data_5ZIT
#
_model_server_result.job_id            odKQuS1XbPZfjIvwvwXYhA 
_model_server_result.datetime_utc      '2025-03-01 16:09:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zit 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    5ZIT 
#
_exptl.entry_id    5ZIT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZIT 
_cell.length_a            60.683 
_cell.length_b            60.683 
_cell.length_c            360.518 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZIT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     5ZIT 
_atom_sites.fract_transf_matrix[1][1]    0.016479 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002774 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 501 2 NDP NDP . 
C 3 PEG A 1 502 1 PEG PEG . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 3 HOH HOH . 
D 4 HOH A 3 603 2 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 -12.17 1.956 -25.029 1 167.3 ? PA NDP 501 A 1 
HETATM 2 O O1A NDP . . . B 2 -13.258 2.9 -24.647 1 167.42 ? O1A NDP 501 A 1 
HETATM 3 O O2A NDP . . . B 2 -12.467 0.648 -25.708 1 168.86 ? O2A NDP 501 A 1 
HETATM 4 O O5B NDP . . . B 2 -11.077 2.807 -25.942 1 159.83 ? O5B NDP 501 A 1 
HETATM 5 C C5B NDP . . . B 2 -11.543 2.677 -27.263 1 152.7 ? C5B NDP 501 A 1 
HETATM 6 C C4B NDP . . . B 2 -11.62 4.045 -27.957 1 144.64 ? C4B NDP 501 A 1 
HETATM 7 O O4B NDP . . . B 2 -11.901 3.85 -29.344 1 137.38 ? O4B NDP 501 A 1 
HETATM 8 C C3B NDP . . . B 2 -12.727 4.902 -27.279 1 142.31 ? C3B NDP 501 A 1 
HETATM 9 O O3B NDP . . . B 2 -12.216 6.146 -26.89 1 139.8 ? O3B NDP 501 A 1 
HETATM 10 C C2B NDP . . . B 2 -13.828 5.099 -28.382 1 139.18 ? C2B NDP 501 A 1 
HETATM 11 O O2B NDP . . . B 2 -14.108 6.395 -28.683 1 132.86 ? O2B NDP 501 A 1 
HETATM 12 C C1B NDP . . . B 2 -13.231 4.335 -29.64 1 133.58 ? C1B NDP 501 A 1 
HETATM 13 N N9A NDP . . . B 2 -14.09 3.192 -30.116 1 127.24 ? N9A NDP 501 A 1 
HETATM 14 C C8A NDP . . . B 2 -14.189 2.685 -31.441 1 126.53 ? C8A NDP 501 A 1 
HETATM 15 N N7A NDP . . . B 2 -15.037 1.651 -31.566 1 125.82 ? N7A NDP 501 A 1 
HETATM 16 C C5A NDP . . . B 2 -15.54 1.462 -30.262 1 133.15 ? C5A NDP 501 A 1 
HETATM 17 C C6A NDP . . . B 2 -16.463 0.543 -29.749 1 121.99 ? C6A NDP 501 A 1 
HETATM 18 N N6A NDP . . . B 2 -17.032 -0.381 -30.602 1 122.95 ? N6A NDP 501 A 1 
HETATM 19 N N1A NDP . . . B 2 -16.813 0.536 -28.417 1 121.83 ? N1A NDP 501 A 1 
HETATM 20 C C2A NDP . . . B 2 -16.197 1.494 -27.637 1 125.97 ? C2A NDP 501 A 1 
HETATM 21 N N3A NDP . . . B 2 -15.293 2.438 -27.979 1 135.55 ? N3A NDP 501 A 1 
HETATM 22 C C4A NDP . . . B 2 -14.969 2.408 -29.335 1 136.25 ? C4A NDP 501 A 1 
HETATM 23 O O3 NDP . . . B 2 -11.494 1.601 -23.539 1 165.33 ? O3 NDP 501 A 1 
HETATM 24 P PN NDP . . . B 2 -12.569 1.002 -22.484 1 162.64 ? PN NDP 501 A 1 
HETATM 25 O O1N NDP . . . B 2 -12.06 1.331 -21.137 1 161.33 ? O1N NDP 501 A 1 
HETATM 26 O O2N NDP . . . B 2 -14.03 1.153 -22.852 1 164.48 ? O2N NDP 501 A 1 
HETATM 27 O O5D NDP . . . B 2 -12.424 -0.774 -22.457 1 159.04 ? O5D NDP 501 A 1 
HETATM 28 C C5D NDP . . . B 2 -12.491 -1.158 -21.125 1 150.08 ? C5D NDP 501 A 1 
HETATM 29 C C4D NDP . . . B 2 -13.955 -1.153 -20.664 1 149.96 ? C4D NDP 501 A 1 
HETATM 30 O O4D NDP . . . B 2 -14.39 -2.51 -20.415 1 146.72 ? O4D NDP 501 A 1 
HETATM 31 C C3D NDP . . . B 2 -14.049 -0.418 -19.303 1 149.44 ? C3D NDP 501 A 1 
HETATM 32 O O3D NDP . . . B 2 -14.204 0.954 -19.515 1 144.76 ? O3D NDP 501 A 1 
HETATM 33 C C2D NDP . . . B 2 -15.307 -1.049 -18.701 1 149.19 ? C2D NDP 501 A 1 
HETATM 34 O O2D NDP . . . B 2 -16.498 -0.465 -19.144 1 145.8 ? O2D NDP 501 A 1 
HETATM 35 C C1D NDP . . . B 2 -15.239 -2.524 -19.257 1 147.28 ? C1D NDP 501 A 1 
HETATM 36 N N1N NDP . . . B 2 -14.685 -3.47 -18.222 1 147.68 ? N1N NDP 501 A 1 
HETATM 37 C C2N NDP . . . B 2 -14.877 -4.837 -18.369 1 143.13 ? C2N NDP 501 A 1 
HETATM 38 C C3N NDP . . . B 2 -14.719 -5.683 -17.305 1 142.56 ? C3N NDP 501 A 1 
HETATM 39 C C7N NDP . . . B 2 -15.001 -7.118 -17.543 1 141.07 ? C7N NDP 501 A 1 
HETATM 40 O O7N NDP . . . B 2 -15.913 -7.754 -16.996 1 136.42 ? O7N NDP 501 A 1 
HETATM 41 N N7N NDP . . . B 2 -14.179 -7.785 -18.46 1 133.16 ? N7N NDP 501 A 1 
HETATM 42 C C4N NDP . . . B 2 -14.232 -5.194 -15.963 1 140.73 ? C4N NDP 501 A 1 
HETATM 43 C C5N NDP . . . B 2 -13.891 -3.734 -15.974 1 140.28 ? C5N NDP 501 A 1 
HETATM 44 C C6N NDP . . . B 2 -13.951 -3.001 -17.093 1 146.96 ? C6N NDP 501 A 1 
HETATM 45 P P2B NDP . . . B 2 -15.886 6.815 -28.305 1 139.8 ? P2B NDP 501 A 1 
HETATM 46 O O1X NDP . . . B 2 -16.495 5.586 -28.912 1 135.84 ? O1X NDP 501 A 1 
HETATM 47 O O2X NDP . . . B 2 -15.921 6.937 -26.777 1 140.41 ? O2X NDP 501 A 1 
HETATM 48 O O3X NDP . . . B 2 -16.03 8.097 -29.081 1 132.24 ? O3X NDP 501 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#