data_5ZI4 # _model_server_result.job_id myRpL879DVFUuywbDtFlIA _model_server_result.datetime_utc '2024-11-06 01:55:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5ZI4 # _exptl.entry_id 5ZI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZI4 _cell.length_a 57.218 _cell.length_b 86.658 _cell.length_c 135.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 5ZI4 _atom_sites.fract_transf_matrix[1][1] 0.017477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OAA A 1 401 1 OAA OAA . D 3 NAD A 1 402 1 NAD NAD . E 2 OAA B 1 401 2 OAA OAA . F 3 NAD B 1 402 2 NAD NAD . G 4 HOH A 1 501 126 HOH HOH . G 4 HOH A 2 502 125 HOH HOH . G 4 HOH A 3 503 28 HOH HOH . G 4 HOH A 4 504 68 HOH HOH . G 4 HOH A 5 505 82 HOH HOH . G 4 HOH A 6 506 141 HOH HOH . G 4 HOH A 7 507 91 HOH HOH . G 4 HOH A 8 508 71 HOH HOH . G 4 HOH A 9 509 67 HOH HOH . G 4 HOH A 10 510 150 HOH HOH . G 4 HOH A 11 511 16 HOH HOH . G 4 HOH A 12 512 88 HOH HOH . G 4 HOH A 13 513 127 HOH HOH . G 4 HOH A 14 514 80 HOH HOH . G 4 HOH A 15 515 21 HOH HOH . G 4 HOH A 16 516 69 HOH HOH . G 4 HOH A 17 517 66 HOH HOH . G 4 HOH A 18 518 79 HOH HOH . G 4 HOH A 19 519 29 HOH HOH . G 4 HOH A 20 520 96 HOH HOH . G 4 HOH A 21 521 53 HOH HOH . G 4 HOH A 22 522 132 HOH HOH . G 4 HOH A 23 523 129 HOH HOH . G 4 HOH A 24 524 70 HOH HOH . G 4 HOH A 25 525 73 HOH HOH . G 4 HOH A 26 526 76 HOH HOH . G 4 HOH A 27 527 87 HOH HOH . G 4 HOH A 28 528 155 HOH HOH . G 4 HOH A 29 529 128 HOH HOH . G 4 HOH A 30 530 138 HOH HOH . G 4 HOH A 31 531 55 HOH HOH . G 4 HOH A 32 532 22 HOH HOH . G 4 HOH A 33 533 153 HOH HOH . G 4 HOH A 34 534 139 HOH HOH . G 4 HOH A 35 535 33 HOH HOH . G 4 HOH A 36 536 54 HOH HOH . G 4 HOH A 37 537 140 HOH HOH . G 4 HOH A 38 538 85 HOH HOH . G 4 HOH A 39 539 154 HOH HOH . G 4 HOH A 40 540 123 HOH HOH . G 4 HOH A 41 541 19 HOH HOH . G 4 HOH A 42 542 89 HOH HOH . G 4 HOH A 43 543 72 HOH HOH . G 4 HOH A 44 544 75 HOH HOH . G 4 HOH A 45 545 18 HOH HOH . G 4 HOH A 46 546 74 HOH HOH . G 4 HOH A 47 547 83 HOH HOH . G 4 HOH A 48 548 92 HOH HOH . G 4 HOH A 49 549 86 HOH HOH . G 4 HOH A 50 550 20 HOH HOH . G 4 HOH A 51 551 146 HOH HOH . G 4 HOH A 52 552 14 HOH HOH . G 4 HOH A 53 553 77 HOH HOH . G 4 HOH A 54 554 1 HOH HOH . G 4 HOH A 55 555 90 HOH HOH . G 4 HOH A 56 556 134 HOH HOH . G 4 HOH A 57 557 65 HOH HOH . G 4 HOH A 58 558 30 HOH HOH . G 4 HOH A 59 559 93 HOH HOH . G 4 HOH A 60 560 15 HOH HOH . G 4 HOH A 61 561 84 HOH HOH . G 4 HOH A 62 562 145 HOH HOH . G 4 HOH A 63 563 98 HOH HOH . G 4 HOH A 64 564 59 HOH HOH . G 4 HOH A 65 565 97 HOH HOH . G 4 HOH A 66 566 81 HOH HOH . G 4 HOH A 67 567 64 HOH HOH . H 4 HOH B 1 501 143 HOH HOH . H 4 HOH B 2 502 13 HOH HOH . H 4 HOH B 3 503 42 HOH HOH . H 4 HOH B 4 504 118 HOH HOH . H 4 HOH B 5 505 8 HOH HOH . H 4 HOH B 6 506 40 HOH HOH . H 4 HOH B 7 507 112 HOH HOH . H 4 HOH B 8 508 51 HOH HOH . H 4 HOH B 9 509 17 HOH HOH . H 4 HOH B 10 510 124 HOH HOH . H 4 HOH B 11 511 137 HOH HOH . H 4 HOH B 12 512 131 HOH HOH . H 4 HOH B 13 513 44 HOH HOH . H 4 HOH B 14 514 62 HOH HOH . H 4 HOH B 15 515 47 HOH HOH . H 4 HOH B 16 516 56 HOH HOH . H 4 HOH B 17 517 151 HOH HOH . H 4 HOH B 18 518 34 HOH HOH . H 4 HOH B 19 519 25 HOH HOH . H 4 HOH B 20 520 149 HOH HOH . H 4 HOH B 21 521 31 HOH HOH . H 4 HOH B 22 522 148 HOH HOH . H 4 HOH B 23 523 36 HOH HOH . H 4 HOH B 24 524 95 HOH HOH . H 4 HOH B 25 525 41 HOH HOH . H 4 HOH B 26 526 115 HOH HOH . H 4 HOH B 27 527 49 HOH HOH . H 4 HOH B 28 528 99 HOH HOH . H 4 HOH B 29 529 78 HOH HOH . H 4 HOH B 30 530 111 HOH HOH . H 4 HOH B 31 531 46 HOH HOH . H 4 HOH B 32 532 26 HOH HOH . H 4 HOH B 33 533 48 HOH HOH . H 4 HOH B 34 534 121 HOH HOH . H 4 HOH B 35 535 110 HOH HOH . H 4 HOH B 36 536 105 HOH HOH . H 4 HOH B 37 537 103 HOH HOH . H 4 HOH B 38 538 5 HOH HOH . H 4 HOH B 39 539 102 HOH HOH . H 4 HOH B 40 540 142 HOH HOH . H 4 HOH B 41 541 58 HOH HOH . H 4 HOH B 42 542 116 HOH HOH . H 4 HOH B 43 543 35 HOH HOH . H 4 HOH B 44 544 108 HOH HOH . H 4 HOH B 45 545 60 HOH HOH . H 4 HOH B 46 546 101 HOH HOH . H 4 HOH B 47 547 100 HOH HOH . H 4 HOH B 48 548 37 HOH HOH . H 4 HOH B 49 549 109 HOH HOH . H 4 HOH B 50 550 63 HOH HOH . H 4 HOH B 51 551 52 HOH HOH . H 4 HOH B 52 552 147 HOH HOH . H 4 HOH B 53 553 43 HOH HOH . H 4 HOH B 54 554 27 HOH HOH . H 4 HOH B 55 555 113 HOH HOH . H 4 HOH B 56 556 61 HOH HOH . H 4 HOH B 57 557 24 HOH HOH . H 4 HOH B 58 558 57 HOH HOH . H 4 HOH B 59 559 39 HOH HOH . H 4 HOH B 60 560 23 HOH HOH . H 4 HOH B 61 561 104 HOH HOH . H 4 HOH B 62 562 107 HOH HOH . H 4 HOH B 63 563 120 HOH HOH . H 4 HOH B 64 564 114 HOH HOH . H 4 HOH B 65 565 38 HOH HOH . H 4 HOH B 66 566 130 HOH HOH . H 4 HOH B 67 567 2 HOH HOH . H 4 HOH B 68 568 32 HOH HOH . H 4 HOH B 69 569 6 HOH HOH . H 4 HOH B 70 570 3 HOH HOH . H 4 HOH B 71 571 94 HOH HOH . H 4 HOH B 72 572 12 HOH HOH . H 4 HOH B 73 573 117 HOH HOH . H 4 HOH B 74 574 135 HOH HOH . H 4 HOH B 75 575 10 HOH HOH . H 4 HOH B 76 576 4 HOH HOH . H 4 HOH B 77 577 133 HOH HOH . H 4 HOH B 78 578 45 HOH HOH . H 4 HOH B 79 579 122 HOH HOH . H 4 HOH B 80 580 11 HOH HOH . H 4 HOH B 81 581 106 HOH HOH . H 4 HOH B 82 582 50 HOH HOH . H 4 HOH B 83 583 144 HOH HOH . H 4 HOH B 84 584 7 HOH HOH . H 4 HOH B 85 585 156 HOH HOH . H 4 HOH B 86 586 119 HOH HOH . H 4 HOH B 87 587 152 HOH HOH . H 4 HOH B 88 588 157 HOH HOH . H 4 HOH B 89 589 9 HOH HOH . H 4 HOH B 90 590 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 -14.707 10.061 12 1 28.87 ? PA NAD 402 A 1 HETATM 2 O O1A NAD . . . D 3 -15.998 9.612 12.597 1 25.8 ? O1A NAD 402 A 1 HETATM 3 O O2A NAD . . . D 3 -13.94 11.307 12.249 1 24.3 ? O2A NAD 402 A 1 HETATM 4 O O5B NAD . . . D 3 -13.722 8.81 11.826 1 25.42 ? O5B NAD 402 A 1 HETATM 5 C C5B NAD . . . D 3 -12.358 8.957 11.557 1 27.27 ? C5B NAD 402 A 1 HETATM 6 C C4B NAD . . . D 3 -11.591 7.785 12.182 1 29.38 ? C4B NAD 402 A 1 HETATM 7 O O4B NAD . . . D 3 -10.328 7.756 11.506 1 29.54 ? O4B NAD 402 A 1 HETATM 8 C C3B NAD . . . D 3 -11.404 7.956 13.697 1 28.88 ? C3B NAD 402 A 1 HETATM 9 O O3B NAD . . . D 3 -11.672 6.731 14.459 1 24.89 ? O3B NAD 402 A 1 HETATM 10 C C2B NAD . . . D 3 -9.951 8.363 13.67 1 28.2 ? C2B NAD 402 A 1 HETATM 11 O O2B NAD . . . D 3 -9.288 8.017 14.833 1 26.74 ? O2B NAD 402 A 1 HETATM 12 C C1B NAD . . . D 3 -9.365 7.582 12.502 1 29.18 ? C1B NAD 402 A 1 HETATM 13 N N9A NAD . . . D 3 -7.995 7.98 12.08 1 29.41 ? N9A NAD 402 A 1 HETATM 14 C C8A NAD . . . D 3 -7.475 9.202 11.77 1 30.69 ? C8A NAD 402 A 1 HETATM 15 N N7A NAD . . . D 3 -6.147 9.093 11.462 1 29.59 ? N7A NAD 402 A 1 HETATM 16 C C5A NAD . . . D 3 -5.807 7.794 11.611 1 28.23 ? C5A NAD 402 A 1 HETATM 17 C C6A NAD . . . D 3 -4.6 6.999 11.444 1 26.68 ? C6A NAD 402 A 1 HETATM 18 N N6A NAD . . . D 3 -3.521 7.644 11.075 1 28.38 ? N6A NAD 402 A 1 HETATM 19 N N1A NAD . . . D 3 -4.586 5.667 11.629 1 26.84 ? N1A NAD 402 A 1 HETATM 20 C C2A NAD . . . D 3 -5.741 5.081 12.014 1 27.95 ? C2A NAD 402 A 1 HETATM 21 N N3A NAD . . . D 3 -6.906 5.748 12.172 1 28.07 ? N3A NAD 402 A 1 HETATM 22 C C4A NAD . . . D 3 -7.002 7.071 11.999 1 29.08 ? C4A NAD 402 A 1 HETATM 23 O O3 NAD . . . D 3 -15.005 10.19 10.405 1 26.42 ? O3 NAD 402 A 1 HETATM 24 P PN NAD . . . D 3 -15.972 9.348 9.457 1 26.59 ? PN NAD 402 A 1 HETATM 25 O O1N NAD . . . D 3 -15.842 7.915 9.791 1 23.87 ? O1N NAD 402 A 1 HETATM 26 O O2N NAD . . . D 3 -17.326 10.01 9.404 1 25.15 ? O2N NAD 402 A 1 HETATM 27 O O5D NAD . . . D 3 -15.3 9.663 8.067 1 27.45 ? O5D NAD 402 A 1 HETATM 28 C C5D NAD . . . D 3 -14.214 8.837 7.619 1 27.75 ? C5D NAD 402 A 1 HETATM 29 C C4D NAD . . . D 3 -13.732 9.254 6.234 1 27.74 ? C4D NAD 402 A 1 HETATM 30 O O4D NAD . . . D 3 -14.568 8.641 5.224 1 31.35 ? O4D NAD 402 A 1 HETATM 31 C C3D NAD . . . D 3 -13.768 10.779 5.992 1 29.89 ? C3D NAD 402 A 1 HETATM 32 O O3D NAD . . . D 3 -12.567 11.171 5.292 1 33.46 ? O3D NAD 402 A 1 HETATM 33 C C2D NAD . . . D 3 -15.052 10.909 5.175 1 31.06 ? C2D NAD 402 A 1 HETATM 34 O O2D NAD . . . D 3 -15.245 12.039 4.347 1 32.94 ? O2D NAD 402 A 1 HETATM 35 C C1D NAD . . . D 3 -14.987 9.67 4.315 1 31.68 ? C1D NAD 402 A 1 HETATM 36 N N1N NAD . . . D 3 -16.255 9.3 3.663 1 35.95 ? N1N NAD 402 A 1 HETATM 37 C C2N NAD . . . D 3 -16.16 8.809 2.421 1 34.14 ? C2N NAD 402 A 1 HETATM 38 C C3N NAD . . . D 3 -17.272 8.414 1.706 1 33.89 ? C3N NAD 402 A 1 HETATM 39 C C7N NAD . . . D 3 -17.137 7.883 0.3 1 36.67 ? C7N NAD 402 A 1 HETATM 40 O O7N NAD . . . D 3 -18.153 7.902 -0.404 1 37.9 ? O7N NAD 402 A 1 HETATM 41 N N7N NAD . . . D 3 -15.966 7.367 -0.149 1 35 ? N7N NAD 402 A 1 HETATM 42 C C4N NAD . . . D 3 -18.521 8.501 2.317 1 34.24 ? C4N NAD 402 A 1 HETATM 43 C C5N NAD . . . D 3 -18.637 8.984 3.598 1 30.84 ? C5N NAD 402 A 1 HETATM 44 C C6N NAD . . . D 3 -17.477 9.391 4.248 1 34.41 ? C6N NAD 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #