data_5ZHP # _model_server_result.job_id 5VxiC3xGLhv4lRwDMygZQA _model_server_result.datetime_utc '2024-12-21 14:15:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zhp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2001}' # _entry.id 5ZHP # _exptl.entry_id 5ZHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.464 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2R,4S,5S,7s)-7-({[4-fluoro-2-(thiophen-2-yl)phenyl]carbamoyl}oxy)-9,9-dimethyl-3-oxa-9-azatricyclo[3.3.1.0~2,4~]nonan-9-ium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.7 _cell.angle_gamma 90 _cell.entry_id 5ZHP _cell.length_a 122.11 _cell.length_b 53.05 _cell.length_c 124.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 1202 MAL 2 n C GLC 2 C 2 GLC A 1202 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 140 1_555 A SG CYS 165 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 357 A CYS 516 1_555 A SG CYS 360 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 85 B CYS 140 1_555 B SG CYS 165 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 357 B CYS 516 1_555 B SG CYS 360 B CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 sing # _chem_comp.formula 'C20 H22 F N2 O3 S 1' _chem_comp.formula_weight 389.464 _chem_comp.id 9EC _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2R,4S,5S,7s)-7-({[4-fluoro-2-(thiophen-2-yl)phenyl]carbamoyl}oxy)-9,9-dimethyl-3-oxa-9-azatricyclo[3.3.1.0~2,4~]nonan-9-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 N23 9EC sing 1 n n C24 N23 9EC sing 2 n n N23 C19 9EC sing 3 n n N23 C26 9EC sing 4 n n C19 C18 9EC sing 5 n n C19 C20 9EC sing 6 n n C18 C17 9EC sing 7 n n C20 O22 9EC sing 8 n n C20 C21 9EC sing 9 n n C26 C27 9EC sing 10 n n C26 C21 9EC sing 11 n n C17 C27 9EC sing 12 n n C17 O16 9EC sing 13 n n O22 C21 9EC sing 14 n n O01 C02 9EC doub 15 n n O16 C02 9EC sing 16 n n C14 C13 9EC doub 17 n y C14 S15 9EC sing 18 n y C02 N03 9EC sing 19 n n C13 C12 9EC sing 20 n y S15 C11 9EC sing 21 n y N03 C04 9EC sing 22 n n C12 C11 9EC doub 23 n y C11 C10 9EC sing 24 n n C04 C10 9EC doub 25 n y C04 C05 9EC sing 26 n y C10 C09 9EC sing 27 n y C05 C06 9EC doub 28 n y C09 C07 9EC doub 29 n y C06 C07 9EC sing 30 n y C07 F08 9EC sing 31 n n C12 H37 9EC sing 32 n n C13 H38 9EC sing 33 n n C14 H39 9EC sing 34 n n C05 H34 9EC sing 35 n n C06 H35 9EC sing 36 n n C09 H36 9EC sing 37 n n C17 H28 9EC sing 38 n n C18 H40 9EC sing 39 n n C18 H41 9EC sing 40 n n C19 H29 9EC sing 41 n n C20 H30 9EC sing 42 n n C21 H31 9EC sing 43 n n C24 H43 9EC sing 44 n n C24 H42 9EC sing 45 n n C24 H44 9EC sing 46 n n C25 H45 9EC sing 47 n n C25 H46 9EC sing 48 n n C25 H47 9EC sing 49 n n C26 H32 9EC sing 50 n n C27 H49 9EC sing 51 n n C27 H48 9EC sing 52 n n N03 H33 9EC sing 53 n n # _atom_sites.entry_id 5ZHP _atom_sites.fract_transf_matrix[1][1] 0.008189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PG4 A 1 1201 1201 PG4 PG4 . E 4 9EC A 1 1203 1203 9EC 9EC . F 4 9EC B 1 2001 2001 9EC 9EC . G 5 P6G B 1 2002 2002 P6G P6G . H 6 CIT B 1 2003 2003 CIT CIT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 9EC . . . F 4 14.393 -43.523 240.518 1 68.82 ? C10 9EC 2001 B 1 HETATM 2 C C11 9EC . . . F 4 15.164 -44.332 239.543 1 64.42 ? C11 9EC 2001 B 1 HETATM 3 C C12 9EC . . . F 4 15.025 -45.629 239.237 1 63.06 ? C12 9EC 2001 B 1 HETATM 4 C C13 9EC . . . F 4 15.942 -46.062 238.259 1 61.59 ? C13 9EC 2001 B 1 HETATM 5 C C14 9EC . . . F 4 16.772 -45.101 237.823 1 69.76 ? C14 9EC 2001 B 1 HETATM 6 C C02 9EC . . . F 4 13.977 -41.372 237.916 1 71.9 ? C02 9EC 2001 B 1 HETATM 7 C C04 9EC . . . F 4 14.126 -42.166 240.292 1 67.09 ? C04 9EC 2001 B 1 HETATM 8 C C05 9EC . . . F 4 13.393 -41.438 241.23 1 69.07 ? C05 9EC 2001 B 1 HETATM 9 C C06 9EC . . . F 4 12.929 -42.055 242.393 1 65.24 ? C06 9EC 2001 B 1 HETATM 10 C C07 9EC . . . F 4 13.195 -43.407 242.616 1 66.17 ? C07 9EC 2001 B 1 HETATM 11 C C09 9EC . . . F 4 13.925 -44.137 241.68 1 70.75 ? C09 9EC 2001 B 1 HETATM 12 C C17 9EC . . . F 4 12.26 -42.22 236.539 1 66.79 ? C17 9EC 2001 B 1 HETATM 13 C C18 9EC . . . F 4 12.93 -42.83 235.275 1 72.4 ? C18 9EC 2001 B 1 HETATM 14 C C19 9EC . . . F 4 12.639 -44.287 235.095 1 69.64 ? C19 9EC 2001 B 1 HETATM 15 C C20 9EC . . . F 4 13.197 -44.974 236.352 1 64.59 ? C20 9EC 2001 B 1 HETATM 16 C C21 9EC . . . F 4 12.057 -45.037 237.25 1 66.92 ? C21 9EC 2001 B 1 HETATM 17 C C24 9EC . . . F 4 10.885 -45.855 234.52 1 65.76 ? C24 9EC 2001 B 1 HETATM 18 C C25 9EC . . . F 4 10.459 -43.69 234.152 1 70.25 ? C25 9EC 2001 B 1 HETATM 19 C C26 9EC . . . F 4 10.914 -44.386 236.454 1 73.45 ? C26 9EC 2001 B 1 HETATM 20 C C27 9EC . . . F 4 10.922 -42.943 236.853 1 71.64 ? C27 9EC 2001 B 1 HETATM 21 F F08 9EC . . . F 4 12.741 -44.017 243.752 1 67.78 ? F08 9EC 2001 B 1 HETATM 22 N N03 9EC . . . F 4 14.588 -41.521 239.121 1 69.07 ? N03 9EC 2001 B 1 HETATM 23 N N23 9EC . . . F 4 11.246 -44.535 235.086 1 69.55 1 N23 9EC 2001 B 1 HETATM 24 O O01 9EC . . . F 4 14.211 -40.508 237.135 1 65.2 ? O01 9EC 2001 B 1 HETATM 25 O O16 9EC . . . F 4 13.063 -42.343 237.702 1 67.46 ? O16 9EC 2001 B 1 HETATM 26 O O22 9EC . . . F 4 12.672 -46.216 236.773 1 64.94 ? O22 9EC 2001 B 1 HETATM 27 S S15 9EC . . . F 4 16.432 -43.634 238.618 1 80.5 ? S15 9EC 2001 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #