data_5ZHP # _model_server_result.job_id vUI6houV8kgkoiF4682XGA _model_server_result.datetime_utc '2024-12-21 13:43:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zhp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2002}' # _entry.id 5ZHP # _exptl.entry_id 5ZHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.7 _cell.angle_gamma 90 _cell.entry_id 5ZHP _cell.length_a 122.11 _cell.length_b 53.05 _cell.length_c 124.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 1202 MAL 2 n C GLC 2 C 2 GLC A 1202 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 140 1_555 A SG CYS 165 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 357 A CYS 516 1_555 A SG CYS 360 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 85 B CYS 140 1_555 B SG CYS 165 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 357 B CYS 516 1_555 B SG CYS 360 B CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 sing # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 332 n n O1 H1 P6G sing 333 n n C2 C3 P6G sing 334 n n C2 H21 P6G sing 335 n n C2 H22 P6G sing 336 n n C3 O4 P6G sing 337 n n C3 H31 P6G sing 338 n n C3 H32 P6G sing 339 n n O4 C5 P6G sing 340 n n C5 C6 P6G sing 341 n n C5 H51 P6G sing 342 n n C5 H52 P6G sing 343 n n C6 O7 P6G sing 344 n n C6 H61 P6G sing 345 n n C6 H62 P6G sing 346 n n O7 C8 P6G sing 347 n n C8 C9 P6G sing 348 n n C8 H81 P6G sing 349 n n C8 H82 P6G sing 350 n n C9 O10 P6G sing 351 n n C9 H91 P6G sing 352 n n C9 H92 P6G sing 353 n n O10 C11 P6G sing 354 n n C11 C12 P6G sing 355 n n C11 H111 P6G sing 356 n n C11 H112 P6G sing 357 n n C12 O13 P6G sing 358 n n C12 H121 P6G sing 359 n n C12 H122 P6G sing 360 n n O13 C14 P6G sing 361 n n C14 C15 P6G sing 362 n n C14 H141 P6G sing 363 n n C14 H142 P6G sing 364 n n C15 O16 P6G sing 365 n n C15 H151 P6G sing 366 n n C15 H152 P6G sing 367 n n O16 C17 P6G sing 368 n n C17 C18 P6G sing 369 n n C17 H171 P6G sing 370 n n C17 H172 P6G sing 371 n n C18 O19 P6G sing 372 n n C18 H181 P6G sing 373 n n C18 H182 P6G sing 374 n n O19 H19 P6G sing 375 n n # _atom_sites.entry_id 5ZHP _atom_sites.fract_transf_matrix[1][1] 0.008189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PG4 A 1 1201 1201 PG4 PG4 . E 4 9EC A 1 1203 1203 9EC 9EC . F 4 9EC B 1 2001 2001 9EC 9EC . G 5 P6G B 1 2002 2002 P6G P6G . H 6 CIT B 1 2003 2003 CIT CIT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . G 5 4.494 -44.125 244.981 1 87.34 ? O1 P6G 2002 B 1 HETATM 2 C C2 P6G . . . G 5 5.65 -44.624 244.365 1 79.51 ? C2 P6G 2002 B 1 HETATM 3 C C3 P6G . . . G 5 5.386 -44.739 242.865 1 81.82 ? C3 P6G 2002 B 1 HETATM 4 O O4 P6G . . . G 5 6.152 -45.798 242.364 1 82.75 ? O4 P6G 2002 B 1 HETATM 5 C C5 P6G . . . G 5 6.526 -45.644 241.025 1 73.15 ? C5 P6G 2002 B 1 HETATM 6 C C6 P6G . . . G 5 5.259 -45.459 240.192 1 75.37 ? C6 P6G 2002 B 1 HETATM 7 O O7 P6G . . . G 5 5.197 -46.493 239.253 1 77.36 ? O7 P6G 2002 B 1 HETATM 8 C C8 P6G . . . G 5 4.413 -46.192 238.134 1 73.95 ? C8 P6G 2002 B 1 HETATM 9 C C9 P6G . . . G 5 4.538 -44.698 237.855 1 66.4 ? C9 P6G 2002 B 1 HETATM 10 O O10 P6G . . . G 5 3.434 -44.068 238.433 1 74 ? O10 P6G 2002 B 1 HETATM 11 C C11 P6G . . . G 5 3.038 -42.895 237.784 1 78.26 ? C11 P6G 2002 B 1 HETATM 12 C C12 P6G . . . G 5 3.85 -41.737 238.358 1 77.91 ? C12 P6G 2002 B 1 HETATM 13 O O13 P6G . . . G 5 3.181 -41.244 239.483 1 72.84 ? O13 P6G 2002 B 1 HETATM 14 C C14 P6G . . . G 5 3.313 -42.052 240.617 1 76.82 ? C14 P6G 2002 B 1 HETATM 15 C C15 P6G . . . G 5 2.992 -41.198 241.84 1 89.87 ? C15 P6G 2002 B 1 HETATM 16 O O16 P6G . . . G 5 3.846 -40.09 241.834 1 84.07 ? O16 P6G 2002 B 1 HETATM 17 C C17 P6G . . . G 5 5.191 -40.427 242.021 1 78.66 ? C17 P6G 2002 B 1 HETATM 18 C C18 P6G . . . G 5 5.291 -41.304 243.267 1 74.92 ? C18 P6G 2002 B 1 HETATM 19 O O19 P6G . . . G 5 6.459 -42.07 243.172 1 76.63 ? O19 P6G 2002 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #