data_5ZI2
#
_model_server_result.job_id            '_l9ngva-ovAjEHbbAbI9GA' 
_model_server_result.datetime_utc      '2024-11-06 00:26:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zi2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5ZI2 
#
_exptl.entry_id    5ZI2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.88 
_cell.angle_gamma         90 
_cell.entry_id            5ZI2 
_cell.length_a            45.099 
_cell.length_b            92.559 
_cell.length_c            82.114 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZI2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 173 n n 
C1 C2 GOL sing 174 n n 
C1 H11 GOL sing 175 n n 
C1 H12 GOL sing 176 n n 
O1 HO1 GOL sing 177 n n 
C2 O2 GOL sing 178 n n 
C2 C3 GOL sing 179 n n 
C2 H2 GOL sing 180 n n 
O2 HO2 GOL sing 181 n n 
C3 O3 GOL sing 182 n n 
C3 H31 GOL sing 183 n n 
C3 H32 GOL sing 184 n n 
O3 HO3 GOL sing 185 n n 
#
_atom_sites.entry_id                     5ZI2 
_atom_sites.fract_transf_matrix[1][1]    0.022173 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003864 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 1 GOL GOL . 
D 3 NAD A 1 402 1 NAD NAD . 
E 4 CL A 1 403 2 CL CL . 
F 4 CL B 1 401 1 CL CL . 
G 5 ADP B 1 402 1 ADP ADP . 
H 6 HOH A 1 501 83 HOH HOH . 
H 6 HOH A 2 502 98 HOH HOH . 
H 6 HOH A 3 503 149 HOH HOH . 
H 6 HOH A 4 504 101 HOH HOH . 
H 6 HOH A 5 505 203 HOH HOH . 
H 6 HOH A 6 506 30 HOH HOH . 
H 6 HOH A 7 507 29 HOH HOH . 
H 6 HOH A 8 508 160 HOH HOH . 
H 6 HOH A 9 509 95 HOH HOH . 
H 6 HOH A 10 510 85 HOH HOH . 
H 6 HOH A 11 511 6 HOH HOH . 
H 6 HOH A 12 512 84 HOH HOH . 
H 6 HOH A 13 513 39 HOH HOH . 
H 6 HOH A 14 514 35 HOH HOH . 
H 6 HOH A 15 515 92 HOH HOH . 
H 6 HOH A 16 516 193 HOH HOH . 
H 6 HOH A 17 517 76 HOH HOH . 
H 6 HOH A 18 518 161 HOH HOH . 
H 6 HOH A 19 519 122 HOH HOH . 
H 6 HOH A 20 520 19 HOH HOH . 
H 6 HOH A 21 521 69 HOH HOH . 
H 6 HOH A 22 522 194 HOH HOH . 
H 6 HOH A 23 523 156 HOH HOH . 
H 6 HOH A 24 524 42 HOH HOH . 
H 6 HOH A 25 525 90 HOH HOH . 
H 6 HOH A 26 526 70 HOH HOH . 
H 6 HOH A 27 527 123 HOH HOH . 
H 6 HOH A 28 528 132 HOH HOH . 
H 6 HOH A 29 529 138 HOH HOH . 
H 6 HOH A 30 530 37 HOH HOH . 
H 6 HOH A 31 531 22 HOH HOH . 
H 6 HOH A 32 532 137 HOH HOH . 
H 6 HOH A 33 533 58 HOH HOH . 
H 6 HOH A 34 534 196 HOH HOH . 
H 6 HOH A 35 535 188 HOH HOH . 
H 6 HOH A 36 536 89 HOH HOH . 
H 6 HOH A 37 537 94 HOH HOH . 
H 6 HOH A 38 538 26 HOH HOH . 
H 6 HOH A 39 539 62 HOH HOH . 
H 6 HOH A 40 540 155 HOH HOH . 
H 6 HOH A 41 541 48 HOH HOH . 
H 6 HOH A 42 542 141 HOH HOH . 
H 6 HOH A 43 543 1 HOH HOH . 
H 6 HOH A 44 544 46 HOH HOH . 
H 6 HOH A 45 545 133 HOH HOH . 
H 6 HOH A 46 546 67 HOH HOH . 
H 6 HOH A 47 547 192 HOH HOH . 
H 6 HOH A 48 548 159 HOH HOH . 
H 6 HOH A 49 549 190 HOH HOH . 
H 6 HOH A 50 550 154 HOH HOH . 
H 6 HOH A 51 551 162 HOH HOH . 
H 6 HOH A 52 552 130 HOH HOH . 
H 6 HOH A 53 553 97 HOH HOH . 
H 6 HOH A 54 554 129 HOH HOH . 
H 6 HOH A 55 555 145 HOH HOH . 
H 6 HOH A 56 556 71 HOH HOH . 
H 6 HOH A 57 557 78 HOH HOH . 
H 6 HOH A 58 558 53 HOH HOH . 
H 6 HOH A 59 559 148 HOH HOH . 
H 6 HOH A 60 560 93 HOH HOH . 
H 6 HOH A 61 561 87 HOH HOH . 
H 6 HOH A 62 562 189 HOH HOH . 
H 6 HOH A 63 563 80 HOH HOH . 
H 6 HOH A 64 564 24 HOH HOH . 
H 6 HOH A 65 565 125 HOH HOH . 
H 6 HOH A 66 566 134 HOH HOH . 
H 6 HOH A 67 567 63 HOH HOH . 
H 6 HOH A 68 568 10 HOH HOH . 
H 6 HOH A 69 569 143 HOH HOH . 
H 6 HOH A 70 570 5 HOH HOH . 
H 6 HOH A 71 571 121 HOH HOH . 
H 6 HOH A 72 572 124 HOH HOH . 
H 6 HOH A 73 573 99 HOH HOH . 
H 6 HOH A 74 574 191 HOH HOH . 
H 6 HOH A 75 575 25 HOH HOH . 
H 6 HOH A 76 576 126 HOH HOH . 
H 6 HOH A 77 577 140 HOH HOH . 
H 6 HOH A 78 578 74 HOH HOH . 
H 6 HOH A 79 579 100 HOH HOH . 
H 6 HOH A 80 580 197 HOH HOH . 
H 6 HOH A 81 581 31 HOH HOH . 
H 6 HOH A 82 582 45 HOH HOH . 
H 6 HOH A 83 583 88 HOH HOH . 
H 6 HOH A 84 584 202 HOH HOH . 
H 6 HOH A 85 585 7 HOH HOH . 
H 6 HOH A 86 586 77 HOH HOH . 
H 6 HOH A 87 587 144 HOH HOH . 
H 6 HOH A 88 588 146 HOH HOH . 
H 6 HOH A 89 589 96 HOH HOH . 
H 6 HOH A 90 590 79 HOH HOH . 
H 6 HOH A 91 591 81 HOH HOH . 
H 6 HOH A 92 592 158 HOH HOH . 
H 6 HOH A 93 593 82 HOH HOH . 
H 6 HOH A 94 594 75 HOH HOH . 
H 6 HOH A 95 595 175 HOH HOH . 
H 6 HOH A 96 596 50 HOH HOH . 
H 6 HOH A 97 597 142 HOH HOH . 
H 6 HOH A 98 598 40 HOH HOH . 
H 6 HOH A 99 599 147 HOH HOH . 
H 6 HOH A 100 600 91 HOH HOH . 
H 6 HOH A 101 601 157 HOH HOH . 
H 6 HOH A 102 602 153 HOH HOH . 
H 6 HOH A 103 603 102 HOH HOH . 
H 6 HOH A 104 604 73 HOH HOH . 
H 6 HOH A 105 605 86 HOH HOH . 
H 6 HOH A 106 606 187 HOH HOH . 
I 6 HOH B 1 501 104 HOH HOH . 
I 6 HOH B 2 502 181 HOH HOH . 
I 6 HOH B 3 503 170 HOH HOH . 
I 6 HOH B 4 504 115 HOH HOH . 
I 6 HOH B 5 505 173 HOH HOH . 
I 6 HOH B 6 506 103 HOH HOH . 
I 6 HOH B 7 507 36 HOH HOH . 
I 6 HOH B 8 508 113 HOH HOH . 
I 6 HOH B 9 509 44 HOH HOH . 
I 6 HOH B 10 510 109 HOH HOH . 
I 6 HOH B 11 511 4 HOH HOH . 
I 6 HOH B 12 512 18 HOH HOH . 
I 6 HOH B 13 513 152 HOH HOH . 
I 6 HOH B 14 514 55 HOH HOH . 
I 6 HOH B 15 515 120 HOH HOH . 
I 6 HOH B 16 516 171 HOH HOH . 
I 6 HOH B 17 517 27 HOH HOH . 
I 6 HOH B 18 518 163 HOH HOH . 
I 6 HOH B 19 519 108 HOH HOH . 
I 6 HOH B 20 520 34 HOH HOH . 
I 6 HOH B 21 521 14 HOH HOH . 
I 6 HOH B 22 522 178 HOH HOH . 
I 6 HOH B 23 523 51 HOH HOH . 
I 6 HOH B 24 524 165 HOH HOH . 
I 6 HOH B 25 525 174 HOH HOH . 
I 6 HOH B 26 526 117 HOH HOH . 
I 6 HOH B 27 527 112 HOH HOH . 
I 6 HOH B 28 528 139 HOH HOH . 
I 6 HOH B 29 529 9 HOH HOH . 
I 6 HOH B 30 530 184 HOH HOH . 
I 6 HOH B 31 531 111 HOH HOH . 
I 6 HOH B 32 532 8 HOH HOH . 
I 6 HOH B 33 533 16 HOH HOH . 
I 6 HOH B 34 534 185 HOH HOH . 
I 6 HOH B 35 535 128 HOH HOH . 
I 6 HOH B 36 536 116 HOH HOH . 
I 6 HOH B 37 537 43 HOH HOH . 
I 6 HOH B 38 538 57 HOH HOH . 
I 6 HOH B 39 539 201 HOH HOH . 
I 6 HOH B 40 540 41 HOH HOH . 
I 6 HOH B 41 541 56 HOH HOH . 
I 6 HOH B 42 542 33 HOH HOH . 
I 6 HOH B 43 543 119 HOH HOH . 
I 6 HOH B 44 544 186 HOH HOH . 
I 6 HOH B 45 545 38 HOH HOH . 
I 6 HOH B 46 546 131 HOH HOH . 
I 6 HOH B 47 547 21 HOH HOH . 
I 6 HOH B 48 548 66 HOH HOH . 
I 6 HOH B 49 549 11 HOH HOH . 
I 6 HOH B 50 550 28 HOH HOH . 
I 6 HOH B 51 551 182 HOH HOH . 
I 6 HOH B 52 552 12 HOH HOH . 
I 6 HOH B 53 553 172 HOH HOH . 
I 6 HOH B 54 554 135 HOH HOH . 
I 6 HOH B 55 555 151 HOH HOH . 
I 6 HOH B 56 556 61 HOH HOH . 
I 6 HOH B 57 557 136 HOH HOH . 
I 6 HOH B 58 558 105 HOH HOH . 
I 6 HOH B 59 559 169 HOH HOH . 
I 6 HOH B 60 560 65 HOH HOH . 
I 6 HOH B 61 561 20 HOH HOH . 
I 6 HOH B 62 562 64 HOH HOH . 
I 6 HOH B 63 563 164 HOH HOH . 
I 6 HOH B 64 564 127 HOH HOH . 
I 6 HOH B 65 565 59 HOH HOH . 
I 6 HOH B 66 566 49 HOH HOH . 
I 6 HOH B 67 567 166 HOH HOH . 
I 6 HOH B 68 568 176 HOH HOH . 
I 6 HOH B 69 569 110 HOH HOH . 
I 6 HOH B 70 570 177 HOH HOH . 
I 6 HOH B 71 571 54 HOH HOH . 
I 6 HOH B 72 572 52 HOH HOH . 
I 6 HOH B 73 573 13 HOH HOH . 
I 6 HOH B 74 574 106 HOH HOH . 
I 6 HOH B 75 575 68 HOH HOH . 
I 6 HOH B 76 576 183 HOH HOH . 
I 6 HOH B 77 577 168 HOH HOH . 
I 6 HOH B 78 578 23 HOH HOH . 
I 6 HOH B 79 579 15 HOH HOH . 
I 6 HOH B 80 580 107 HOH HOH . 
I 6 HOH B 81 581 114 HOH HOH . 
I 6 HOH B 82 582 60 HOH HOH . 
I 6 HOH B 83 583 17 HOH HOH . 
I 6 HOH B 84 584 2 HOH HOH . 
I 6 HOH B 85 585 200 HOH HOH . 
I 6 HOH B 86 586 150 HOH HOH . 
I 6 HOH B 87 587 198 HOH HOH . 
I 6 HOH B 88 588 3 HOH HOH . 
I 6 HOH B 89 589 167 HOH HOH . 
I 6 HOH B 90 590 47 HOH HOH . 
I 6 HOH B 91 591 118 HOH HOH . 
I 6 HOH B 92 592 72 HOH HOH . 
I 6 HOH B 93 593 195 HOH HOH . 
I 6 HOH B 94 594 199 HOH HOH . 
I 6 HOH B 95 595 180 HOH HOH . 
I 6 HOH B 96 596 32 HOH HOH . 
I 6 HOH B 97 597 179 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -23.593 -23.286 5.596 1 52.96 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . C 2 -22.499 -22.401 5.329 1 38.9 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . C 2 -23.12 -24.655 5.15 1 56.66 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . C 2 -23.085 -24.531 3.733 1 58.74 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . C 2 -21.717 -24.999 5.687 1 58.22 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . C 2 -21.566 -26.399 5.902 1 60.23 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#