data_5ZJP # _model_server_result.job_id 9nFAbuRvPNct_feJZtJ9fg _model_server_result.datetime_utc '2025-01-05 11:51:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5ZJP # _exptl.entry_id 5ZJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 299.172 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-acetyl-D-glucosamine-6-phosphate _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZJP _cell.length_a 48.959 _cell.length_b 70.653 _cell.length_c 149.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H14 N O9 P -2' _chem_comp.formula_weight 299.172 _chem_comp.id RFW _chem_comp.mon_nstd_flag . _chem_comp.name N-acetyl-D-glucosamine-6-phosphate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O6 RFW sing 304 n n P O1P RFW sing 305 n n P O2P RFW sing 306 n n P O3P RFW doub 307 n n C1 O1 RFW doub 308 n n C1 C2 RFW sing 309 n n C2 N2 RFW sing 310 n n C2 C3 RFW sing 311 n n N2 C7 RFW sing 312 n n C3 O3 RFW sing 313 n n C3 C4 RFW sing 314 n n C4 O4 RFW sing 315 n n C4 C5 RFW sing 316 n n C5 O5 RFW sing 317 n n C5 C6 RFW sing 318 n n C6 O6 RFW sing 319 n n C7 O7 RFW doub 320 n n C7 C8 RFW sing 321 n n C1 H1 RFW sing 322 n n C2 H2 RFW sing 323 n n N2 HN2 RFW sing 324 n n C3 H3 RFW sing 325 n n O3 HO3 RFW sing 326 n n C4 H4 RFW sing 327 n n O4 HO4 RFW sing 328 n n C5 H5 RFW sing 329 n n O5 HO5 RFW sing 330 n n C6 H6 RFW sing 331 n n C6 H6A RFW sing 332 n n C8 H8 RFW sing 333 n n C8 H8A RFW sing 334 n n C8 H8B RFW sing 335 n n # _atom_sites.entry_id 5ZJP _atom_sites.fract_transf_matrix[1][1] 0.020425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RFW A 1 301 1223 RFW RFW . D 3 PGE A 1 302 1 PGE 15P . E 2 RFW B 1 301 1222 RFW RFW . F 4 PEG B 1 302 1 PEG PEG . G 4 PEG B 1 303 2 PEG PEG . H 5 EDO B 1 304 1 EDO EDO . I 6 HOH B 1 401 3 HOH HOH . I 6 HOH B 2 402 1 HOH HOH . I 6 HOH B 3 403 2 HOH HOH . I 6 HOH B 4 404 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P RFW . . . E 2 -22.664 -20.978 17.178 1 46.28 ? P RFW 301 B 1 HETATM 2 C C1 RFW . . . E 2 -25.515 -24.066 11.015 1 48.83 ? C1 RFW 301 B 1 HETATM 3 O O1 RFW . . . E 2 -24.576 -24.087 10.292 1 51.49 ? O1 RFW 301 B 1 HETATM 4 C C2 RFW . . . E 2 -25.308 -23.818 12.511 1 45.8 ? C2 RFW 301 B 1 HETATM 5 N N2 RFW . . . E 2 -26.354 -24.343 13.395 1 47.19 ? N2 RFW 301 B 1 HETATM 6 C C3 RFW . . . E 2 -25.135 -22.318 12.756 1 52.28 ? C3 RFW 301 B 1 HETATM 7 O O3 RFW . . . E 2 -26.393 -21.709 12.841 1 58.25 ? O3 RFW 301 B 1 HETATM 8 C C4 RFW . . . E 2 -24.375 -22.082 14.061 1 48.9 ? C4 RFW 301 B 1 HETATM 9 O O4 RFW . . . E 2 -24.042 -20.723 14.148 1 46.26 ? O4 RFW 301 B 1 HETATM 10 C C5 RFW . . . E 2 -23.094 -22.911 14.128 1 46.17 ? C5 RFW 301 B 1 HETATM 11 O O5 RFW . . . E 2 -23.324 -24.104 14.827 1 49.39 ? O5 RFW 301 B 1 HETATM 12 C C6 RFW . . . E 2 -22.046 -22.112 14.894 1 44.11 ? C6 RFW 301 B 1 HETATM 13 O O6 RFW . . . E 2 -22.292 -22.292 16.258 1 38.43 ? O6 RFW 301 B 1 HETATM 14 C C7 RFW . . . E 2 -27.677 -24.846 13.035 1 48.07 ? C7 RFW 301 B 1 HETATM 15 O O7 RFW . . . E 2 -28.071 -24.884 11.92 1 54.49 ? O7 RFW 301 B 1 HETATM 16 C C8 RFW . . . E 2 -28.6 -25.345 14.145 1 42.61 ? C8 RFW 301 B 1 HETATM 17 O O1P RFW . . . E 2 -21.396 -20.255 17.565 1 49.2 ? O1P RFW 301 B 1 HETATM 18 O O2P RFW . . . E 2 -23.385 -21.435 18.423 1 43.58 ? O2P RFW 301 B 1 HETATM 19 O O3P RFW . . . E 2 -23.558 -20.043 16.398 1 44.61 ? O3P RFW 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #