH A 105 505 64 HOH HOH . C 3 HOH A 106 506 31 HOH HOH . C 3 HOH A 107 507 89 HOH HOH . C 3 HOH A 108 508 150 HOH HOH . C 3 HOH A 109 509 38 HOH HOH . C 3 HOH A 110 510 91 HOH HOH . C 3 HOH A 111 511 71 HOH HOH . C 3 HOH A 112 512 29 HOH HOH . C 3 HOH A 113 513 147 HOH HOH . C 3 HOH A 114 514 90 HOH HOH . C 3 HOH A 115 515 109 HOH HOH . C 3 HOH A 116 516 99 HOH HOH . C 3 HOH A 117 517 74 HOH HOH . C 3 HOH A 118 518 41 HOH HOH . C 3 HOH A 119 519 145 HOH HOH . C 3 HOH A 120 520 106 HOH HOH . C 3 HOH A 121 521 111 HOH HOH . C 3 HOH A 122 522 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAN 9D6 . . . B 2 0.832 -20.919 -16.198 1 66.91 ? CAN 9D6 301 A 1 HETATM 2 C CAK 9D6 . . . B 2 -0.572 -21.551 -16.003 1 67.52 ? CAK 9D6 301 A 1 HETATM 3 C CAJ 9D6 . . . B 2 -0.878 -22.661 -17.039 1 68.1 ? CAJ 9D6 301 A 1 HETATM 4 C CAL 9D6 . . . B 2 0.134 -23.83 -16.929 1 68.33 ? CAL 9D6 301 A 1 HETATM 5 C CAO 9D6 . . . B 2 1.42 -23.422 -16.155 1 67.75 ? CAO 9D6 301 A 1 HETATM 6 C CBC 9D6 . . . B 2 1.912 -21.988 -16.538 1 66.32 ? CBC 9D6 301 A 1 HETATM 7 N NBD 9D6 . . . B 2 3.348 -21.707 -16.179 1 63.62 ? NBD 9D6 301 A 1 HETATM 8 C CAM 9D6 . . . B 2 4.29 -22.323 -17.169 1 64.25 ? CAM 9D6 301 A 1 HETATM 9 C CAA 9D6 . . . B 2 3.916 -22.315 -18.675 1 63.91 ? CAA 9D6 301 A 1 HETATM 10 C CAQ 9D6 . . . B 2 3.801 -20.294 -16.077 1 59.49 ? CAQ 9D6 301 A 1 HETATM 11 C CAX 9D6 . . . B 2 3.918 -19.637 -14.842 1 55.67 ? CAX 9D6 301 A 1 HETATM 12 C CAG 9D6 . . . B 2 2.827 -18.904 -14.355 1 55.19 ? CAG 9D6 301 A 1 HETATM 13 C CAE 9D6 . . . B 2 2.933 -18.117 -13.202 1 51.79 ? CAE 9D6 301 A 1 HETATM 14 C CAF 9D6 . . . B 2 5.17 -19.451 -14.239 1 52.62 ? CAF 9D6 301 A 1 HETATM 15 C CAD 9D6 . . . B 2 5.288 -18.654 -13.084 1 50.59 ? CAD 9D6 301 A 1 HETATM 16 C CAW 9D6 . . . B 2 4.163 -17.997 -12.552 1 47.99 ? CAW 9D6 301 A 1 HETATM 17 C CAP 9D6 . . . B 2 4.258 -17.157 -11.435 1 41.64 ? CAP 9D6 301 A 1 HETATM 18 N NAS 9D6 . . . B 2 4.102 -17.863 -10.142 1 36.66 ? NAS 9D6 301 A 1 HETATM 19 C CAV 9D6 . . . B 2 4.94 -17.642 -9.114 1 32.57 ? CAV 9D6 301 A 1 HETATM 20 O OAB 9D6 . . . B 2 5.905 -16.883 -9.257 1 31.66 ? OAB 9D6 301 A 1 HETATM 21 C CAY 9D6 . . . B 2 4.819 -18.336 -7.945 1 29.88 ? CAY 9D6 301 A 1 HETATM 22 C CBB 9D6 . . . B 2 3.934 -19.305 -7.518 1 28.08 ? CBB 9D6 301 A 1 HETATM 23 C CAZ 9D6 . . . B 2 2.812 -19.861 -8.058 1 28.12 ? CAZ 9D6 301 A 1 HETATM 24 O OAC 9D6 . . . B 2 2.37 -19.584 -9.174 1 31.07 ? OAC 9D6 301 A 1 HETATM 25 N NAT 9D6 . . . B 2 2.094 -20.838 -7.372 1 25.33 ? NAT 9D6 301 A 1 HETATM 26 C CAH 9D6 . . . B 2 2.405 -21.222 -6.154 1 25.25 ? CAH 9D6 301 A 1 HETATM 27 N NAR 9D6 . . . B 2 3.541 -20.668 -5.589 1 22.27 ? NAR 9D6 301 A 1 HETATM 28 C CBA 9D6 . . . B 2 4.257 -19.757 -6.262 1 26.46 ? CBA 9D6 301 A 1 HETATM 29 S SAU 9D6 . . . B 2 5.564 -19.048 -5.734 1 30.9 ? SAU 9D6 301 A 1 HETATM 30 C CAI 9D6 . . . B 2 5.769 -18.074 -7.04 1 30.99 ? CAI 9D6 301 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 30 #