data_5ZIH # _model_server_result.job_id DlrIdBFYLLydHgkFLuOl9w _model_server_result.datetime_utc '2024-11-04 22:33:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 5ZIH # _exptl.entry_id 5ZIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 19 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZIH _cell.length_a 60.99 _cell.length_b 81.44 _cell.length_c 170.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 69 1_555 B SG CYS 66 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 73 A CYS 76 1_555 B SG CYS 75 B CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf3 A SG CYS 75 A CYS 78 1_555 B SG CYS 73 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? covale ? covale1 A C ALA 295 A ALA 298 1_555 A N LYR 296 A LYR 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C LYR 296 A LYR 299 1_555 A N GLU 297 A GLU 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 B C ALA 295 B ALA 298 1_555 B N LYR 296 B LYR 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C LYR 296 B LYR 299 1_555 B N GLU 297 B GLU 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 309 n n C10 C9 OLC doub 310 n n C10 C11 OLC sing 311 n n C9 C8 OLC sing 312 n n C17 C16 OLC sing 313 z n C11 C12 OLC sing 314 n n C8 C7 OLC sing 315 n n C24 C22 OLC sing 316 n n C24 O25 OLC sing 317 n n C16 C15 OLC sing 318 n n C12 C13 OLC sing 319 n n C7 C6 OLC sing 320 n n C15 C14 OLC sing 321 n n C13 C14 OLC sing 322 n n C6 C5 OLC sing 323 n n C5 C4 OLC sing 324 n n C4 C3 OLC sing 325 n n C3 C2 OLC sing 326 n n C2 C1 OLC sing 327 n n C21 C22 OLC sing 328 n n C21 O20 OLC sing 329 n n C1 O19 OLC doub 330 n n C1 O20 OLC sing 331 n n C22 O23 OLC sing 332 n n C18 H18 OLC sing 333 n n C18 H18A OLC sing 334 n n C18 H18B OLC sing 335 n n C10 H10 OLC sing 336 n n C9 H9 OLC sing 337 n n C17 H17 OLC sing 338 n n C17 H17A OLC sing 339 n n C11 H11 OLC sing 340 n n C11 H11A OLC sing 341 n n C8 H8 OLC sing 342 n n C8 H8A OLC sing 343 n n C24 H24 OLC sing 344 n n C24 H24A OLC sing 345 n n C16 H16 OLC sing 346 n n C16 H16A OLC sing 347 n n C12 H12 OLC sing 348 n n C12 H12A OLC sing 349 n n C7 H7 OLC sing 350 n n C7 H7A OLC sing 351 n n C15 H15 OLC sing 352 n n C15 H15A OLC sing 353 n n C13 H13 OLC sing 354 n n C13 H13A OLC sing 355 n n C6 H6 OLC sing 356 n n C6 H6A OLC sing 357 n n C14 H14 OLC sing 358 n n C14 H14A OLC sing 359 n n C5 H5 OLC sing 360 n n C5 H5A OLC sing 361 n n C4 H4 OLC sing 362 n n C4 H4A OLC sing 363 n n C3 H3 OLC sing 364 n n C3 H3A OLC sing 365 n n C2 H2 OLC sing 366 n n C2 H2A OLC sing 367 n n C21 H21 OLC sing 368 n n C21 H21A OLC sing 369 n n C22 H22 OLC sing 370 n n O25 HO25 OLC sing 371 n n O23 HO23 OLC sing 372 n n # _atom_sites.entry_id 5ZIH _atom_sites.fract_transf_matrix[1][1] 0.016396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 401 2 OLC OLC . D 2 OLC A 1 402 7 OLC OLC . E 2 OLC A 1 403 8 OLC OLC . F 2 OLC A 1 404 9 OLC OLC . G 2 OLC A 1 405 10 OLC OLC . H 2 OLC A 1 406 15 OLC OLC . I 2 OLC A 1 407 16 OLC OLC . J 2 OLC B 1 401 1 OLC OLC . K 2 OLC B 1 402 3 OLC OLC . L 2 OLC B 1 403 4 OLC OLC . M 2 OLC B 1 404 5 OLC OLC . N 2 OLC B 1 405 6 OLC OLC . O 2 OLC B 1 406 11 OLC OLC . P 2 OLC B 1 407 12 OLC OLC . Q 2 OLC B 1 408 13 OLC OLC . R 2 OLC B 1 409 14 OLC OLC . S 2 OLC B 1 410 17 OLC OLC . T 2 OLC B 1 411 18 OLC OLC . U 2 OLC B 1 412 19 OLC OLC . V 3 HOH A 1 501 35 HOH HOH . V 3 HOH A 2 502 13 HOH HOH . V 3 HOH A 3 503 10 HOH HOH . V 3 HOH A 4 504 3 HOH HOH . V 3 HOH A 5 505 12 HOH HOH . V 3 HOH A 6 506 6 HOH HOH . V 3 HOH A 7 507 21 HOH HOH . V 3 HOH A 8 508 34 HOH HOH . V 3 HOH A 9 509 29 HOH HOH . V 3 HOH A 10 510 22 HOH HOH . V 3 HOH A 11 511 26 HOH HOH . V 3 HOH A 12 512 4 HOH HOH . V 3 HOH A 13 513 25 HOH HOH . V 3 HOH A 14 514 18 HOH HOH . V 3 HOH A 15 515 32 HOH HOH . V 3 HOH A 16 516 33 HOH HOH . V 3 HOH A 17 517 28 HOH HOH . W 3 HOH B 1 501 7 HOH HOH . W 3 HOH B 2 502 23 HOH HOH . W 3 HOH B 3 503 19 HOH HOH . W 3 HOH B 4 504 30 HOH HOH . W 3 HOH B 5 505 24 HOH HOH . W 3 HOH B 6 506 31 HOH HOH . W 3 HOH B 7 507 9 HOH HOH . W 3 HOH B 8 508 15 HOH HOH . W 3 HOH B 9 509 11 HOH HOH . W 3 HOH B 10 510 17 HOH HOH . W 3 HOH B 11 511 5 HOH HOH . W 3 HOH B 12 512 2 HOH HOH . W 3 HOH B 13 513 20 HOH HOH . W 3 HOH B 14 514 14 HOH HOH . W 3 HOH B 15 515 37 HOH HOH . W 3 HOH B 16 516 1 HOH HOH . W 3 HOH B 17 517 36 HOH HOH . W 3 HOH B 18 518 27 HOH HOH . W 3 HOH B 19 519 16 HOH HOH . W 3 HOH B 20 520 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . F 2 -5.833 -7.926 133.409 1 49.82 ? C10 OLC 404 A 1 HETATM 2 C C9 OLC . . . F 2 -4.851 -8.774 133.659 1 41.62 ? C9 OLC 404 A 1 HETATM 3 C C11 OLC . . . F 2 -6.024 -6.673 134.261 1 52.47 ? C11 OLC 404 A 1 HETATM 4 C C8 OLC . . . F 2 -3.87 -8.529 134.805 1 35.99 ? C8 OLC 404 A 1 HETATM 5 C C24 OLC . . . F 2 0.595 -3.244 143.62 1 62.31 ? C24 OLC 404 A 1 HETATM 6 C C7 OLC . . . F 2 -3.828 -9.746 135.73 1 25.15 ? C7 OLC 404 A 1 HETATM 7 C C6 OLC . . . F 2 -3.954 -9.28 137.181 1 38.78 ? C6 OLC 404 A 1 HETATM 8 C C5 OLC . . . F 2 -2.589 -8.832 137.709 1 36.13 ? C5 OLC 404 A 1 HETATM 9 C C4 OLC . . . F 2 -2.729 -7.612 138.625 1 40.99 ? C4 OLC 404 A 1 HETATM 10 C C3 OLC . . . F 2 -1.388 -7.329 139.304 1 28.87 ? C3 OLC 404 A 1 HETATM 11 C C2 OLC . . . F 2 -1.256 -5.846 139.653 1 25.8 ? C2 OLC 404 A 1 HETATM 12 C C21 OLC . . . F 2 -0.573 -5.429 143.35 1 46.66 ? C21 OLC 404 A 1 HETATM 13 C C1 OLC . . . F 2 -1.404 -5.62 141.162 1 43.42 ? C1 OLC 404 A 1 HETATM 14 C C22 OLC . . . F 2 0.654 -4.736 143.943 1 52.49 ? C22 OLC 404 A 1 HETATM 15 O O19 OLC . . . F 2 -2.447 -5.27 141.607 1 51.48 ? O19 OLC 404 A 1 HETATM 16 O O25 OLC . . . F 2 1.811 -2.851 143.045 1 44.01 ? O25 OLC 404 A 1 HETATM 17 O O23 OLC . . . F 2 0.663 -4.902 145.332 1 61.76 ? O23 OLC 404 A 1 HETATM 18 O O20 OLC . . . F 2 -0.316 -5.805 142.025 1 39.95 ? O20 OLC 404 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #