data_5ZJA # _model_server_result.job_id Z2pe5Du22p1G_TtTL_WRJw _model_server_result.datetime_utc '2024-10-18 16:22:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 5ZJA # _exptl.entry_id 5ZJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZJA _cell.length_a 150.294 _cell.length_b 182.641 _cell.length_c 51.121 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 95 n n PA O2A FAD sing 96 n n PA O5B FAD sing 97 n n PA O3P FAD sing 98 n n O2A HOA2 FAD sing 99 n n O5B C5B FAD sing 100 n n C5B C4B FAD sing 101 n n C5B H51A FAD sing 102 n n C5B H52A FAD sing 103 n n C4B O4B FAD sing 104 n n C4B C3B FAD sing 105 n n C4B H4B FAD sing 106 n n O4B C1B FAD sing 107 n n C3B O3B FAD sing 108 n n C3B C2B FAD sing 109 n n C3B H3B FAD sing 110 n n O3B HO3A FAD sing 111 n n C2B O2B FAD sing 112 n n C2B C1B FAD sing 113 n n C2B H2B FAD sing 114 n n O2B HO2A FAD sing 115 n n C1B N9A FAD sing 116 n n C1B H1B FAD sing 117 n n N9A C8A FAD sing 118 n y N9A C4A FAD sing 119 n y C8A N7A FAD doub 120 n y C8A H8A FAD sing 121 n n N7A C5A FAD sing 122 n y C5A C6A FAD sing 123 n y C5A C4A FAD doub 124 n y C6A N6A FAD sing 125 n n C6A N1A FAD doub 126 n y N6A H61A FAD sing 127 n n N6A H62A FAD sing 128 n n N1A C2A FAD sing 129 n y C2A N3A FAD doub 130 n y C2A H2A FAD sing 131 n n N3A C4A FAD sing 132 n y N1 C2 FAD sing 133 n n N1 C10 FAD doub 134 n n C2 O2 FAD doub 135 n n C2 N3 FAD sing 136 n n N3 C4 FAD sing 137 n n N3 HN3 FAD sing 138 n n C4 O4 FAD doub 139 n n C4 C4X FAD sing 140 n n C4X N5 FAD doub 141 n n C4X C10 FAD sing 142 n n N5 C5X FAD sing 143 n n C5X C6 FAD doub 144 n y C5X C9A FAD sing 145 n y C6 C7 FAD sing 146 n y C6 H6 FAD sing 147 n n C7 C7M FAD sing 148 n n C7 C8 FAD doub 149 n y C7M HM71 FAD sing 150 n n C7M HM72 FAD sing 151 n n C7M HM73 FAD sing 152 n n C8 C8M FAD sing 153 n n C8 C9 FAD sing 154 n y C8M HM81 FAD sing 155 n n C8M HM82 FAD sing 156 n n C8M HM83 FAD sing 157 n n C9 C9A FAD doub 158 n y C9 H9 FAD sing 159 n n C9A N10 FAD sing 160 n n N10 C10 FAD sing 161 n n N10 C1' FAD sing 162 n n C1' C2' FAD sing 163 n n C1' "H1'1" FAD sing 164 n n C1' "H1'2" FAD sing 165 n n C2' O2' FAD sing 166 n n C2' C3' FAD sing 167 n n C2' H2' FAD sing 168 n n O2' HO2' FAD sing 169 n n C3' O3' FAD sing 170 n n C3' C4' FAD sing 171 n n C3' H3' FAD sing 172 n n O3' HO3' FAD sing 173 n n C4' O4' FAD sing 174 n n C4' C5' FAD sing 175 n n C4' H4' FAD sing 176 n n O4' HO4' FAD sing 177 n n C5' O5' FAD sing 178 n n C5' "H5'1" FAD sing 179 n n C5' "H5'2" FAD sing 180 n n O5' P FAD sing 181 n n P O1P FAD doub 182 n n P O2P FAD sing 183 n n P O3P FAD sing 184 n n O2P HOP2 FAD sing 185 n n # _atom_sites.entry_id 5ZJA _atom_sites.fract_transf_matrix[1][1] 0.006654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 401 401 FAD FAD . F 3 9E9 A 1 402 411 9E9 458 . G 2 FAD B 1 401 401 FAD FAD . H 3 9E9 B 1 402 411 9E9 458 . I 2 FAD C 1 401 401 FAD FAD . J 3 9E9 C 1 402 411 9E9 458 . K 2 FAD D 1 401 401 FAD FAD . L 3 9E9 D 1 402 411 9E9 458 . M 4 HOH A 1 501 29 HOH HOH . M 4 HOH A 2 502 41 HOH HOH . M 4 HOH A 3 503 107 HOH HOH . M 4 HOH A 4 504 58 HOH HOH . M 4 HOH A 5 505 5 HOH HOH . M 4 HOH A 6 506 51 HOH HOH . M 4 HOH A 7 507 12 HOH HOH . M 4 HOH A 8 508 6 HOH HOH . M 4 HOH A 9 509 7 HOH HOH . M 4 HOH A 10 510 24 HOH HOH . M 4 HOH A 11 511 83 HOH HOH . M 4 HOH A 12 512 38 HOH HOH . M 4 HOH A 13 513 44 HOH HOH . M 4 HOH A 14 514 81 HOH HOH . M 4 HOH A 15 515 3 HOH HOH . M 4 HOH A 16 516 85 HOH HOH . M 4 HOH A 17 517 63 HOH HOH . M 4 HOH A 18 518 82 HOH HOH . M 4 HOH A 19 519 73 HOH HOH . M 4 HOH A 20 520 19 HOH HOH . M 4 HOH A 21 521 28 HOH HOH . M 4 HOH A 22 522 105 HOH HOH . M 4 HOH A 23 523 106 HOH HOH . M 4 HOH A 24 524 90 HOH HOH . N 4 HOH B 1 501 98 HOH HOH . N 4 HOH B 2 502 37 HOH HOH . N 4 HOH B 3 503 2 HOH HOH . N 4 HOH B 4 504 32 HOH HOH . N 4 HOH B 5 505 65 HOH HOH . N 4 HOH B 6 506 71 HOH HOH . N 4 HOH B 7 507 89 HOH HOH . N 4 HOH B 8 508 60 HOH HOH . N 4 HOH B 9 509 94 HOH HOH . N 4 HOH B 10 510 64 HOH HOH . N 4 HOH B 11 511 61 HOH HOH . N 4 HOH B 12 512 103 HOH HOH . N 4 HOH B 13 513 47 HOH HOH . N 4 HOH B 14 514 97 HOH HOH . N 4 HOH B 15 515 88 HOH HOH . N 4 HOH B 16 516 57 HOH HOH . N 4 HOH B 17 517 96 HOH HOH . N 4 HOH B 18 518 91 HOH HOH . O 4 HOH C 1 501 62 HOH HOH . O 4 HOH C 2 502 10 HOH HOH . O 4 HOH C 3 503 27 HOH HOH . O 4 HOH C 4 504 68 HOH HOH . O 4 HOH C 5 505 23 HOH HOH . O 4 HOH C 6 506 40 HOH HOH . O 4 HOH C 7 507 1 HOH HOH . O 4 HOH C 8 508 95 HOH HOH . O 4 HOH C 9 509 31 HOH HOH . O 4 HOH C 10 510 101 HOH HOH . O 4 HOH C 11 511 79 HOH HOH . O 4 HOH C 12 512 17 HOH HOH . O 4 HOH C 13 513 14 HOH HOH . O 4 HOH C 14 514 104 HOH HOH . O 4 HOH C 15 515 56 HOH HOH . O 4 HOH C 16 516 22 HOH HOH . O 4 HOH C 17 517 4 HOH HOH . O 4 HOH C 18 518 86 HOH HOH . O 4 HOH C 19 519 87 HOH HOH . O 4 HOH C 20 520 33 HOH HOH . O 4 HOH C 21 521 66 HOH HOH . O 4 HOH C 22 522 11 HOH HOH . O 4 HOH C 23 523 74 HOH HOH . O 4 HOH C 24 524 16 HOH HOH . O 4 HOH C 25 525 92 HOH HOH . O 4 HOH C 26 526 72 HOH HOH . O 4 HOH C 27 527 21 HOH HOH . O 4 HOH C 28 528 45 HOH HOH . O 4 HOH C 29 529 26 HOH HOH . O 4 HOH C 30 530 80 HOH HOH . O 4 HOH C 31 531 100 HOH HOH . O 4 HOH C 32 532 49 HOH HOH . O 4 HOH C 33 533 67 HOH HOH . O 4 HOH C 34 534 25 HOH HOH . O 4 HOH C 35 535 50 HOH HOH . O 4 HOH C 36 536 99 HOH HOH . P 4 HOH D 1 501 55 HOH HOH . P 4 HOH D 2 502 35 HOH HOH . P 4 HOH D 3 503 93 HOH HOH . P 4 HOH D 4 504 18 HOH HOH . P 4 HOH D 5 505 42 HOH HOH . P 4 HOH D 6 506 46 HOH HOH . P 4 HOH D 7 507 30 HOH HOH . P 4 HOH D 8 508 69 HOH HOH . P 4 HOH D 9 509 39 HOH HOH . P 4 HOH D 10 510 9 HOH HOH . P 4 HOH D 11 511 13 HOH HOH . P 4 HOH D 12 512 20 HOH HOH . P 4 HOH D 13 513 84 HOH HOH . P 4 HOH D 14 514 78 HOH HOH . P 4 HOH D 15 515 48 HOH HOH . P 4 HOH D 16 516 54 HOH HOH . P 4 HOH D 17 517 76 HOH HOH . P 4 HOH D 18 518 53 HOH HOH . P 4 HOH D 19 519 34 HOH HOH . P 4 HOH D 20 520 59 HOH HOH . P 4 HOH D 21 521 102 HOH HOH . P 4 HOH D 22 522 75 HOH HOH . P 4 HOH D 23 523 52 HOH HOH . P 4 HOH D 24 524 77 HOH HOH . P 4 HOH D 25 525 108 HOH HOH . P 4 HOH D 26 526 70 HOH HOH . P 4 HOH D 27 527 15 HOH HOH . P 4 HOH D 28 528 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . K 2 113.958 23.314 42.257 1 46.09 ? PA FAD 401 D 1 HETATM 2 O O1A FAD . . . K 2 114.358 24.613 42.863 1 47.93 -1 O1A FAD 401 D 1 HETATM 3 O O2A FAD . . . K 2 114.759 22.625 41.207 1 41.96 ? O2A FAD 401 D 1 HETATM 4 O O5B FAD . . . K 2 114.911 22.614 43.368 1 41.59 ? O5B FAD 401 D 1 HETATM 5 C C5B FAD . . . K 2 115.265 21.222 43.323 1 31.75 ? C5B FAD 401 D 1 HETATM 6 C C4B FAD . . . K 2 116.128 20.895 44.549 1 36.85 ? C4B FAD 401 D 1 HETATM 7 O O4B FAD . . . K 2 116.151 19.444 44.76 1 41.06 ? O4B FAD 401 D 1 HETATM 8 C C3B FAD . . . K 2 117.587 21.247 44.284 1 36.23 ? C3B FAD 401 D 1 HETATM 9 O O3B FAD . . . K 2 118.288 21.312 45.525 1 38.9 ? O3B FAD 401 D 1 HETATM 10 C C2B FAD . . . K 2 118.003 19.99 43.583 1 40.45 ? C2B FAD 401 D 1 HETATM 11 O O2B FAD . . . K 2 119.427 19.934 43.426 1 32.81 ? O2B FAD 401 D 1 HETATM 12 C C1B FAD . . . K 2 117.548 19.069 44.68 1 39.29 ? C1B FAD 401 D 1 HETATM 13 N N9A FAD . . . K 2 117.701 17.632 44.338 1 50.48 ? N9A FAD 401 D 1 HETATM 14 C C8A FAD . . . K 2 117.041 17.066 43.335 1 51.27 ? C8A FAD 401 D 1 HETATM 15 N N7A FAD . . . K 2 117.382 15.783 43.284 1 43.85 ? N7A FAD 401 D 1 HETATM 16 C C5A FAD . . . K 2 118.259 15.551 44.257 1 48.95 ? C5A FAD 401 D 1 HETATM 17 C C6A FAD . . . K 2 118.893 14.433 44.616 1 49.82 ? C6A FAD 401 D 1 HETATM 18 N N6A FAD . . . K 2 118.624 13.347 43.895 1 42.05 ? N6A FAD 401 D 1 HETATM 19 N N1A FAD . . . K 2 119.753 14.403 45.642 1 53.66 ? N1A FAD 401 D 1 HETATM 20 C C2A FAD . . . K 2 119.986 15.584 46.351 1 57.95 ? C2A FAD 401 D 1 HETATM 21 N N3A FAD . . . K 2 119.306 16.743 45.952 1 49.14 ? N3A FAD 401 D 1 HETATM 22 C C4A FAD . . . K 2 118.459 16.697 44.913 1 49.33 ? C4A FAD 401 D 1 HETATM 23 N N1 FAD . . . K 2 107.013 29.972 39.498 1 30.49 ? N1 FAD 401 D 1 HETATM 24 C C2 FAD . . . K 2 106.335 31.072 40.038 1 30.5 ? C2 FAD 401 D 1 HETATM 25 O O2 FAD . . . K 2 105.618 30.931 41.028 1 38.63 ? O2 FAD 401 D 1 HETATM 26 N N3 FAD . . . K 2 106.475 32.334 39.45 1 29.08 ? N3 FAD 401 D 1 HETATM 27 C C4 FAD . . . K 2 107.289 32.496 38.321 1 47.55 ? C4 FAD 401 D 1 HETATM 28 O O4 FAD . . . K 2 107.404 33.609 37.808 1 39.4 ? O4 FAD 401 D 1 HETATM 29 C C4X FAD . . . K 2 107.958 31.397 37.79 1 46.57 ? C4X FAD 401 D 1 HETATM 30 N N5 FAD . . . K 2 108.734 31.551 36.71 1 39.99 ? N5 FAD 401 D 1 HETATM 31 C C5X FAD . . . K 2 109.366 30.498 36.177 1 38.39 ? C5X FAD 401 D 1 HETATM 32 C C6 FAD . . . K 2 110.152 30.669 35.044 1 38.64 ? C6 FAD 401 D 1 HETATM 33 C C7 FAD . . . K 2 110.809 29.581 34.483 1 32.65 ? C7 FAD 401 D 1 HETATM 34 C C7M FAD . . . K 2 111.593 29.76 33.349 1 31.64 ? C7M FAD 401 D 1 HETATM 35 C C8 FAD . . . K 2 110.681 28.32 35.059 1 30.35 ? C8 FAD 401 D 1 HETATM 36 C C8M FAD . . . K 2 111.339 27.228 34.503 1 24.33 ? C8M FAD 401 D 1 HETATM 37 C C9 FAD . . . K 2 109.895 28.152 36.195 1 40.66 ? C9 FAD 401 D 1 HETATM 38 C C9A FAD . . . K 2 109.236 29.241 36.756 1 38.98 ? C9A FAD 401 D 1 HETATM 39 N N10 FAD . . . K 2 108.473 29.084 37.851 1 42.42 ? N10 FAD 401 D 1 HETATM 40 C C10 FAD . . . K 2 107.825 30.138 38.37 1 42.96 ? C10 FAD 401 D 1 HETATM 41 C C1' FAD . . . K 2 108.343 27.751 38.487 1 31.26 ? C1' FAD 401 D 1 HETATM 42 C C2' FAD . . . K 2 109.331 27.587 39.649 1 40.97 ? C2' FAD 401 D 1 HETATM 43 O O2' FAD . . . K 2 110.658 27.852 39.184 1 41.44 ? O2' FAD 401 D 1 HETATM 44 C C3' FAD . . . K 2 109.263 26.157 40.201 1 45.35 ? C3' FAD 401 D 1 HETATM 45 O O3' FAD . . . K 2 107.899 25.784 40.413 1 45.24 ? O3' FAD 401 D 1 HETATM 46 C C4' FAD . . . K 2 110.026 26.079 41.529 1 39.44 ? C4' FAD 401 D 1 HETATM 47 O O4' FAD . . . K 2 111.312 26.69 41.382 1 35.4 ? O4' FAD 401 D 1 HETATM 48 C C5' FAD . . . K 2 110.201 24.614 41.944 1 42.02 ? C5' FAD 401 D 1 HETATM 49 O O5' FAD . . . K 2 111.341 24.498 42.806 1 47.82 ? O5' FAD 401 D 1 HETATM 50 P P FAD . . . K 2 111.55 23.176 43.699 1 42.42 ? P FAD 401 D 1 HETATM 51 O O1P FAD . . . K 2 111.931 23.576 45.07 1 49.67 -1 O1P FAD 401 D 1 HETATM 52 O O2P FAD . . . K 2 110.388 22.288 43.491 1 54.22 ? O2P FAD 401 D 1 HETATM 53 O O3P FAD . . . K 2 112.821 22.451 43.025 1 35.08 ? O3P FAD 401 D 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #