data_5ZHP # _model_server_result.job_id mHdiZNpD_Srhxbavjjjknw _model_server_result.datetime_utc '2024-12-21 14:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zhp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1203}' # _entry.id 5ZHP # _exptl.entry_id 5ZHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.464 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2R,4S,5S,7s)-7-({[4-fluoro-2-(thiophen-2-yl)phenyl]carbamoyl}oxy)-9,9-dimethyl-3-oxa-9-azatricyclo[3.3.1.0~2,4~]nonan-9-ium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.7 _cell.angle_gamma 90 _cell.entry_id 5ZHP _cell.length_a 122.11 _cell.length_b 53.05 _cell.length_c 124.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 1202 MAL 2 n C GLC 2 C 2 GLC A 1202 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 140 1_555 A SG CYS 165 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 357 A CYS 516 1_555 A SG CYS 360 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 85 B CYS 140 1_555 B SG CYS 165 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 357 B CYS 516 1_555 B SG CYS 360 B CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 sing # _chem_comp.formula 'C20 H22 F N2 O3 S 1' _chem_comp.formula_weight 389.464 _chem_comp.id 9EC _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2R,4S,5S,7s)-7-({[4-fluoro-2-(thiophen-2-yl)phenyl]carbamoyl}oxy)-9,9-dimethyl-3-oxa-9-azatricyclo[3.3.1.0~2,4~]nonan-9-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 N23 9EC sing 1 n n C24 N23 9EC sing 2 n n N23 C19 9EC sing 3 n n N23 C26 9EC sing 4 n n C19 C18 9EC sing 5 n n C19 C20 9EC sing 6 n n C18 C17 9EC sing 7 n n C20 O22 9EC sing 8 n n C20 C21 9EC sing 9 n n C26 C27 9EC sing 10 n n C26 C21 9EC sing 11 n n C17 C27 9EC sing 12 n n C17 O16 9EC sing 13 n n O22 C21 9EC sing 14 n n O01 C02 9EC doub 15 n n O16 C02 9EC sing 16 n n C14 C13 9EC doub 17 n y C14 S15 9EC sing 18 n y C02 N03 9EC sing 19 n n C13 C12 9EC sing 20 n y S15 C11 9EC sing 21 n y N03 C04 9EC sing 22 n n C12 C11 9EC doub 23 n y C11 C10 9EC sing 24 n n C04 C10 9EC doub 25 n y C04 C05 9EC sing 26 n y C10 C09 9EC sing 27 n y C05 C06 9EC doub 28 n y C09 C07 9EC doub 29 n y C06 C07 9EC sing 30 n y C07 F08 9EC sing 31 n n C12 H37 9EC sing 32 n n C13 H38 9EC sing 33 n n C14 H39 9EC sing 34 n n C05 H34 9EC sing 35 n n C06 H35 9EC sing 36 n n C09 H36 9EC sing 37 n n C17 H28 9EC sing 38 n n C18 H40 9EC sing 39 n n C18 H41 9EC sing 40 n n C19 H29 9EC sing 41 n n C20 H30 9EC sing 42 n n C21 H31 9EC sing 43 n n C24 H43 9EC sing 44 n n C24 H42 9EC sing 45 n n C24 H44 9EC sing 46 n n C25 H45 9EC sing 47 n n C25 H46 9EC sing 48 n n C25 H47 9EC sing 49 n n C26 H32 9EC sing 50 n n C27 H49 9EC sing 51 n n C27 H48 9EC sing 52 n n N03 H33 9EC sing 53 n n # _atom_sites.entry_id 5ZHP _atom_sites.fract_transf_matrix[1][1] 0.008189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PG4 A 1 1201 1201 PG4 PG4 . E 4 9EC A 1 1203 1203 9EC 9EC . F 4 9EC B 1 2001 2001 9EC 9EC . G 5 P6G B 1 2002 2002 P6G P6G . H 6 CIT B 1 2003 2003 CIT CIT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 9EC . . . E 4 -23.75 -48.43 194.608 1 70.78 ? C10 9EC 1203 A 1 HETATM 2 C C11 9EC . . . E 4 -22.647 -47.693 193.945 1 76.98 ? C11 9EC 1203 A 1 HETATM 3 C C12 9EC . . . E 4 -22.357 -46.387 194.004 1 81.47 ? C12 9EC 1203 A 1 HETATM 4 C C13 9EC . . . E 4 -21.226 -46.044 193.238 1 80.03 ? C13 9EC 1203 A 1 HETATM 5 C C14 9EC . . . E 4 -20.66 -47.082 192.601 1 76.65 ? C14 9EC 1203 A 1 HETATM 6 C C02 9EC . . . E 4 -21.299 -50.571 195.554 1 74.35 ? C02 9EC 1203 A 1 HETATM 7 C C04 9EC . . . E 4 -23.602 -49.768 194.991 1 71.78 ? C04 9EC 1203 A 1 HETATM 8 C C05 9EC . . . E 4 -24.655 -50.431 195.616 1 75.66 ? C05 9EC 1203 A 1 HETATM 9 C C06 9EC . . . E 4 -25.859 -49.769 195.858 1 80.02 ? C06 9EC 1203 A 1 HETATM 10 C C07 9EC . . . E 4 -26.007 -48.435 195.476 1 76.02 ? C07 9EC 1203 A 1 HETATM 11 C C09 9EC . . . E 4 -24.952 -47.768 194.853 1 70.62 ? C09 9EC 1203 A 1 HETATM 12 C C17 9EC . . . E 4 -20.246 -49.646 197.428 1 73 ? C17 9EC 1203 A 1 HETATM 13 C C18 9EC . . . E 4 -18.831 -49.112 197.076 1 76.66 ? C18 9EC 1203 A 1 HETATM 14 C C19 9EC . . . E 4 -18.649 -47.664 197.408 1 79.44 ? C19 9EC 1203 A 1 HETATM 15 C C20 9EC . . . E 4 -19.695 -46.911 196.567 1 74.38 ? C20 9EC 1203 A 1 HETATM 16 C C21 9EC . . . E 4 -20.837 -46.792 197.458 1 74.26 ? C21 9EC 1203 A 1 HETATM 17 C C24 9EC . . . E 4 -18.406 -46.124 199.252 1 72.75 ? C24 9EC 1203 A 1 HETATM 18 C C25 9EC . . . E 4 -18.294 -48.292 199.749 1 81.93 ? C25 9EC 1203 A 1 HETATM 19 C C26 9EC . . . E 4 -20.374 -47.469 198.757 1 73.37 ? C26 9EC 1203 A 1 HETATM 20 C C27 9EC . . . E 4 -20.839 -48.888 198.649 1 76.36 ? C27 9EC 1203 A 1 HETATM 21 F F08 9EC . . . E 4 -27.184 -47.781 195.713 1 80.71 ? F08 9EC 1203 A 1 HETATM 22 N N03 9EC . . . E 4 -22.393 -50.459 194.756 1 72.47 ? N03 9EC 1203 A 1 HETATM 23 N N23 9EC . . . E 4 -18.96 -47.405 198.762 1 72.99 1 N23 9EC 1203 A 1 HETATM 24 O O01 9EC . . . E 4 -20.543 -51.486 195.554 1 72.13 ? O01 9EC 1203 A 1 HETATM 25 O O16 9EC . . . E 4 -21.159 -49.494 196.354 1 71.61 ? O16 9EC 1203 A 1 HETATM 26 O O22 9EC . . . E 4 -20.163 -45.644 196.984 1 72.49 ? O22 9EC 1203 A 1 HETATM 27 S S15 9EC . . . E 4 -21.519 -48.511 192.939 1 84.07 ? S15 9EC 1203 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 588 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #