data_5ZIK
#
_model_server_result.job_id            Vb0L9KzCAxMgt8euK2EDzA 
_model_server_result.datetime_utc      '2024-12-28 08:00:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zik 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":403}' 
#
_entry.id    5ZIK 
#
_exptl.entry_id    5ZIK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZIK 
_cell.length_a            131.31 
_cell.length_b            131.31 
_cell.length_c            156.848 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZIK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,I 1 1 
B,G,H,J 2 1 
C,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5ZIK 
_atom_sites.fract_transf_matrix[1][1]    0.007616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007616 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 401 2 SO4 SO4 . 
E 2 SO4 A 1 402 4 SO4 SO4 . 
F 3 GOL A 1 403 6 GOL GOL . 
G 2 SO4 B 1 401 5 SO4 SO4 . 
H 2 SO4 B 1 402 8 SO4 SO4 . 
I 4 HOH A 1 501 221 HOH HOH . 
I 4 HOH A 2 502 184 HOH HOH . 
I 4 HOH A 3 503 69 HOH HOH . 
I 4 HOH A 4 504 212 HOH HOH . 
I 4 HOH A 5 505 48 HOH HOH . 
I 4 HOH A 6 506 126 HOH HOH . 
I 4 HOH A 7 507 110 HOH HOH . 
I 4 HOH A 8 508 90 HOH HOH . 
I 4 HOH A 9 509 57 HOH HOH . 
I 4 HOH A 10 510 5 HOH HOH . 
I 4 HOH A 11 511 6 HOH HOH . 
I 4 HOH A 12 512 29 HOH HOH . 
I 4 HOH A 13 513 197 HOH HOH . 
I 4 HOH A 14 514 12 HOH HOH . 
I 4 HOH A 15 515 129 HOH HOH . 
I 4 HOH A 16 516 216 HOH HOH . 
I 4 HOH A 17 517 21 HOH HOH . 
I 4 HOH A 18 518 148 HOH HOH . 
I 4 HOH A 19 519 109 HOH HOH . 
I 4 HOH A 20 520 113 HOH HOH . 
I 4 HOH A 21 521 167 HOH HOH . 
I 4 HOH A 22 522 64 HOH HOH . 
I 4 HOH A 23 523 268 HOH HOH . 
I 4 HOH A 24 524 223 HOH HOH . 
I 4 HOH A 25 525 35 HOH HOH . 
I 4 HOH A 26 526 18 HOH HOH . 
I 4 HOH A 27 527 266 HOH HOH . 
I 4 HOH A 28 528 27 HOH HOH . 
I 4 HOH A 29 529 40 HOH HOH . 
I 4 HOH A 30 530 161 HOH HOH . 
I 4 HOH A 31 531 79 HOH HOH . 
I 4 HOH A 32 532 85 HOH HOH . 
I 4 HOH A 33 533 54 HOH HOH . 
I 4 HOH A 34 534 58 HOH HOH . 
I 4 HOH A 35 535 56 HOH HOH . 
I 4 HOH A 36 536 165 HOH HOH . 
I 4 HOH A 37 537 75 HOH HOH . 
I 4 HOH A 38 538 344 HOH HOH . 
I 4 HOH A 39 539 163 HOH HOH . 
I 4 HOH A 40 540 81 HOH HOH . 
I 4 HOH A 41 541 33 HOH HOH . 
I 4 HOH A 42 542 262 HOH HOH . 
I 4 HOH A 43 543 4 HOH HOH . 
I 4 HOH A 44 544 261 HOH HOH . 
I 4 HOH A 45 545 215 HOH HOH . 
I 4 HOH A 46 546 3 HOH HOH . 
I 4 HOH A 47 547 245 HOH HOH . 
I 4 HOH A 48 548 19 HOH HOH . 
I 4 HOH A 49 549 111 HOH HOH . 
I 4 HOH A 50 550 26 HOH HOH . 
I 4 HOH A 51 551 156 HOH HOH . 
I 4 HOH A 52 552 74 HOH HOH . 
I 4 HOH A 53 553 28 HOH HOH . 
I 4 HOH A 54 554 23 HOH HOH . 
I 4 HOH A 55 555 325 HOH HOH . 
I 4 HOH A 56 556 89 HOH HOH . 
I 4 HOH A 57 557 206 HOH HOH . 
I 4 HOH A 58 558 96 HOH HOH . 
I 4 HOH A 59 559 95 HOH HOH . 
I 4 HOH A 60 560 213 HOH HOH . 
I 4 HOH A 61 561 324 HOH HOH . 
I 4 HOH A 62 562 234 HOH HOH . 
I 4 HOH A 63 563 337 HOH HOH . 
I 4 HOH A 64 564 30 HOH HOH . 
I 4 HOH A 65 565 108 HOH HOH . 
I 4 HOH A 66 566 357 HOH HOH . 
I 4 HOH A 67 567 243 HOH HOH . 
I 4 HOH A 68 568 322 HOH HOH . 
I 4 HOH A 69 569 332 HOH HOH . 
I 4 HOH A 70 570 94 HOH HOH . 
I 4 HOH A 71 571 331 HOH HOH . 
I 4 HOH A 72 572 230 HOH HOH . 
I 4 HOH A 73 573 53 HOH HOH . 
I 4 HOH A 74 574 249 HOH HOH . 
I 4 HOH A 75 575 256 HOH HOH . 
I 4 HOH A 76 576 222 HOH HOH . 
I 4 HOH A 77 577 134 HOH HOH . 
I 4 HOH A 78 578 168 HOH HOH . 
I 4 HOH A 79 579 334 HOH HOH . 
I 4 HOH A 80 580 211 HOH HOH . 
I 4 HOH A 81 581 239 HOH HOH . 
I 4 HOH A 82 582 235 HOH HOH . 
I 4 HOH A 83 583 121 HOH HOH . 
I 4 HOH A 84 584 264 HOH HOH . 
I 4 HOH A 85 585 120 HOH HOH . 
I 4 HOH A 86 586 259 HOH HOH . 
I 4 HOH A 87 587 246 HOH HOH . 
I 4 HOH A 88 588 265 HOH HOH . 
I 4 HOH A 89 589 358 HOH HOH . 
I 4 HOH A 90 590 330 HOH HOH . 
I 4 HOH A 91 591 333 HOH HOH . 
I 4 HOH A 92 592 345 HOH HOH . 
I 4 HOH A 93 593 340 HOH HOH . 
I 4 HOH A 94 594 263 HOH HOH . 
I 4 HOH A 95 595 242 HOH HOH . 
I 4 HOH A 96 596 323 HOH HOH . 
I 4 HOH A 97 597 260 HOH HOH . 
I 4 HOH A 98 598 224 HOH HOH . 
I 4 HOH A 99 599 257 HOH HOH . 
I 4 HOH A 100 600 258 HOH HOH . 
J 4 HOH B 1 501 55 HOH HOH . 
J 4 HOH B 2 502 274 HOH HOH . 
J 4 HOH B 3 503 189 HOH HOH . 
J 4 HOH B 4 504 187 HOH HOH . 
J 4 HOH B 5 505 310 HOH HOH . 
J 4 HOH B 6 506 101 HOH HOH . 
J 4 HOH B 7 507 153 HOH HOH . 
J 4 HOH B 8 508 2 HOH HOH . 
J 4 HOH B 9 509 24 HOH HOH . 
J 4 HOH B 10 510 43 HOH HOH . 
J 4 HOH B 11 511 10 HOH HOH . 
J 4 HOH B 12 512 8 HOH HOH . 
J 4 HOH B 13 513 76 HOH HOH . 
J 4 HOH B 14 514 70 HOH HOH . 
J 4 HOH B 15 515 185 HOH HOH . 
J 4 HOH B 16 516 141 HOH HOH . 
J 4 HOH B 17 517 191 HOH HOH . 
J 4 HOH B 18 518 99 HOH HOH . 
J 4 HOH B 19 519 50 HOH HOH . 
J 4 HOH B 20 520 66 HOH HOH . 
J 4 HOH B 21 521 41 HOH HOH . 
J 4 HOH B 22 522 63 HOH HOH . 
J 4 HOH B 23 523 87 HOH HOH . 
J 4 HOH B 24 524 97 HOH HOH . 
J 4 HOH B 25 525 65 HOH HOH . 
J 4 HOH B 26 526 60 HOH HOH . 
J 4 HOH B 27 527 39 HOH HOH . 
J 4 HOH B 28 528 137 HOH HOH . 
J 4 HOH B 29 529 272 HOH HOH . 
J 4 HOH B 30 530 78 HOH HOH . 
J 4 HOH B 31 531 83 HOH HOH . 
J 4 HOH B 32 532 166 HOH HOH . 
J 4 HOH B 33 533 9 HOH HOH . 
J 4 HOH B 34 534 72 HOH HOH . 
J 4 HOH B 35 535 82 HOH HOH . 
J 4 HOH B 36 536 122 HOH HOH . 
J 4 HOH B 37 537 248 HOH HOH . 
J 4 HOH B 38 538 7 HOH HOH . 
J 4 HOH B 39 539 172 HOH HOH . 
J 4 HOH B 40 540 253 HOH HOH . 
J 4 HOH B 41 541 77 HOH HOH . 
J 4 HOH B 42 542 104 HOH HOH . 
J 4 HOH B 43 543 349 HOH HOH . 
J 4 HOH B 44 544 350 HOH HOH . 
J 4 HOH B 45 545 183 HOH HOH . 
J 4 HOH B 46 546 270 HOH HOH . 
J 4 HOH B 47 547 317 HOH HOH . 
J 4 HOH B 48 548 338 HOH HOH . 
J 4 HOH B 49 549 251 HOH HOH . 
J 4 HOH B 50 550 273 HOH HOH . 
J 4 HOH B 51 551 271 HOH HOH . 
J 4 HOH B 52 552 339 HOH HOH . 
J 4 HOH B 53 553 359 HOH HOH . 
J 4 HOH B 54 554 132 HOH HOH . 
J 4 HOH B 55 555 275 HOH HOH . 
J 4 HOH B 56 556 352 HOH HOH . 
J 4 HOH B 57 557 315 HOH HOH . 
J 4 HOH B 58 558 336 HOH HOH . 
J 4 HOH B 59 559 326 HOH HOH . 
J 4 HOH B 60 560 125 HOH HOH . 
J 4 HOH B 61 561 335 HOH HOH . 
J 4 HOH B 62 562 327 HOH HOH . 
J 4 HOH B 63 563 328 HOH HOH . 
J 4 HOH B 64 564 360 HOH HOH . 
J 4 HOH B 65 565 155 HOH HOH . 
J 4 HOH B 66 566 181 HOH HOH . 
J 4 HOH B 67 567 353 HOH HOH . 
J 4 HOH B 68 568 307 HOH HOH . 
J 4 HOH B 69 569 329 HOH HOH . 
J 4 HOH B 70 570 361 HOH HOH . 
K 4 HOH C 1 401 117 HOH HOH . 
K 4 HOH C 2 402 71 HOH HOH . 
K 4 HOH C 3 403 15 HOH HOH . 
K 4 HOH C 4 404 13 HOH HOH . 
K 4 HOH C 5 405 351 HOH HOH . 
K 4 HOH C 6 406 38 HOH HOH . 
K 4 HOH C 7 407 22 HOH HOH . 
K 4 HOH C 8 408 62 HOH HOH . 
K 4 HOH C 9 409 299 HOH HOH . 
K 4 HOH C 10 410 295 HOH HOH . 
K 4 HOH C 11 411 346 HOH HOH . 
K 4 HOH C 12 412 276 HOH HOH . 
K 4 HOH C 13 413 170 HOH HOH . 
K 4 HOH C 14 414 303 HOH HOH . 
K 4 HOH C 15 415 290 HOH HOH . 
K 4 HOH C 16 416 192 HOH HOH . 
K 4 HOH C 17 417 139 HOH HOH . 
K 4 HOH C 18 418 305 HOH HOH . 
K 4 HOH C 19 419 67 HOH HOH . 
K 4 HOH C 20 420 297 HOH HOH . 
K 4 HOH C 21 421 88 HOH HOH . 
K 4 HOH C 22 422 32 HOH HOH . 
K 4 HOH C 23 423 46 HOH HOH . 
K 4 HOH C 24 424 1 HOH HOH . 
K 4 HOH C 25 425 140 HOH HOH . 
K 4 HOH C 26 426 45 HOH HOH . 
K 4 HOH C 27 427 150 HOH HOH . 
K 4 HOH C 28 428 201 HOH HOH . 
K 4 HOH C 29 429 128 HOH HOH . 
K 4 HOH C 30 430 296 HOH HOH . 
K 4 HOH C 31 431 318 HOH HOH . 
K 4 HOH C 32 432 282 HOH HOH . 
K 4 HOH C 33 433 11 HOH HOH . 
K 4 HOH C 34 434 281 HOH HOH . 
K 4 HOH C 35 435 91 HOH HOH . 
K 4 HOH C 36 436 292 HOH HOH . 
K 4 HOH C 37 437 320 HOH HOH . 
K 4 HOH C 38 438 278 HOH HOH . 
K 4 HOH C 39 439 354 HOH HOH . 
K 4 HOH C 40 440 288 HOH HOH . 
K 4 HOH C 41 441 47 HOH HOH . 
K 4 HOH C 42 442 17 HOH HOH . 
K 4 HOH C 43 443 151 HOH HOH . 
K 4 HOH C 44 444 284 HOH HOH . 
K 4 HOH C 45 445 355 HOH HOH . 
K 4 HOH C 46 446 103 HOH HOH . 
K 4 HOH C 47 447 61 HOH HOH . 
K 4 HOH C 48 448 51 HOH HOH . 
K 4 HOH C 49 449 285 HOH HOH . 
K 4 HOH C 50 450 287 HOH HOH . 
K 4 HOH C 51 451 279 HOH HOH . 
K 4 HOH C 52 452 154 HOH HOH . 
K 4 HOH C 53 453 131 HOH HOH . 
K 4 HOH C 54 454 200 HOH HOH . 
K 4 HOH C 55 455 86 HOH HOH . 
K 4 HOH C 56 456 124 HOH HOH . 
K 4 HOH C 57 457 100 HOH HOH . 
K 4 HOH C 58 458 280 HOH HOH . 
K 4 HOH C 59 459 277 HOH HOH . 
K 4 HOH C 60 460 158 HOH HOH . 
K 4 HOH C 61 461 112 HOH HOH . 
K 4 HOH C 62 462 356 HOH HOH . 
K 4 HOH C 63 463 300 HOH HOH . 
K 4 HOH C 64 464 304 HOH HOH . 
K 4 HOH C 65 465 286 HOH HOH . 
K 4 HOH C 66 466 319 HOH HOH . 
K 4 HOH C 67 467 289 HOH HOH . 
K 4 HOH C 68 468 302 HOH HOH . 
K 4 HOH C 69 469 321 HOH HOH . 
K 4 HOH C 70 470 105 HOH HOH . 
K 4 HOH C 71 471 291 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 39.879 78.095 4.225 1 81.58 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . F 3 40.566 76.888 4.353 1 77.59 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . F 3 39.723 78.364 2.709 1 87.06 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . F 3 38.977 77.378 2.084 1 90.76 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . F 3 39.05 79.755 2.612 1 86.53 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . F 3 38.865 80.02 1.256 1 83.9 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              92 
_model_server_stats.parse_time_ms           45 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           387 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#