data_5ZIU # _model_server_result.job_id oLIS3KIH9pN7ZWa16ofYKA _model_server_result.datetime_utc '2024-10-19 20:20:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ziu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5ZIU # _exptl.entry_id 5ZIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZIU _cell.length_a 59.835 _cell.length_b 59.835 _cell.length_c 358.923 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5ZIU _atom_sites.fract_transf_matrix[1][1] 0.016713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 2 GOL A 1 502 2 GOL GOL . D 2 GOL A 1 503 3 GOL GOL . E 3 PEG A 1 504 1 PEG PEG . F 3 PEG A 1 505 2 PEG PEG . G 3 PEG A 1 506 3 PEG PEG . H 4 HOH A 1 601 151 HOH HOH . H 4 HOH A 2 602 123 HOH HOH . H 4 HOH A 3 603 137 HOH HOH . H 4 HOH A 4 604 102 HOH HOH . H 4 HOH A 5 605 15 HOH HOH . H 4 HOH A 6 606 73 HOH HOH . H 4 HOH A 7 607 8 HOH HOH . H 4 HOH A 8 608 148 HOH HOH . H 4 HOH A 9 609 108 HOH HOH . H 4 HOH A 10 610 94 HOH HOH . H 4 HOH A 11 611 17 HOH HOH . H 4 HOH A 12 612 110 HOH HOH . H 4 HOH A 13 613 13 HOH HOH . H 4 HOH A 14 614 120 HOH HOH . H 4 HOH A 15 615 98 HOH HOH . H 4 HOH A 16 616 76 HOH HOH . H 4 HOH A 17 617 127 HOH HOH . H 4 HOH A 18 618 56 HOH HOH . H 4 HOH A 19 619 129 HOH HOH . H 4 HOH A 20 620 115 HOH HOH . H 4 HOH A 21 621 152 HOH HOH . H 4 HOH A 22 622 27 HOH HOH . H 4 HOH A 23 623 100 HOH HOH . H 4 HOH A 24 624 77 HOH HOH . H 4 HOH A 25 625 101 HOH HOH . H 4 HOH A 26 626 83 HOH HOH . H 4 HOH A 27 627 133 HOH HOH . H 4 HOH A 28 628 143 HOH HOH . H 4 HOH A 29 629 16 HOH HOH . H 4 HOH A 30 630 132 HOH HOH . H 4 HOH A 31 631 10 HOH HOH . H 4 HOH A 32 632 103 HOH HOH . H 4 HOH A 33 633 136 HOH HOH . H 4 HOH A 34 634 53 HOH HOH . H 4 HOH A 35 635 116 HOH HOH . H 4 HOH A 36 636 63 HOH HOH . H 4 HOH A 37 637 51 HOH HOH . H 4 HOH A 38 638 82 HOH HOH . H 4 HOH A 39 639 89 HOH HOH . H 4 HOH A 40 640 93 HOH HOH . H 4 HOH A 41 641 47 HOH HOH . H 4 HOH A 42 642 96 HOH HOH . H 4 HOH A 43 643 23 HOH HOH . H 4 HOH A 44 644 19 HOH HOH . H 4 HOH A 45 645 105 HOH HOH . H 4 HOH A 46 646 80 HOH HOH . H 4 HOH A 47 647 107 HOH HOH . H 4 HOH A 48 648 58 HOH HOH . H 4 HOH A 49 649 90 HOH HOH . H 4 HOH A 50 650 113 HOH HOH . H 4 HOH A 51 651 141 HOH HOH . H 4 HOH A 52 652 59 HOH HOH . H 4 HOH A 53 653 26 HOH HOH . H 4 HOH A 54 654 14 HOH HOH . H 4 HOH A 55 655 147 HOH HOH . H 4 HOH A 56 656 109 HOH HOH . H 4 HOH A 57 657 135 HOH HOH . H 4 HOH A 58 658 150 HOH HOH . H 4 HOH A 59 659 41 HOH HOH . H 4 HOH A 60 660 45 HOH HOH . H 4 HOH A 61 661 88 HOH HOH . H 4 HOH A 62 662 131 HOH HOH . H 4 HOH A 63 663 79 HOH HOH . H 4 HOH A 64 664 87 HOH HOH . H 4 HOH A 65 665 111 HOH HOH . H 4 HOH A 66 666 70 HOH HOH . H 4 HOH A 67 667 64 HOH HOH . H 4 HOH A 68 668 52 HOH HOH . H 4 HOH A 69 669 86 HOH HOH . H 4 HOH A 70 670 54 HOH HOH . H 4 HOH A 71 671 140 HOH HOH . H 4 HOH A 72 672 3 HOH HOH . H 4 HOH A 73 673 71 HOH HOH . H 4 HOH A 74 674 43 HOH HOH . H 4 HOH A 75 675 149 HOH HOH . H 4 HOH A 76 676 125 HOH HOH . H 4 HOH A 77 677 117 HOH HOH . H 4 HOH A 78 678 34 HOH HOH . H 4 HOH A 79 679 46 HOH HOH . H 4 HOH A 80 680 128 HOH HOH . H 4 HOH A 81 681 84 HOH HOH . H 4 HOH A 82 682 24 HOH HOH . H 4 HOH A 83 683 4 HOH HOH . H 4 HOH A 84 684 11 HOH HOH . H 4 HOH A 85 685 144 HOH HOH . H 4 HOH A 86 686 85 HOH HOH . H 4 HOH A 87 687 146 HOH HOH . H 4 HOH A 88 688 112 HOH HOH . H 4 HOH A 89 689 21 HOH HOH . H 4 HOH A 90 690 118 HOH HOH . H 4 HOH A 91 691 142 HOH HOH . H 4 HOH A 92 692 124 HOH HOH . H 4 HOH A 93 693 65 HOH HOH . H 4 HOH A 94 694 95 HOH HOH . H 4 HOH A 95 695 42 HOH HOH . H 4 HOH A 96 696 67 HOH HOH . H 4 HOH A 97 697 114 HOH HOH . H 4 HOH A 98 698 22 HOH HOH . H 4 HOH A 99 699 138 HOH HOH . H 4 HOH A 100 700 68 HOH HOH . H 4 HOH A 101 701 39 HOH HOH . H 4 HOH A 102 702 32 HOH HOH . H 4 HOH A 103 703 69 HOH HOH . H 4 HOH A 104 704 119 HOH HOH . H 4 HOH A 105 705 134 HOH HOH . H 4 HOH A 106 706 28 HOH HOH . H 4 HOH A 107 707 12 HOH HOH . H 4 HOH A 108 708 74 HOH HOH . H 4 HOH A 109 709 20 HOH HOH . H 4 HOH A 110 710 49 HOH HOH . H 4 HOH A 111 711 2 HOH HOH . H 4 HOH A 112 712 33 HOH HOH . H 4 HOH A 113 713 35 HOH HOH . H 4 HOH A 114 714 36 HOH HOH . H 4 HOH A 115 715 99 HOH HOH . H 4 HOH A 116 716 91 HOH HOH . H 4 HOH A 117 717 75 HOH HOH . H 4 HOH A 118 718 6 HOH HOH . H 4 HOH A 119 719 106 HOH HOH . H 4 HOH A 120 720 130 HOH HOH . H 4 HOH A 121 721 18 HOH HOH . H 4 HOH A 122 722 61 HOH HOH . H 4 HOH A 123 723 55 HOH HOH . H 4 HOH A 124 724 78 HOH HOH . H 4 HOH A 125 725 50 HOH HOH . H 4 HOH A 126 726 48 HOH HOH . H 4 HOH A 127 727 30 HOH HOH . H 4 HOH A 128 728 40 HOH HOH . H 4 HOH A 129 729 62 HOH HOH . H 4 HOH A 130 730 31 HOH HOH . H 4 HOH A 131 731 9 HOH HOH . H 4 HOH A 132 732 60 HOH HOH . H 4 HOH A 133 733 81 HOH HOH . H 4 HOH A 134 734 5 HOH HOH . H 4 HOH A 135 735 7 HOH HOH . H 4 HOH A 136 736 25 HOH HOH . H 4 HOH A 137 737 72 HOH HOH . H 4 HOH A 138 738 104 HOH HOH . H 4 HOH A 139 739 37 HOH HOH . H 4 HOH A 140 740 126 HOH HOH . H 4 HOH A 141 741 121 HOH HOH . H 4 HOH A 142 742 145 HOH HOH . H 4 HOH A 143 743 1 HOH HOH . H 4 HOH A 144 744 97 HOH HOH . H 4 HOH A 145 745 92 HOH HOH . H 4 HOH A 146 746 44 HOH HOH . H 4 HOH A 147 747 66 HOH HOH . H 4 HOH A 148 748 139 HOH HOH . H 4 HOH A 149 749 57 HOH HOH . H 4 HOH A 150 750 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -12.224 5.08 -39.782 1 20 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . C 2 -13.444 4.521 -39.287 1 20 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . C 2 -12.425 6.414 -40.518 1 20 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . C 2 -12.803 7.475 -39.641 1 20 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . C 2 -11.133 6.843 -41.193 1 20 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . C 2 -11.284 8.092 -41.833 1 20 ? O3 GOL 502 A 1 HETATM 7 H H11 GOL . . . C 2 -11.788 4.337 -40.458 1 20 ? H11 GOL 502 A 1 HETATM 8 H H12 GOL . . . C 2 -11.523 5.205 -38.953 1 20 ? H12 GOL 502 A 1 HETATM 9 H HO1 GOL . . . C 2 -13.62 3.683 -39.735 1 20 ? HO1 GOL 502 A 1 HETATM 10 H H2 GOL . . . C 2 -13.202 6.286 -41.298 1 20 ? H2 GOL 502 A 1 HETATM 11 H HO2 GOL . . . C 2 -13.262 8.162 -40.145 1 20 ? HO2 GOL 502 A 1 HETATM 12 H H31 GOL . . . C 2 -10.866 6.096 -41.944 1 20 ? H31 GOL 502 A 1 HETATM 13 H H32 GOL . . . C 2 -10.309 6.888 -40.474 1 20 ? H32 GOL 502 A 1 HETATM 14 H HO3 GOL . . . C 2 -11.46 7.954 -42.773 1 20 ? HO3 GOL 502 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #