data_5ZJZ
#
_model_server_result.job_id            0lBA3-AP4t6yObHMibs4oQ 
_model_server_result.datetime_utc      '2025-03-03 01:32:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zjz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5ZJZ 
#
_exptl.entry_id    5ZJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.223 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          122.74 
_cell.angle_gamma         90 
_cell.entry_id            5ZJZ 
_cell.length_a            91.27 
_cell.length_b            38.3 
_cell.length_c            78.93 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 B ACE 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 B C ARG 7 B ARG 7 1_555 B N MK8 8 B MK8 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale3 B C MK8 8 B MK8 8 1_555 B N GLN 9 B GLN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? 
covale ? covale4 B C LEU 11 B LEU 11 1_555 B N MK8 12 B MK8 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale5 B C MK8 12 B MK8 12 1_555 B N PHE 13 B PHE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 ? 
covale ? covale6 B C TRP 14 B TRP 14 1_555 B N NH2 15 B NH2 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
#
_chem_comp.formula           'C11 H20 N5 O14 P3' 
_chem_comp.formula_weight    539.223 
_chem_comp.id                MGT 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G MGT doub 243 n n 
PG O2G MGT sing 244 n n 
PG O3G MGT sing 245 n n 
PG O3B MGT sing 246 n n 
O2G HOG2 MGT sing 247 n n 
O3G HOG3 MGT sing 248 n n 
O3B PB MGT sing 249 n n 
PB O1B MGT doub 250 n n 
PB O2B MGT sing 251 n n 
PB O3A MGT sing 252 n n 
O2B HOB2 MGT sing 253 n n 
O3A PA MGT sing 254 n n 
PA O1A MGT doub 255 n n 
PA O2A MGT sing 256 n n 
PA O5' MGT sing 257 n n 
O2A HOA2 MGT sing 258 n n 
O5' C5' MGT sing 259 n n 
C5' C4' MGT sing 260 n n 
C5' "H5'1" MGT sing 261 n n 
C5' "H5'2" MGT sing 262 n n 
C4' O4' MGT sing 263 n n 
C4' C3' MGT sing 264 n n 
C4' H4' MGT sing 265 n n 
O4' C1' MGT sing 266 n n 
C3' O3' MGT sing 267 n n 
C3' C2' MGT sing 268 n n 
C3' H3' MGT sing 269 n n 
O3' HO3' MGT sing 270 n n 
C2' O2' MGT sing 271 n n 
C2' C1' MGT sing 272 n n 
C2' H2' MGT sing 273 n n 
O2' HO2' MGT sing 274 n n 
C1' N9 MGT sing 275 n n 
C1' H1' MGT sing 276 n n 
N9 C8 MGT sing 277 n n 
N9 C4 MGT sing 278 n n 
C8 N7 MGT sing 279 n n 
C8 H81 MGT sing 280 n n 
C8 H82 MGT sing 281 n n 
N7 CM7 MGT sing 282 n n 
N7 C5 MGT sing 283 n n 
CM7 HM71 MGT sing 284 n n 
CM7 HM72 MGT sing 285 n n 
CM7 HM73 MGT sing 286 n n 
C5 C6 MGT sing 287 n n 
C5 C4 MGT doub 288 n n 
C6 O6 MGT doub 289 n n 
C6 N1 MGT sing 290 n n 
N1 C2 MGT sing 291 n n 
N1 HN1 MGT sing 292 n n 
C2 N2 MGT sing 293 n n 
C2 N3 MGT doub 294 n n 
N2 HN21 MGT sing 295 n n 
N2 HN22 MGT sing 296 n n 
N3 C4 MGT sing 297 n n 
#
_atom_sites.entry_id                     5ZJZ 
_atom_sites.fract_transf_matrix[1][1]    0.010957 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007045 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015062 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MGT A 1 301 1 MGT MGT . 
D 4 HOH A 1 401 79 HOH HOH . 
D 4 HOH A 2 402 16 HOH HOH . 
D 4 HOH A 3 403 70 HOH HOH . 
D 4 HOH A 4 404 94 HOH HOH . 
D 4 HOH A 5 405 83 HOH HOH . 
D 4 HOH A 6 406 31 HOH HOH . 
D 4 HOH A 7 407 73 HOH HOH . 
D 4 HOH A 8 408 44 HOH HOH . 
D 4 HOH A 9 409 38 HOH HOH . 
D 4 HOH A 10 410 45 HOH HOH . 
D 4 HOH A 11 411 58 HOH HOH . 
D 4 HOH A 12 412 8 HOH HOH . 
D 4 HOH A 13 413 22 HOH HOH . 
D 4 HOH A 14 414 46 HOH HOH . 
D 4 HOH A 15 415 23 HOH HOH . 
D 4 HOH A 16 416 50 HOH HOH . 
D 4 HOH A 17 417 55 HOH HOH . 
D 4 HOH A 18 418 19 HOH HOH . 
D 4 HOH A 19 419 91 HOH HOH . 
D 4 HOH A 20 420 33 HOH HOH . 
D 4 HOH A 21 421 17 HOH HOH . 
D 4 HOH A 22 422 21 HOH HOH . 
D 4 HOH A 23 423 75 HOH HOH . 
D 4 HOH A 24 424 4 HOH HOH . 
D 4 HOH A 25 425 5 HOH HOH . 
D 4 HOH A 26 426 98 HOH HOH . 
D 4 HOH A 27 427 77 HOH HOH . 
D 4 HOH A 28 428 49 HOH HOH . 
D 4 HOH A 29 429 1 HOH HOH . 
D 4 HOH A 30 430 59 HOH HOH . 
D 4 HOH A 31 431 30 HOH HOH . 
D 4 HOH A 32 432 9 HOH HOH . 
D 4 HOH A 33 433 27 HOH HOH . 
D 4 HOH A 34 434 15 HOH HOH . 
D 4 HOH A 35 435 51 HOH HOH . 
D 4 HOH A 36 436 57 HOH HOH . 
D 4 HOH A 37 437 3 HOH HOH . 
D 4 HOH A 38 438 14 HOH HOH . 
D 4 HOH A 39 439 54 HOH HOH . 
D 4 HOH A 40 440 2 HOH HOH . 
D 4 HOH A 41 441 24 HOH HOH . 
D 4 HOH A 42 442 89 HOH HOH . 
D 4 HOH A 43 443 10 HOH HOH . 
D 4 HOH A 44 444 76 HOH HOH . 
D 4 HOH A 45 445 37 HOH HOH . 
D 4 HOH A 46 446 25 HOH HOH . 
D 4 HOH A 47 447 41 HOH HOH . 
D 4 HOH A 48 448 74 HOH HOH . 
D 4 HOH A 49 449 12 HOH HOH . 
D 4 HOH A 50 450 20 HOH HOH . 
D 4 HOH A 51 451 13 HOH HOH . 
D 4 HOH A 52 452 71 HOH HOH . 
D 4 HOH A 53 453 42 HOH HOH . 
D 4 HOH A 54 454 34 HOH HOH . 
D 4 HOH A 55 455 101 HOH HOH . 
D 4 HOH A 56 456 11 HOH HOH . 
D 4 HOH A 57 457 66 HOH HOH . 
D 4 HOH A 58 458 7 HOH HOH . 
D 4 HOH A 59 459 29 HOH HOH . 
D 4 HOH A 60 460 99 HOH HOH . 
D 4 HOH A 61 461 36 HOH HOH . 
D 4 HOH A 62 462 78 HOH HOH . 
D 4 HOH A 63 463 6 HOH HOH . 
D 4 HOH A 64 464 72 HOH HOH . 
D 4 HOH A 65 465 52 HOH HOH . 
D 4 HOH A 66 466 61 HOH HOH . 
D 4 HOH A 67 467 47 HOH HOH . 
D 4 HOH A 68 468 90 HOH HOH . 
D 4 HOH A 69 469 32 HOH HOH . 
D 4 HOH A 70 470 48 HOH HOH . 
D 4 HOH A 71 471 40 HOH HOH . 
D 4 HOH A 72 472 35 HOH HOH . 
D 4 HOH A 73 473 69 HOH HOH . 
D 4 HOH A 74 474 18 HOH HOH . 
D 4 HOH A 75 475 95 HOH HOH . 
D 4 HOH A 76 476 28 HOH HOH . 
D 4 HOH A 77 477 67 HOH HOH . 
D 4 HOH A 78 478 68 HOH HOH . 
D 4 HOH A 79 479 100 HOH HOH . 
D 4 HOH A 80 480 92 HOH HOH . 
D 4 HOH A 81 481 97 HOH HOH . 
D 4 HOH A 82 482 26 HOH HOH . 
D 4 HOH A 83 483 62 HOH HOH . 
D 4 HOH A 84 484 87 HOH HOH . 
D 4 HOH A 85 485 80 HOH HOH . 
D 4 HOH A 86 486 64 HOH HOH . 
D 4 HOH A 87 487 85 HOH HOH . 
D 4 HOH A 88 488 88 HOH HOH . 
D 4 HOH A 89 489 86 HOH HOH . 
D 4 HOH A 90 490 82 HOH HOH . 
D 4 HOH A 91 491 102 HOH HOH . 
D 4 HOH A 92 492 63 HOH HOH . 
D 4 HOH A 93 493 84 HOH HOH . 
D 4 HOH A 94 494 60 HOH HOH . 
E 4 HOH B 1 101 93 HOH HOH . 
E 4 HOH B 2 102 103 HOH HOH . 
E 4 HOH B 3 103 56 HOH HOH . 
E 4 HOH B 4 104 43 HOH HOH . 
E 4 HOH B 5 105 104 HOH HOH . 
E 4 HOH B 6 106 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG MGT . . . C 3 -7.575 -5.221 5.189 1 36.79 ? PG MGT 301 A 1 
HETATM 2 O O1G MGT . . . C 3 -8.57 -5.656 6.236 1 37.78 ? O1G MGT 301 A 1 
HETATM 3 O O2G MGT . . . C 3 -7.738 -3.77 4.797 1 36.9 ? O2G MGT 301 A 1 
HETATM 4 O O3G MGT . . . C 3 -7.454 -6.187 4.021 1 36.46 ? O3G MGT 301 A 1 
HETATM 5 O O3B MGT . . . C 3 -6.075 -5.322 5.826 1 28.91 ? O3B MGT 301 A 1 
HETATM 6 P PB MGT . . . C 3 -5.711 -5.698 7.343 1 24.14 ? PB MGT 301 A 1 
HETATM 7 O O1B MGT . . . C 3 -4.212 -5.769 7.523 1 24.34 ? O1B MGT 301 A 1 
HETATM 8 O O2B MGT . . . C 3 -6.453 -4.756 8.25 1 23.87 ? O2B MGT 301 A 1 
HETATM 9 O O3A MGT . . . C 3 -6.372 -7.165 7.521 1 23.72 ? O3A MGT 301 A 1 
HETATM 10 P PA MGT . . . C 3 -5.658 -8.613 7.623 1 20.88 ? PA MGT 301 A 1 
HETATM 11 O O1A MGT . . . C 3 -4.326 -8.579 8.308 1 22.26 ? O1A MGT 301 A 1 
HETATM 12 O O2A MGT . . . C 3 -6.759 -9.523 8.096 1 21.28 ? O2A MGT 301 A 1 
HETATM 13 O O5' MGT . . . C 3 -5.401 -8.977 6.073 1 20.14 ? O5' MGT 301 A 1 
HETATM 14 C C5' MGT . . . C 3 -4.431 -8.358 5.246 1 19.9 ? C5' MGT 301 A 1 
HETATM 15 C C4' MGT . . . C 3 -3.961 -9.343 4.175 1 19.66 ? C4' MGT 301 A 1 
HETATM 16 O O4' MGT . . . C 3 -3.219 -10.404 4.776 1 18.79 ? O4' MGT 301 A 1 
HETATM 17 C C3' MGT . . . C 3 -5.067 -10.047 3.391 1 19.91 ? C3' MGT 301 A 1 
HETATM 18 O O3' MGT . . . C 3 -5.594 -9.259 2.326 1 21.33 ? O3' MGT 301 A 1 
HETATM 19 C C2' MGT . . . C 3 -4.357 -11.284 2.898 1 19.38 ? C2' MGT 301 A 1 
HETATM 20 O O2' MGT . . . C 3 -3.566 -11.004 1.743 1 19.69 ? O2' MGT 301 A 1 
HETATM 21 C C1' MGT . . . C 3 -3.467 -11.628 4.08 1 19.08 ? C1' MGT 301 A 1 
HETATM 22 N N9 MGT . . . C 3 -4.182 -12.619 4.919 1 18.04 ? N9 MGT 301 A 1 
HETATM 23 C C8 MGT . . . C 3 -4.843 -12.174 6.148 1 18.37 ? C8 MGT 301 A 1 
HETATM 24 N N7 MGT . . . C 3 -5.351 -13.477 6.555 1 18.29 ? N7 MGT 301 A 1 
HETATM 25 C CM7 MGT . . . C 3 -6.138 -13.452 7.805 1 18.95 ? CM7 MGT 301 A 1 
HETATM 26 C C5 MGT . . . C 3 -5.045 -14.474 5.725 1 17.79 ? C5 MGT 301 A 1 
HETATM 27 C C6 MGT . . . C 3 -5.328 -15.91 5.721 1 17.98 ? C6 MGT 301 A 1 
HETATM 28 O O6 MGT . . . C 3 -5.997 -16.461 6.617 1 16.86 ? O6 MGT 301 A 1 
HETATM 29 N N1 MGT . . . C 3 -4.821 -16.592 4.665 1 18.05 ? N1 MGT 301 A 1 
HETATM 30 C C2 MGT . . . C 3 -4.105 -16.007 3.675 1 18.41 ? C2 MGT 301 A 1 
HETATM 31 N N2 MGT . . . C 3 -3.625 -16.753 2.653 1 19.11 ? N2 MGT 301 A 1 
HETATM 32 N N3 MGT . . . C 3 -3.803 -14.686 3.632 1 18.2 ? N3 MGT 301 A 1 
HETATM 33 C C4 MGT . . . C 3 -4.252 -13.896 4.625 1 18.16 ? C4 MGT 301 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#