data_5ZHN
#
_model_server_result.job_id            hpeKGTLuIINNODGpf6O30A 
_model_server_result.datetime_utc      '2024-10-18 15:23:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zhn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5ZHN 
#
_exptl.entry_id    5ZHN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              426.575 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-({4-[(octylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ZHN 
_cell.length_a            84.67 
_cell.length_b            84.67 
_cell.length_c            148.56 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZHN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H30 N4 O2 S' 
_chem_comp.formula_weight    426.575 
_chem_comp.id                9D0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-({4-[(octylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAH NAS 9D0 doub 1 n n 
CAH NAV 9D0 sing 2 n n 
NAS CBC 9D0 sing 3 n n 
NAV CBB 9D0 sing 4 n n 
CBC CBD 9D0 doub 5 n y 
CBC SAW 9D0 sing 6 n y 
CBB OAC 9D0 doub 7 n n 
CBB CBD 9D0 sing 8 n n 
CBD CBA 9D0 sing 9 n y 
SAW CAI 9D0 sing 10 n y 
CBA CAI 9D0 doub 11 n y 
CBA CAX 9D0 sing 12 n n 
CAX NAU 9D0 sing 13 n n 
CAX OAB 9D0 doub 14 n n 
NAU CAR 9D0 sing 15 n n 
CAF CAD 9D0 doub 16 n y 
CAF CAZ 9D0 sing 17 n y 
CAP NAT 9D0 sing 18 n n 
CAP CAO 9D0 sing 19 n n 
NAT CAQ 9D0 sing 20 n n 
CAD CAY 9D0 sing 21 n y 
CAR CAZ 9D0 sing 22 n n 
CAZ CAG 9D0 doub 23 n y 
CAO CAN 9D0 sing 24 n n 
CAY CAQ 9D0 sing 25 n n 
CAY CAE 9D0 doub 26 n y 
CAN CAM 9D0 sing 27 n n 
CAG CAE 9D0 sing 28 n y 
CAM CAL 9D0 sing 29 n n 
CAL CAK 9D0 sing 30 n n 
CAK CAJ 9D0 sing 31 n n 
CAJ CAA 9D0 sing 32 n n 
CAA H1 9D0 sing 33 n n 
CAA H2 9D0 sing 34 n n 
CAA H3 9D0 sing 35 n n 
CAJ H4 9D0 sing 36 n n 
CAJ H5 9D0 sing 37 n n 
CAK H6 9D0 sing 38 n n 
CAK H7 9D0 sing 39 n n 
CAL H8 9D0 sing 40 n n 
CAL H9 9D0 sing 41 n n 
CAM H10 9D0 sing 42 n n 
CAM H11 9D0 sing 43 n n 
CAN H12 9D0 sing 44 n n 
CAN H13 9D0 sing 45 n n 
CAO H14 9D0 sing 46 n n 
CAO H15 9D0 sing 47 n n 
CAP H16 9D0 sing 48 n n 
CAP H17 9D0 sing 49 n n 
NAT H18 9D0 sing 50 n n 
CAQ H20 9D0 sing 51 n n 
CAQ H21 9D0 sing 52 n n 
CAE H22 9D0 sing 53 n n 
CAG H23 9D0 sing 54 n n 
CAD H24 9D0 sing 55 n n 
CAF H25 9D0 sing 56 n n 
CAR H26 9D0 sing 57 n n 
CAR H27 9D0 sing 58 n n 
NAU H28 9D0 sing 59 n n 
CAH H29 9D0 sing 60 n n 
CAI H31 9D0 sing 61 n n 
NAV H19 9D0 sing 62 n n 
#
_atom_sites.entry_id                     5ZHN 
_atom_sites.fract_transf_matrix[1][1]    0.011811 
_atom_sites.fract_transf_matrix[1][2]    0.006819 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013638 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 9D0 A 1 301 1 9D0 DRG . 
D 2 9D0 B 1 301 2 9D0 DRG . 
E 3 HOH A 1 401 25 HOH HOH . 
E 3 HOH A 2 402 44 HOH HOH . 
E 3 HOH A 3 403 78 HOH HOH . 
E 3 HOH A 4 404 79 HOH HOH . 
E 3 HOH A 5 405 93 HOH HOH . 
E 3 HOH A 6 406 72 HOH HOH . 
E 3 HOH A 7 407 47 HOH HOH . 
E 3 HOH A 8 408 30 HOH HOH . 
E 3 HOH A 9 409 76 HOH HOH . 
E 3 HOH A 10 410 77 HOH HOH . 
E 3 HOH A 11 411 55 HOH HOH . 
E 3 HOH A 12 412 53 HOH HOH . 
E 3 HOH A 13 413 3 HOH HOH . 
E 3 HOH A 14 414 54 HOH HOH . 
E 3 HOH A 15 415 22 HOH HOH . 
E 3 HOH A 16 416 83 HOH HOH . 
E 3 HOH A 17 417 73 HOH HOH . 
E 3 HOH A 18 418 17 HOH HOH . 
E 3 HOH A 19 419 59 HOH HOH . 
E 3 HOH A 20 420 71 HOH HOH . 
E 3 HOH A 21 421 70 HOH HOH . 
E 3 HOH A 22 422 9 HOH HOH . 
E 3 HOH A 23 423 122 HOH HOH . 
F 3 HOH B 1 401 42 HOH HOH . 
F 3 HOH B 2 402 64 HOH HOH . 
F 3 HOH B 3 403 21 HOH HOH . 
F 3 HOH B 4 404 82 HOH HOH . 
F 3 HOH B 5 405 61 HOH HOH . 
F 3 HOH B 6 406 65 HOH HOH . 
F 3 HOH B 7 407 62 HOH HOH . 
F 3 HOH B 8 408 85 HOH HOH . 
F 3 HOH B 9 409 94 HOH HOH . 
F 3 HOH B 10 410 26 HOH HOH . 
F 3 HOH B 11 411 98 HOH HOH . 
F 3 HOH B 12 412 20 HOH HOH . 
F 3 HOH B 13 413 68 HOH HOH . 
F 3 HOH B 14 414 34 HOH HOH . 
F 3 HOH B 15 415 29 HOH HOH . 
F 3 HOH B 16 416 121 HOH HOH . 
F 3 HOH B 17 417 74 HOH HOH . 
F 3 HOH B 18 418 81 HOH HOH . 
F 3 HOH B 19 419 123 HOH HOH . 
F 3 HOH B 20 420 124 HOH HOH . 
F 3 HOH B 21 421 15 HOH HOH . 
F 3 HOH B 22 422 24 HOH HOH . 
F 3 HOH B 23 423 18 HOH HOH . 
F 3 HOH B 24 424 5 HOH HOH . 
F 3 HOH B 25 425 75 HOH HOH . 
F 3 HOH B 26 426 12 HOH HOH . 
F 3 HOH B 27 427 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 9D0 . . . D 2 47.743 106.57 -3.543 1 109.65 ? CAA 9D0 301 B 1 
HETATM 2 C CAJ 9D0 . . . D 2 46.452 107.066 -4.19 1 110.8 ? CAJ 9D0 301 B 1 
HETATM 3 C CAK 9D0 . . . D 2 45.946 105.958 -5.119 1 113.06 ? CAK 9D0 301 B 1 
HETATM 4 C CAL 9D0 . . . D 2 44.64 106.372 -5.808 1 113.01 ? CAL 9D0 301 B 1 
HETATM 5 C CAM 9D0 . . . D 2 44.186 105.262 -6.762 1 115.23 ? CAM 9D0 301 B 1 
HETATM 6 C CAN 9D0 . . . D 2 43.135 104.37 -6.083 1 117.62 ? CAN 9D0 301 B 1 
HETATM 7 C CAO 9D0 . . . D 2 41.897 104.218 -6.978 1 119.64 ? CAO 9D0 301 B 1 
HETATM 8 C CAP 9D0 . . . D 2 40.788 105.203 -6.564 1 121.47 ? CAP 9D0 301 B 1 
HETATM 9 N NAT 9D0 . . . D 2 39.602 105.146 -7.462 1 123.64 ? NAT 9D0 301 B 1 
HETATM 10 C CAQ 9D0 . . . D 2 38.456 104.339 -6.942 1 121.63 ? CAQ 9D0 301 B 1 
HETATM 11 C CAY 9D0 . . . D 2 37.856 104.896 -5.802 1 117.77 ? CAY 9D0 301 B 1 
HETATM 12 C CAE 9D0 . . . D 2 37.272 106.169 -5.854 1 116.33 ? CAE 9D0 301 B 1 
HETATM 13 C CAG 9D0 . . . D 2 36.714 106.726 -4.7 1 115.43 ? CAG 9D0 301 B 1 
HETATM 14 C CAD 9D0 . . . D 2 37.88 104.184 -4.6 1 115.66 ? CAD 9D0 301 B 1 
HETATM 15 C CAF 9D0 . . . D 2 37.315 104.745 -3.452 1 113.75 ? CAF 9D0 301 B 1 
HETATM 16 C CAZ 9D0 . . . D 2 36.747 106.023 -3.486 1 111.81 ? CAZ 9D0 301 B 1 
HETATM 17 C CAR 9D0 . . . D 2 36.208 106.595 -2.317 1 104.65 ? CAR 9D0 301 B 1 
HETATM 18 N NAU 9D0 . . . D 2 37.151 107.567 -1.684 1 95.65 ? NAU 9D0 301 B 1 
HETATM 19 C CAX 9D0 . . . D 2 37.107 108.901 -1.901 1 86.92 ? CAX 9D0 301 B 1 
HETATM 20 O OAB 9D0 . . . D 2 36.275 109.389 -2.672 1 86.67 ? OAB 9D0 301 B 1 
HETATM 21 C CBA 9D0 . . . D 2 38.014 109.729 -1.309 1 80.05 ? CBA 9D0 301 B 1 
HETATM 22 C CBD 9D0 . . . D 2 39.295 109.511 -0.85 1 76.38 ? CBD 9D0 301 B 1 
HETATM 23 C CBB 9D0 . . . D 2 40.021 108.39 -0.648 1 79.65 ? CBB 9D0 301 B 1 
HETATM 24 O OAC 9D0 . . . D 2 39.63 107.261 -0.943 1 81.71 ? OAC 9D0 301 B 1 
HETATM 25 N NAV 9D0 . . . D 2 41.309 108.47 -0.087 1 79.36 ? NAV 9D0 301 B 1 
HETATM 26 C CAH 9D0 . . . D 2 41.892 109.609 0.226 1 75.99 ? CAH 9D0 301 B 1 
HETATM 27 N NAS 9D0 . . . D 2 41.136 110.754 0.05 1 72.04 ? NAS 9D0 301 B 1 
HETATM 28 C CBC 9D0 . . . D 2 39.917 110.681 -0.477 1 72.63 ? CBC 9D0 301 B 1 
HETATM 29 S SAW 9D0 . . . D 2 39.068 111.892 -0.83 1 78.51 ? SAW 9D0 301 B 1 
HETATM 30 C CAI 9D0 . . . D 2 37.742 111.039 -1.378 1 80.2 ? CAI 9D0 301 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#