data_5ZIS
#
_model_server_result.job_id            ZJ2UhrY6jr1U3ZhIX1nZIg 
_model_server_result.datetime_utc      '2024-11-28 07:58:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zis 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    5ZIS 
#
_exptl.entry_id    5ZIS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              615.58 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE PROTOPORPHYRIN IX' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZIS 
_cell.length_a            104.76 
_cell.length_b            155.32 
_cell.length_c            208.98 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZIS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 400 A CYS 400 1_555 E MN MNH . A MNH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc2 B SG CYS 400 B CYS 400 1_555 F MN MNH . B MNH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc3 C SG CYS 400 C CYS 400 1_555 G MN MNH . C MNH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc4 D SG CYS 400 D CYS 400 1_555 H MN MNH . D MNH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
#
_chem_comp.formula           'C34 H32 Mn N4 O4 4' 
_chem_comp.formula_weight    615.58 
_chem_comp.id                MNH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE PROTOPORPHYRIN IX' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
MN NA MNH sing 235 n n 
MN NB MNH sing 236 n n 
MN NC MNH sing 237 n n 
MN ND MNH sing 238 n n 
CHA C1A MNH doub 239 n y 
CHA C4D MNH sing 240 n y 
CHA HHA MNH sing 241 n n 
CHB C4A MNH doub 242 n y 
CHB C1B MNH sing 243 n y 
CHB HHB MNH sing 244 n n 
CHC C4B MNH doub 245 n y 
CHC C1C MNH sing 246 n y 
CHC HHC MNH sing 247 n n 
CHD C4C MNH sing 248 n y 
CHD C1D MNH doub 249 n y 
CHD HHD MNH sing 250 n n 
NA C1A MNH sing 251 n y 
NA C4A MNH sing 252 n y 
C1A C2A MNH sing 253 n y 
C2A C3A MNH doub 254 n y 
C2A CAA MNH sing 255 n n 
C3A C4A MNH sing 256 n y 
C3A CMA MNH sing 257 n n 
CMA HMA1 MNH sing 258 n n 
CMA HMA2 MNH sing 259 n n 
CMA HMA3 MNH sing 260 n n 
CAA CBA MNH sing 261 n n 
CAA HAA1 MNH sing 262 n n 
CAA HAA2 MNH sing 263 n n 
CBA CGA MNH sing 264 n n 
CBA HBA1 MNH sing 265 n n 
CBA HBA2 MNH sing 266 n n 
CGA O1A MNH sing 267 n n 
CGA O2A MNH doub 268 n n 
O1A H1A MNH sing 269 n n 
NB C1B MNH doub 270 n y 
NB C4B MNH sing 271 n y 
C1B C2B MNH sing 272 n n 
C2B C3B MNH doub 273 n n 
C2B CMB MNH sing 274 n n 
C3B C4B MNH sing 275 n n 
C3B CAB MNH sing 276 n n 
CMB HMB1 MNH sing 277 n n 
CMB HMB2 MNH sing 278 n n 
CMB HMB3 MNH sing 279 n n 
CAB CBB MNH doub 280 n n 
CAB HAB MNH sing 281 n n 
CBB HBB1 MNH sing 282 n n 
CBB HBB2 MNH sing 283 n n 
NC C1C MNH sing 284 n y 
NC C4C MNH sing 285 n y 
C1C C2C MNH doub 286 n y 
C2C C3C MNH sing 287 n y 
C2C CMC MNH sing 288 n n 
C3C C4C MNH doub 289 n y 
C3C CAC MNH sing 290 n n 
CMC HMC1 MNH sing 291 n n 
CMC HMC2 MNH sing 292 n n 
CMC HMC3 MNH sing 293 n n 
CAC CBC MNH doub 294 n n 
CAC HAC MNH sing 295 n n 
CBC HBC1 MNH sing 296 n n 
CBC HBC2 MNH sing 297 n n 
ND C1D MNH sing 298 n y 
ND C4D MNH doub 299 n y 
C1D C2D MNH sing 300 n n 
C2D C3D MNH doub 301 n n 
C2D CMD MNH sing 302 n n 
C3D C4D MNH sing 303 n n 
C3D CAD MNH sing 304 n n 
CMD HMD1 MNH sing 305 n n 
CMD HMD2 MNH sing 306 n n 
CMD HMD3 MNH sing 307 n n 
CAD CBD MNH sing 308 n n 
CAD HAD1 MNH sing 309 n n 
CAD HAD2 MNH sing 310 n n 
CBD CGD MNH sing 311 n n 
CBD HBD1 MNH sing 312 n n 
CBD HBD2 MNH sing 313 n n 
CGD O1D MNH doub 314 n n 
CGD O2D MNH sing 315 n n 
O2D H2D MNH sing 316 n n 
#
_atom_sites.entry_id                     5ZIS 
_atom_sites.fract_transf_matrix[1][1]    0.009546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006438 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MNH A 1 500 500 MNH MNH . 
F 2 MNH B 1 500 500 MNH MNH . 
G 2 MNH C 1 500 500 MNH MNH . 
H 2 MNH D 1 500 500 MNH MNH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 MN MN MNH . . . H 2 102.497 8.176 30.053 1 53.95 ? MN MNH 500 D 1 
HETATM 2 C CHA MNH . . . H 2 105.047 9.175 32.26 1 47.27 ? CHA MNH 500 D 1 
HETATM 3 C CHB MNH . . . H 2 103.268 10.78 27.913 1 55.27 ? CHB MNH 500 D 1 
HETATM 4 C CHC MNH . . . H 2 100.133 7.063 27.72 1 57.15 ? CHC MNH 500 D 1 
HETATM 5 C CHD MNH . . . H 2 101.483 5.693 32.312 1 54.29 ? CHD MNH 500 D 1 
HETATM 6 N NA MNH . . . H 2 103.926 9.714 30.08 1 49.97 ? NA MNH 500 D 1 
HETATM 7 C C1A MNH . . . H 2 104.832 9.948 31.032 1 49.34 ? C1A MNH 500 D 1 
HETATM 8 C C2A MNH . . . H 2 105.593 11.056 30.688 1 56.09 ? C2A MNH 500 D 1 
HETATM 9 C C3A MNH . . . H 2 105.094 11.505 29.473 1 48.59 ? C3A MNH 500 D 1 
HETATM 10 C C4A MNH . . . H 2 104.061 10.64 29.137 1 48.69 ? C4A MNH 500 D 1 
HETATM 11 C CMA MNH . . . H 2 105.58 12.687 28.677 1 44.18 ? CMA MNH 500 D 1 
HETATM 12 C CAA MNH . . . H 2 106.718 11.662 31.498 1 64.79 ? CAA MNH 500 D 1 
HETATM 13 C CBA MNH . . . H 2 106.086 12.669 32.46 1 70.46 ? CBA MNH 500 D 1 
HETATM 14 C CGA MNH . . . H 2 107.121 13.377 33.306 1 75.98 ? CGA MNH 500 D 1 
HETATM 15 O O1A MNH . . . H 2 108.281 12.996 33.308 1 78.23 ? O1A MNH 500 D 1 
HETATM 16 O O2A MNH . . . H 2 106.763 14.42 34.053 1 75.79 ? O2A MNH 500 D 1 
HETATM 17 N NB MNH . . . H 2 101.85 8.849 28.159 1 60.21 ? NB MNH 500 D 1 
HETATM 18 C C1B MNH . . . H 2 102.212 9.884 27.402 1 60.8 ? C1B MNH 500 D 1 
HETATM 19 C C2B MNH . . . H 2 101.598 10.066 26.194 1 58.98 ? C2B MNH 500 D 1 
HETATM 20 C C3B MNH . . . H 2 100.718 8.986 26.187 1 60.11 ? C3B MNH 500 D 1 
HETATM 21 C C4B MNH . . . H 2 100.902 8.277 27.393 1 60.81 ? C4B MNH 500 D 1 
HETATM 22 C CMB MNH . . . H 2 101.848 11.157 25.183 1 57.8 ? CMB MNH 500 D 1 
HETATM 23 C CAB MNH . . . H 2 99.744 8.61 25.134 1 63.99 ? CAB MNH 500 D 1 
HETATM 24 C CBB MNH . . . H 2 99.819 8.865 23.841 1 63.74 ? CBB MNH 500 D 1 
HETATM 25 N NC MNH . . . H 2 101.057 6.639 30.024 1 55.79 ? NC MNH 500 D 1 
HETATM 26 C C1C MNH . . . H 2 100.226 6.358 29.013 1 55.39 ? C1C MNH 500 D 1 
HETATM 27 C C2C MNH . . . H 2 99.426 5.273 29.351 1 58.54 ? C2C MNH 500 D 1 
HETATM 28 C C3C MNH . . . H 2 99.806 4.89 30.631 1 54.8 ? C3C MNH 500 D 1 
HETATM 29 C C4C MNH . . . H 2 100.816 5.764 31.004 1 53.45 ? C4C MNH 500 D 1 
HETATM 30 C CMC MNH . . . H 2 98.367 4.653 28.476 1 62.64 ? CMC MNH 500 D 1 
HETATM 31 C CAC MNH . . . H 2 99.263 3.787 31.463 1 52.41 ? CAC MNH 500 D 1 
HETATM 32 C CBC MNH . . . H 2 98.995 2.555 31.079 1 50 ? CBC MNH 500 D 1 
HETATM 33 N ND MNH . . . H 2 103.149 7.541 31.954 1 54.71 ? ND MNH 500 D 1 
HETATM 34 C C1D MNH . . . H 2 102.615 6.553 32.682 1 53.21 ? C1D MNH 500 D 1 
HETATM 35 C C2D MNH . . . H 2 103.315 6.443 33.874 1 53.83 ? C2D MNH 500 D 1 
HETATM 36 C C3D MNH . . . H 2 104.303 7.407 33.863 1 55 ? C3D MNH 500 D 1 
HETATM 37 C C4D MNH . . . H 2 104.167 8.066 32.651 1 51.66 ? C4D MNH 500 D 1 
HETATM 38 C CMD MNH . . . H 2 103.031 5.456 34.976 1 53.33 ? CMD MNH 500 D 1 
HETATM 39 C CAD MNH . . . H 2 105.329 7.681 34.93 1 59.77 ? CAD MNH 500 D 1 
HETATM 40 C CBD MNH . . . H 2 106.543 6.813 34.624 1 63.23 ? CBD MNH 500 D 1 
HETATM 41 C CGD MNH . . . H 2 107.659 7.134 35.584 1 62.13 ? CGD MNH 500 D 1 
HETATM 42 O O1D MNH . . . H 2 108.215 8.344 35.567 1 60.65 ? O1D MNH 500 D 1 
HETATM 43 O O2D MNH . . . H 2 108.046 6.281 36.368 1 64.43 ? O2D MNH 500 D 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           429 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#