data_5ZJW # _model_server_result.job_id 3Au-hE9aOUHW0EaGZupQpA _model_server_result.datetime_utc '2024-10-19 16:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zjw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 5ZJW # _exptl.entry_id 5ZJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZJW _cell.length_a 43.117 _cell.length_b 63.399 _cell.length_c 100.432 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 175 A LYS 473 1_555 A N SEP 176 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C SEP 176 A SEP 474 1_555 A N LEU 177 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 147 n n C1 C2 EDO sing 148 n n C1 H11 EDO sing 149 n n C1 H12 EDO sing 150 n n O1 HO1 EDO sing 151 n n C2 O2 EDO sing 152 n n C2 H21 EDO sing 153 n n C2 H22 EDO sing 154 n n O2 HO2 EDO sing 155 n n # _atom_sites.entry_id 5ZJW _atom_sites.fract_transf_matrix[1][1] 0.023193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9EO A 1 601 1 9EO DRG . C 3 EDO A 1 602 1 EDO EDO . D 3 EDO A 1 603 2 EDO EDO . E 3 EDO A 1 604 3 EDO EDO . F 3 EDO A 1 605 4 EDO EDO . G 3 EDO A 1 606 5 EDO EDO . H 3 EDO A 1 607 6 EDO EDO . I 3 EDO A 1 608 7 EDO EDO . J 3 EDO A 1 609 8 EDO EDO . K 4 TRS A 1 610 9 TRS TRS . L 5 BCT A 1 611 10 BCT BCT . M 6 HOH A 1 701 73 HOH HOH . M 6 HOH A 2 702 154 HOH HOH . M 6 HOH A 3 703 59 HOH HOH . M 6 HOH A 4 704 235 HOH HOH . M 6 HOH A 5 705 227 HOH HOH . M 6 HOH A 6 706 157 HOH HOH . M 6 HOH A 7 707 100 HOH HOH . M 6 HOH A 8 708 122 HOH HOH . M 6 HOH A 9 709 224 HOH HOH . M 6 HOH A 10 710 147 HOH HOH . M 6 HOH A 11 711 167 HOH HOH . M 6 HOH A 12 712 126 HOH HOH . M 6 HOH A 13 713 63 HOH HOH . M 6 HOH A 14 714 98 HOH HOH . M 6 HOH A 15 715 248 HOH HOH . M 6 HOH A 16 716 14 HOH HOH . M 6 HOH A 17 717 124 HOH HOH . M 6 HOH A 18 718 55 HOH HOH . M 6 HOH A 19 719 76 HOH HOH . M 6 HOH A 20 720 78 HOH HOH . M 6 HOH A 21 721 45 HOH HOH . M 6 HOH A 22 722 27 HOH HOH . M 6 HOH A 23 723 57 HOH HOH . M 6 HOH A 24 724 74 HOH HOH . M 6 HOH A 25 725 81 HOH HOH . M 6 HOH A 26 726 246 HOH HOH . M 6 HOH A 27 727 153 HOH HOH . M 6 HOH A 28 728 39 HOH HOH . M 6 HOH A 29 729 24 HOH HOH . M 6 HOH A 30 730 65 HOH HOH . M 6 HOH A 31 731 33 HOH HOH . M 6 HOH A 32 732 216 HOH HOH . M 6 HOH A 33 733 118 HOH HOH . M 6 HOH A 34 734 21 HOH HOH . M 6 HOH A 35 735 89 HOH HOH . M 6 HOH A 36 736 186 HOH HOH . M 6 HOH A 37 737 156 HOH HOH . M 6 HOH A 38 738 111 HOH HOH . M 6 HOH A 39 739 13 HOH HOH . M 6 HOH A 40 740 151 HOH HOH . M 6 HOH A 41 741 265 HOH HOH . M 6 HOH A 42 742 174 HOH HOH . M 6 HOH A 43 743 15 HOH HOH . M 6 HOH A 44 744 252 HOH HOH . M 6 HOH A 45 745 38 HOH HOH . M 6 HOH A 46 746 225 HOH HOH . M 6 HOH A 47 747 243 HOH HOH . M 6 HOH A 48 748 261 HOH HOH . M 6 HOH A 49 749 193 HOH HOH . M 6 HOH A 50 750 23 HOH HOH . M 6 HOH A 51 751 194 HOH HOH . M 6 HOH A 52 752 155 HOH HOH . M 6 HOH A 53 753 53 HOH HOH . M 6 HOH A 54 754 90 HOH HOH . M 6 HOH A 55 755 109 HOH HOH . M 6 HOH A 56 756 133 HOH HOH . M 6 HOH A 57 757 12 HOH HOH . M 6 HOH A 58 758 22 HOH HOH . M 6 HOH A 59 759 37 HOH HOH . M 6 HOH A 60 760 183 HOH HOH . M 6 HOH A 61 761 158 HOH HOH . M 6 HOH A 62 762 88 HOH HOH . M 6 HOH A 63 763 168 HOH HOH . M 6 HOH A 64 764 107 HOH HOH . M 6 HOH A 65 765 201 HOH HOH . M 6 HOH A 66 766 271 HOH HOH . M 6 HOH A 67 767 86 HOH HOH . M 6 HOH A 68 768 233 HOH HOH . M 6 HOH A 69 769 127 HOH HOH . M 6 HOH A 70 770 207 HOH HOH . M 6 HOH A 71 771 19 HOH HOH . M 6 HOH A 72 772 46 HOH HOH . M 6 HOH A 73 773 8 HOH HOH . M 6 HOH A 74 774 79 HOH HOH . M 6 HOH A 75 775 115 HOH HOH . M 6 HOH A 76 776 116 HOH HOH . M 6 HOH A 77 777 103 HOH HOH . M 6 HOH A 78 778 182 HOH HOH . M 6 HOH A 79 779 35 HOH HOH . M 6 HOH A 80 780 163 HOH HOH . M 6 HOH A 81 781 134 HOH HOH . M 6 HOH A 82 782 11 HOH HOH . M 6 HOH A 83 783 70 HOH HOH . M 6 HOH A 84 784 77 HOH HOH . M 6 HOH A 85 785 6 HOH HOH . M 6 HOH A 86 786 213 HOH HOH . M 6 HOH A 87 787 97 HOH HOH . M 6 HOH A 88 788 218 HOH HOH . M 6 HOH A 89 789 197 HOH HOH . M 6 HOH A 90 790 42 HOH HOH . M 6 HOH A 91 791 47 HOH HOH . M 6 HOH A 92 792 208 HOH HOH . M 6 HOH A 93 793 135 HOH HOH . M 6 HOH A 94 794 50 HOH HOH . M 6 HOH A 95 795 3 HOH HOH . M 6 HOH A 96 796 17 HOH HOH . M 6 HOH A 97 797 18 HOH HOH . M 6 HOH A 98 798 10 HOH HOH . M 6 HOH A 99 799 239 HOH HOH . M 6 HOH A 100 800 275 HOH HOH . M 6 HOH A 101 801 2 HOH HOH . M 6 HOH A 102 802 58 HOH HOH . M 6 HOH A 103 803 198 HOH HOH . M 6 HOH A 104 804 75 HOH HOH . M 6 HOH A 105 805 268 HOH HOH . M 6 HOH A 106 806 192 HOH HOH . M 6 HOH A 107 807 5 HOH HOH . M 6 HOH A 108 808 209 HOH HOH . M 6 HOH A 109 809 91 HOH HOH . M 6 HOH A 110 810 260 HOH HOH . M 6 HOH A 111 811 69 HOH HOH . M 6 HOH A 112 812 281 HOH HOH . M 6 HOH A 113 813 142 HOH HOH . M 6 HOH A 114 814 7 HOH HOH . M 6 HOH A 115 815 169 HOH HOH . M 6 HOH A 116 816 130 HOH HOH . M 6 HOH A 117 817 263 HOH HOH . M 6 HOH A 118 818 273 HOH HOH . M 6 HOH A 119 819 87 HOH HOH . M 6 HOH A 120 820 264 HOH HOH . M 6 HOH A 121 821 82 HOH HOH . M 6 HOH A 122 822 92 HOH HOH . M 6 HOH A 123 823 52 HOH HOH . M 6 HOH A 124 824 240 HOH HOH . M 6 HOH A 125 825 85 HOH HOH . M 6 HOH A 126 826 40 HOH HOH . M 6 HOH A 127 827 152 HOH HOH . M 6 HOH A 128 828 226 HOH HOH . M 6 HOH A 129 829 34 HOH HOH . M 6 HOH A 130 830 141 HOH HOH . M 6 HOH A 131 831 62 HOH HOH . M 6 HOH A 132 832 202 HOH HOH . M 6 HOH A 133 833 171 HOH HOH . M 6 HOH A 134 834 262 HOH HOH . M 6 HOH A 135 835 159 HOH HOH . M 6 HOH A 136 836 29 HOH HOH . M 6 HOH A 137 837 145 HOH HOH . M 6 HOH A 138 838 30 HOH HOH . M 6 HOH A 139 839 113 HOH HOH . M 6 HOH A 140 840 247 HOH HOH . M 6 HOH A 141 841 20 HOH HOH . M 6 HOH A 142 842 94 HOH HOH . M 6 HOH A 143 843 221 HOH HOH . M 6 HOH A 144 844 215 HOH HOH . M 6 HOH A 145 845 253 HOH HOH . M 6 HOH A 146 846 93 HOH HOH . M 6 HOH A 147 847 61 HOH HOH . M 6 HOH A 148 848 276 HOH HOH . M 6 HOH A 149 849 279 HOH HOH . M 6 HOH A 150 850 56 HOH HOH . M 6 HOH A 151 851 278 HOH HOH . M 6 HOH A 152 852 66 HOH HOH . M 6 HOH A 153 853 112 HOH HOH . M 6 HOH A 154 854 72 HOH HOH . M 6 HOH A 155 855 1 HOH HOH . M 6 HOH A 156 856 80 HOH HOH . M 6 HOH A 157 857 269 HOH HOH . M 6 HOH A 158 858 214 HOH HOH . M 6 HOH A 159 859 184 HOH HOH . M 6 HOH A 160 860 191 HOH HOH . M 6 HOH A 161 861 71 HOH HOH . M 6 HOH A 162 862 144 HOH HOH . M 6 HOH A 163 863 31 HOH HOH . M 6 HOH A 164 864 60 HOH HOH . M 6 HOH A 165 865 43 HOH HOH . M 6 HOH A 166 866 49 HOH HOH . M 6 HOH A 167 867 25 HOH HOH . M 6 HOH A 168 868 101 HOH HOH . M 6 HOH A 169 869 222 HOH HOH . M 6 HOH A 170 870 148 HOH HOH . M 6 HOH A 171 871 176 HOH HOH . M 6 HOH A 172 872 241 HOH HOH . M 6 HOH A 173 873 180 HOH HOH . M 6 HOH A 174 874 212 HOH HOH . M 6 HOH A 175 875 120 HOH HOH . M 6 HOH A 176 876 32 HOH HOH . M 6 HOH A 177 877 259 HOH HOH . M 6 HOH A 178 878 110 HOH HOH . M 6 HOH A 179 879 137 HOH HOH . M 6 HOH A 180 880 104 HOH HOH . M 6 HOH A 181 881 139 HOH HOH . M 6 HOH A 182 882 44 HOH HOH . M 6 HOH A 183 883 132 HOH HOH . M 6 HOH A 184 884 131 HOH HOH . M 6 HOH A 185 885 4 HOH HOH . M 6 HOH A 186 886 95 HOH HOH . M 6 HOH A 187 887 41 HOH HOH . M 6 HOH A 188 888 250 HOH HOH . M 6 HOH A 189 889 179 HOH HOH . M 6 HOH A 190 890 108 HOH HOH . M 6 HOH A 191 891 189 HOH HOH . M 6 HOH A 192 892 255 HOH HOH . M 6 HOH A 193 893 205 HOH HOH . M 6 HOH A 194 894 9 HOH HOH . M 6 HOH A 195 895 211 HOH HOH . M 6 HOH A 196 896 54 HOH HOH . M 6 HOH A 197 897 105 HOH HOH . M 6 HOH A 198 898 84 HOH HOH . M 6 HOH A 199 899 195 HOH HOH . M 6 HOH A 200 900 172 HOH HOH . M 6 HOH A 201 901 114 HOH HOH . M 6 HOH A 202 902 138 HOH HOH . M 6 HOH A 203 903 26 HOH HOH . M 6 HOH A 204 904 16 HOH HOH . M 6 HOH A 205 905 64 HOH HOH . M 6 HOH A 206 906 51 HOH HOH . M 6 HOH A 207 907 270 HOH HOH . M 6 HOH A 208 908 36 HOH HOH . M 6 HOH A 209 909 244 HOH HOH . M 6 HOH A 210 910 150 HOH HOH . M 6 HOH A 211 911 219 HOH HOH . M 6 HOH A 212 912 203 HOH HOH . M 6 HOH A 213 913 165 HOH HOH . M 6 HOH A 214 914 249 HOH HOH . M 6 HOH A 215 915 231 HOH HOH . M 6 HOH A 216 916 117 HOH HOH . M 6 HOH A 217 917 199 HOH HOH . M 6 HOH A 218 918 283 HOH HOH . M 6 HOH A 219 919 190 HOH HOH . M 6 HOH A 220 920 185 HOH HOH . M 6 HOH A 221 921 196 HOH HOH . M 6 HOH A 222 922 230 HOH HOH . M 6 HOH A 223 923 220 HOH HOH . M 6 HOH A 224 924 206 HOH HOH . M 6 HOH A 225 925 99 HOH HOH . M 6 HOH A 226 926 272 HOH HOH . M 6 HOH A 227 927 274 HOH HOH . M 6 HOH A 228 928 170 HOH HOH . M 6 HOH A 229 929 140 HOH HOH . M 6 HOH A 230 930 267 HOH HOH . M 6 HOH A 231 931 204 HOH HOH . M 6 HOH A 232 932 217 HOH HOH . M 6 HOH A 233 933 266 HOH HOH . M 6 HOH A 234 934 164 HOH HOH . M 6 HOH A 235 935 136 HOH HOH . M 6 HOH A 236 936 48 HOH HOH . M 6 HOH A 237 937 254 HOH HOH . M 6 HOH A 238 938 178 HOH HOH . M 6 HOH A 239 939 236 HOH HOH . M 6 HOH A 240 940 96 HOH HOH . M 6 HOH A 241 941 28 HOH HOH . M 6 HOH A 242 942 282 HOH HOH . M 6 HOH A 243 943 187 HOH HOH . M 6 HOH A 244 944 67 HOH HOH . M 6 HOH A 245 945 173 HOH HOH . M 6 HOH A 246 946 177 HOH HOH . M 6 HOH A 247 947 128 HOH HOH . M 6 HOH A 248 948 106 HOH HOH . M 6 HOH A 249 949 234 HOH HOH . M 6 HOH A 250 950 256 HOH HOH . M 6 HOH A 251 951 161 HOH HOH . M 6 HOH A 252 952 242 HOH HOH . M 6 HOH A 253 953 237 HOH HOH . M 6 HOH A 254 954 245 HOH HOH . M 6 HOH A 255 955 83 HOH HOH . M 6 HOH A 256 956 143 HOH HOH . M 6 HOH A 257 957 166 HOH HOH . M 6 HOH A 258 958 129 HOH HOH . M 6 HOH A 259 959 119 HOH HOH . M 6 HOH A 260 960 68 HOH HOH . M 6 HOH A 261 961 210 HOH HOH . M 6 HOH A 262 962 238 HOH HOH . M 6 HOH A 263 963 223 HOH HOH . M 6 HOH A 264 964 188 HOH HOH . M 6 HOH A 265 965 102 HOH HOH . M 6 HOH A 266 966 258 HOH HOH . M 6 HOH A 267 967 257 HOH HOH . M 6 HOH A 268 968 160 HOH HOH . M 6 HOH A 269 969 146 HOH HOH . M 6 HOH A 270 970 280 HOH HOH . M 6 HOH A 271 971 149 HOH HOH . M 6 HOH A 272 972 251 HOH HOH . M 6 HOH A 273 973 121 HOH HOH . M 6 HOH A 274 974 229 HOH HOH . M 6 HOH A 275 975 162 HOH HOH . M 6 HOH A 276 976 175 HOH HOH . M 6 HOH A 277 977 200 HOH HOH . M 6 HOH A 278 978 232 HOH HOH . M 6 HOH A 279 979 123 HOH HOH . M 6 HOH A 280 980 277 HOH HOH . M 6 HOH A 281 981 125 HOH HOH . M 6 HOH A 282 982 228 HOH HOH . M 6 HOH A 283 983 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -2.846 -2.702 11.512 1 30.73 ? C1 EDO 604 A 1 HETATM 2 O O1 EDO . . . E 3 -3.92 -3.587 11.173 1 36.98 ? O1 EDO 604 A 1 HETATM 3 C C2 EDO . . . E 3 -3.14 -1.303 10.987 1 33.33 ? C2 EDO 604 A 1 HETATM 4 O O2 EDO . . . E 3 -3.778 -1.377 9.696 1 26.94 ? O2 EDO 604 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #