data_5ZJN # _model_server_result.job_id aC5VOJMIjq_4rTOPNfq--w _model_server_result.datetime_utc '2025-01-05 11:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zjn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5ZJN # _exptl.entry_id 5ZJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.188 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-acetylmannosamine-6-phosphate _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZJN _cell.length_a 48.959 _cell.length_b 70.653 _cell.length_c 149.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C8 H16 N O9 P' _chem_comp.formula_weight 301.188 _chem_comp.id LRY _chem_comp.mon_nstd_flag . _chem_comp.name N-acetylmannosamine-6-phosphate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 N LRY sing 201 n n N C2 LRY sing 202 n n N HN LRY sing 203 n n O6 P LRY sing 204 n n OP3 P LRY doub 205 n n P OP2 LRY sing 206 n n P OP1 LRY sing 207 n n C1 O1 LRY doub 208 n n C1 C2 LRY sing 209 n n C1 H1 LRY sing 210 n n C2 C3 LRY sing 211 n n C2 H2 LRY sing 212 n n C3 O3 LRY sing 213 n n C3 C4 LRY sing 214 n n C3 H3 LRY sing 215 n n O3 HO3 LRY sing 216 n n C5 C4 LRY sing 217 n n C4 O4 LRY sing 218 n n C4 H4 LRY sing 219 n n O4 HO4 LRY sing 220 n n O5 C5 LRY sing 221 n n C5 C6 LRY sing 222 n n C5 H5 LRY sing 223 n n O5 HO5 LRY sing 224 n n C6 O6 LRY sing 225 n n C6 H6 LRY sing 226 n n C6 H6A LRY sing 227 n n O7 C7 LRY doub 228 n n C8 C7 LRY sing 229 n n C8 H8 LRY sing 230 n n C8 H8A LRY sing 231 n n C8 H8B LRY sing 232 n n OP1 HOP1 LRY sing 233 n n OP2 HOP2 LRY sing 234 n n # _atom_sites.entry_id 5ZJN _atom_sites.fract_transf_matrix[1][1] 0.020425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LRY A 1 301 301 LRY LRY . D 3 PEG A 1 302 1 PEG PEG . E 3 PEG A 1 303 2 PEG PEG . F 4 EDO A 1 304 1 EDO EDO . G 5 PGE A 1 305 1 PGE PGE . H 2 LRY B 1 301 301 LRY LRY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LRY . . . C 2 -26.342 -24.092 13.413 1 50.86 ? N LRY 301 A 1 HETATM 2 P P LRY . . . C 2 -22.692 -21.006 17.11 1 37.58 ? P LRY 301 A 1 HETATM 3 C C1 LRY . . . C 2 -24.691 -24.502 11.572 1 44.06 ? C1 LRY 301 A 1 HETATM 4 O O1 LRY . . . C 2 -23.72 -24.144 10.983 1 44.52 ? O1 LRY 301 A 1 HETATM 5 C C2 LRY . . . C 2 -25.665 -23.503 12.26 1 43.29 ? C2 LRY 301 A 1 HETATM 6 C C3 LRY . . . C 2 -24.906 -22.204 12.607 1 45.86 ? C3 LRY 301 A 1 HETATM 7 O O3 LRY . . . C 2 -25.803 -21.105 12.485 1 44.77 ? O3 LRY 301 A 1 HETATM 8 C C4 LRY . . . C 2 -24.235 -22.142 13.982 1 46.55 ? C4 LRY 301 A 1 HETATM 9 O O4 LRY . . . C 2 -23.831 -20.803 14.244 1 43.22 ? O4 LRY 301 A 1 HETATM 10 C C5 LRY . . . C 2 -23.006 -23.042 14.102 1 46.25 ? C5 LRY 301 A 1 HETATM 11 O O5 LRY . . . C 2 -23.428 -24.359 14.467 1 40.98 ? O5 LRY 301 A 1 HETATM 12 C C6 LRY . . . C 2 -21.99 -22.499 15.089 1 43.98 ? C6 LRY 301 A 1 HETATM 13 O O6 LRY . . . C 2 -22.577 -22.428 16.405 1 38.82 ? O6 LRY 301 A 1 HETATM 14 C C7 LRY . . . C 2 -27.546 -24.695 13.345 1 47.93 ? C7 LRY 301 A 1 HETATM 15 O O7 LRY . . . C 2 -28.146 -24.843 12.284 1 45.56 ? O7 LRY 301 A 1 HETATM 16 C C8 LRY . . . C 2 -28.119 -25.164 14.647 1 45.24 ? C8 LRY 301 A 1 HETATM 17 O OP1 LRY . . . C 2 -23.443 -21.142 18.423 1 37.42 ? OP1 LRY 301 A 1 HETATM 18 O OP2 LRY . . . C 2 -21.259 -20.642 17.459 1 38.93 ? OP2 LRY 301 A 1 HETATM 19 O OP3 LRY . . . C 2 -23.352 -20.063 16.191 1 37.01 ? OP3 LRY 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 19 #