data_5ZHP # _model_server_result.job_id 8_roaRF0pbSLJdsgcsON1A _model_server_result.datetime_utc '2024-12-21 13:41:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zhp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1201}' # _entry.id 5ZHP # _exptl.entry_id 5ZHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.7 _cell.angle_gamma 90 _cell.entry_id 5ZHP _cell.length_a 122.11 _cell.length_b 53.05 _cell.length_c 124.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 1202 MAL 2 n C GLC 2 C 2 GLC A 1202 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 140 1_555 A SG CYS 165 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 357 A CYS 516 1_555 A SG CYS 360 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 85 B CYS 140 1_555 B SG CYS 165 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 357 B CYS 516 1_555 B SG CYS 360 B CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 sing # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 376 n n O1 HO1 PG4 sing 377 n n C1 C2 PG4 sing 378 n n C1 H11 PG4 sing 379 n n C1 H12 PG4 sing 380 n n C2 O2 PG4 sing 381 n n C2 H21 PG4 sing 382 n n C2 H22 PG4 sing 383 n n O2 C3 PG4 sing 384 n n C3 C4 PG4 sing 385 n n C3 H31 PG4 sing 386 n n C3 H32 PG4 sing 387 n n C4 O3 PG4 sing 388 n n C4 H41 PG4 sing 389 n n C4 H42 PG4 sing 390 n n O3 C5 PG4 sing 391 n n C5 C6 PG4 sing 392 n n C5 H51 PG4 sing 393 n n C5 H52 PG4 sing 394 n n C6 O4 PG4 sing 395 n n C6 H61 PG4 sing 396 n n C6 H62 PG4 sing 397 n n O4 C7 PG4 sing 398 n n C7 C8 PG4 sing 399 n n C7 H71 PG4 sing 400 n n C7 H72 PG4 sing 401 n n C8 O5 PG4 sing 402 n n C8 H81 PG4 sing 403 n n C8 H82 PG4 sing 404 n n O5 HO5 PG4 sing 405 n n # _atom_sites.entry_id 5ZHP _atom_sites.fract_transf_matrix[1][1] 0.008189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PG4 A 1 1201 1201 PG4 PG4 . E 4 9EC A 1 1203 1203 9EC 9EC . F 4 9EC B 1 2001 2001 9EC 9EC . G 5 P6G B 1 2002 2002 P6G P6G . H 6 CIT B 1 2003 2003 CIT CIT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . D 3 -27.935 -49.307 202.529 1 81.33 ? O1 PG4 1201 A 1 HETATM 2 C C1 PG4 . . . D 3 -27.831 -50.125 203.662 1 84.21 ? C1 PG4 1201 A 1 HETATM 3 C C2 PG4 . . . D 3 -26.595 -51.011 203.511 1 88.09 ? C2 PG4 1201 A 1 HETATM 4 O O2 PG4 . . . D 3 -26.266 -51.527 204.771 1 90.7 ? O2 PG4 1201 A 1 HETATM 5 C C3 PG4 . . . D 3 -26.009 -50.544 205.736 1 84.62 ? C3 PG4 1201 A 1 HETATM 6 C C4 PG4 . . . D 3 -24.498 -50.433 205.934 1 86.65 ? C4 PG4 1201 A 1 HETATM 7 O O3 PG4 . . . D 3 -24.143 -49.079 205.901 1 84 ? O3 PG4 1201 A 1 HETATM 8 C C5 PG4 . . . D 3 -22.839 -48.847 205.451 1 82.16 ? C5 PG4 1201 A 1 HETATM 9 C C6 PG4 . . . D 3 -22.56 -47.345 205.487 1 80.59 ? C6 PG4 1201 A 1 HETATM 10 O O4 PG4 . . . D 3 -23.679 -46.661 204.997 1 87.93 ? O4 PG4 1201 A 1 HETATM 11 C C7 PG4 . . . D 3 -24.051 -47.013 203.694 1 92.73 ? C7 PG4 1201 A 1 HETATM 12 C C8 PG4 . . . D 3 -24.911 -45.888 203.117 1 90.79 ? C8 PG4 1201 A 1 HETATM 13 O O5 PG4 . . . D 3 -26.15 -46.426 202.75 1 91.08 ? O5 PG4 1201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #