data_5ZHX # _model_server_result.job_id LnhwQ25E3KDUVzHMI6XsNA _model_server_result.datetime_utc '2024-11-22 00:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zhx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 5ZHX # _exptl.entry_id 5ZHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.367 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description FARNESYL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZHX _cell.length_a 93.32 _cell.length_b 181.77 _cell.length_c 205.31 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E SG CYS 195 e CYS 190 1_555 I C1 FAR . e FAR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale2 F SG CYS 195 f CYS 190 1_555 J C1 FAR . f FAR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? covale ? covale3 G SG CYS 195 g CYS 190 1_555 K C1 FAR . g FAR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale4 H SG CYS 195 h CYS 190 1_555 L C1 FAR . h FAR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? # _chem_comp.formula 'C15 H26' _chem_comp.formula_weight 206.367 _chem_comp.id FAR _chem_comp.mon_nstd_flag . _chem_comp.name FARNESYL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FAR sing 83 n n C1 H11 FAR sing 84 n n C1 H12A FAR sing 85 n n C1 H13 FAR sing 86 n n C2 C3 FAR doub 87 e n C2 H2 FAR sing 88 n n C3 C5 FAR sing 89 n n C3 C4 FAR sing 90 n n C5 C6 FAR sing 91 n n C5 H51 FAR sing 92 n n C5 H52 FAR sing 93 n n C6 C7 FAR sing 94 n n C6 H61 FAR sing 95 n n C6 H62 FAR sing 96 n n C7 C8 FAR doub 97 e n C7 H7 FAR sing 98 n n C8 C9 FAR sing 99 n n C8 C10 FAR sing 100 n n C9 C11 FAR sing 101 n n C9 H91 FAR sing 102 n n C9 H92 FAR sing 103 n n C11 C12 FAR sing 104 n n C11 H111 FAR sing 105 n n C11 H112 FAR sing 106 n n C12 C13 FAR doub 107 n n C12 H12 FAR sing 108 n n C13 C14 FAR sing 109 n n C13 C15 FAR sing 110 n n C14 H141 FAR sing 111 n n C14 H142 FAR sing 112 n n C14 H143 FAR sing 113 n n C15 H151 FAR sing 114 n n C15 H152 FAR sing 115 n n C15 H153 FAR sing 116 n n C4 H41 FAR sing 117 n n C4 H42 FAR sing 118 n n C4 H43 FAR sing 119 n n C10 H101 FAR sing 120 n n C10 H102 FAR sing 121 n n C10 H103 FAR sing 122 n n # _atom_sites.entry_id 5ZHX _atom_sites.fract_transf_matrix[1][1] 0.010716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FAR e 1 201 190 FAR FCS . J 3 FAR f 1 201 190 FAR FCS . K 3 FAR g 1 201 190 FAR FCS . L 3 FAR h 1 201 190 FAR FCS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FAR . . . J 3 -17.302 6.688 18.969 1 102.32 ? C1 FAR 201 f 1 HETATM 2 C C2 FAR . . . J 3 -18.475 7.043 18.068 1 100.15 ? C2 FAR 201 f 1 HETATM 3 C C3 FAR . . . J 3 -18.449 8.106 17.228 1 94.46 ? C3 FAR 201 f 1 HETATM 4 C C5 FAR . . . J 3 -19.616 8.446 16.331 1 85.34 ? C5 FAR 201 f 1 HETATM 5 C C6 FAR . . . J 3 -20.08 7.253 15.494 1 85.47 ? C6 FAR 201 f 1 HETATM 6 C C7 FAR . . . J 3 -21.544 6.984 15.791 1 83.36 ? C7 FAR 201 f 1 HETATM 7 C C8 FAR . . . J 3 -22.539 7.786 15.356 1 82.27 ? C8 FAR 201 f 1 HETATM 8 C C9 FAR . . . J 3 -23.966 7.449 15.732 1 79.12 ? C9 FAR 201 f 1 HETATM 9 C C11 FAR . . . J 3 -24.807 7.196 14.496 1 80.86 ? C11 FAR 201 f 1 HETATM 10 C C12 FAR . . . J 3 -26.284 6.917 14.686 1 85.97 ? C12 FAR 201 f 1 HETATM 11 C C13 FAR . . . J 3 -27.067 6.814 15.797 1 92.93 ? C13 FAR 201 f 1 HETATM 12 C C14 FAR . . . J 3 -28.544 6.547 15.616 1 95.43 ? C14 FAR 201 f 1 HETATM 13 C C15 FAR . . . J 3 -26.677 6.919 17.053 1 93.94 ? C15 FAR 201 f 1 HETATM 14 C C4 FAR . . . J 3 -17.268 9.028 17.134 1 100.99 ? C4 FAR 201 f 1 HETATM 15 C C10 FAR . . . J 3 -22.308 8.879 14.633 1 85.39 ? C10 FAR 201 f 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 453 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #