data_5ZJP # _model_server_result.job_id '_bDHE0B6wvbHCmlxArzauw' _model_server_result.datetime_utc '2025-01-05 11:35:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5ZJP # _exptl.entry_id 5ZJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZJP _cell.length_a 48.959 _cell.length_b 70.653 _cell.length_c 149.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 241 n n C1 C2 PGE sing 242 n n C1 H1 PGE sing 243 n n C1 H12 PGE sing 244 n n O1 HO1 PGE sing 245 n n C2 O2 PGE sing 246 n n C2 H2 PGE sing 247 n n C2 H22 PGE sing 248 n n O2 C3 PGE sing 249 n n C3 C4 PGE sing 250 n n C3 H3 PGE sing 251 n n C3 H32 PGE sing 252 n n C4 O3 PGE sing 253 n n C4 H4 PGE sing 254 n n C4 H42 PGE sing 255 n n O4 C6 PGE sing 256 n n O4 HO4 PGE sing 257 n n C6 C5 PGE sing 258 n n C6 H6 PGE sing 259 n n C6 H62 PGE sing 260 n n C5 O3 PGE sing 261 n n C5 H5 PGE sing 262 n n C5 H52 PGE sing 263 n n # _atom_sites.entry_id 5ZJP _atom_sites.fract_transf_matrix[1][1] 0.020425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RFW A 1 301 1223 RFW RFW . D 3 PGE A 1 302 1 PGE 15P . E 2 RFW B 1 301 1222 RFW RFW . F 4 PEG B 1 302 1 PEG PEG . G 4 PEG B 1 303 2 PEG PEG . H 5 EDO B 1 304 1 EDO EDO . I 6 HOH B 1 401 3 HOH HOH . I 6 HOH B 2 402 1 HOH HOH . I 6 HOH B 3 403 2 HOH HOH . I 6 HOH B 4 404 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 3 -11.883 -13.899 28.14 1 55.67 ? C1 PGE 302 A 1 HETATM 2 O O1 PGE . . . D 3 -10.659 -14.517 28.431 1 52.27 ? O1 PGE 302 A 1 HETATM 3 C C2 PGE . . . D 3 -11.809 -13.333 26.724 1 55.01 ? C2 PGE 302 A 1 HETATM 4 O O2 PGE . . . D 3 -12.919 -12.506 26.519 1 58.66 ? O2 PGE 302 A 1 HETATM 5 C C3 PGE . . . D 3 -14.076 -13.177 26.107 1 52.75 ? C3 PGE 302 A 1 HETATM 6 C C4 PGE . . . D 3 -14.303 -12.86 24.63 1 53.93 ? C4 PGE 302 A 1 HETATM 7 O O4 PGE . . . D 3 -18.429 -12.326 23.234 1 47.62 ? O4 PGE 302 A 1 HETATM 8 C C6 PGE . . . D 3 -17.255 -12.717 22.578 1 47.21 ? C6 PGE 302 A 1 HETATM 9 C C5 PGE . . . D 3 -16.065 -12.09 23.303 1 51.97 ? C5 PGE 302 A 1 HETATM 10 O O3 PGE . . . D 3 -15.672 -12.936 24.346 1 59.15 ? O3 PGE 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #