data_5ZK3 # _model_server_result.job_id XlvuSj0nvTMej6syUN7WCg _model_server_result.datetime_utc '2024-12-03 17:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5ZK3 # _exptl.entry_id 5ZK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.412 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R)-1-azabicyclo[2.2.2]oct-3-yl hydroxy(diphenyl)acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99 _cell.angle_gamma 90 _cell.entry_id 5ZK3 _cell.length_a 46.48 _cell.length_b 58.8 _cell.length_c 89.32 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 98 A CYS 96 1_555 A SG CYS 178 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 362 A CYS 413 1_555 A SG CYS 365 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C21 H23 N O3' _chem_comp.formula_weight 337.412 _chem_comp.id QNB _chem_comp.mon_nstd_flag . _chem_comp.name '(3R)-1-azabicyclo[2.2.2]oct-3-yl hydroxy(diphenyl)acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C1 QNB sing 277 n n C14 C1 QNB sing 278 n n C1 O15 QNB sing 279 n n C1 C2 QNB sing 280 n n C3 C2 QNB doub 281 n y C2 C7 QNB sing 282 n y C3 C4 QNB sing 283 n y C3 H3 QNB sing 284 n n C4 C5 QNB doub 285 n y C4 H4 QNB sing 286 n n C5 C6 QNB sing 287 n y C5 H5 QNB sing 288 n n C7 C6 QNB doub 289 n y C6 H6 QNB sing 290 n n C7 H7 QNB sing 291 n n C13 C8 QNB doub 292 n y C9 C8 QNB sing 293 n y C10 C9 QNB doub 294 n y C9 H9 QNB sing 295 n n C11 C10 QNB sing 296 n y C10 H10 QNB sing 297 n n C11 C12 QNB doub 298 n y C11 H11 QNB sing 299 n n C12 C13 QNB sing 300 n y C12 H12 QNB sing 301 n n C13 H13 QNB sing 302 n n O17 C14 QNB sing 303 n n C14 O16 QNB doub 304 n n O15 HO15 QNB sing 305 n n O17 C18 QNB sing 306 n n C23 C18 QNB sing 307 n n C18 C19 QNB sing 308 n n C18 H18 QNB sing 309 n n N20 C19 QNB sing 310 n n C19 H19 QNB sing 311 n n C19 H19A QNB sing 312 n n C21 N20 QNB sing 313 n n C25 N20 QNB sing 314 n n C22 C21 QNB sing 315 n n C21 H21 QNB sing 316 n n C21 H21A QNB sing 317 n n C22 C23 QNB sing 318 n n C22 H22 QNB sing 319 n n C22 H22A QNB sing 320 n n C23 C24 QNB sing 321 n n C23 H23 QNB sing 322 n n C24 C25 QNB sing 323 n n C24 H24 QNB sing 324 n n C24 H24A QNB sing 325 n n C25 H25 QNB sing 326 n n C25 H25A QNB sing 327 n n # _atom_sites.entry_id 5ZK3 _atom_sites.fract_transf_matrix[1][1] 0.021515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003407 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QNB A 1 501 501 QNB QNB . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QNB . . . B 2 183.275 25.8 527.685 1 49.95 ? C1 QNB 501 A 1 HETATM 2 C C2 QNB . . . B 2 183.907 26.845 528.614 1 47.67 ? C2 QNB 501 A 1 HETATM 3 C C3 QNB . . . B 2 184.198 28.125 528.157 1 42.85 ? C3 QNB 501 A 1 HETATM 4 C C4 QNB . . . B 2 184.771 29.063 529 1 43.33 ? C4 QNB 501 A 1 HETATM 5 C C5 QNB . . . B 2 185.06 28.737 530.306 1 45.41 ? C5 QNB 501 A 1 HETATM 6 C C6 QNB . . . B 2 184.779 27.472 530.773 1 46.68 ? C6 QNB 501 A 1 HETATM 7 C C7 QNB . . . B 2 184.205 26.531 529.934 1 49.07 ? C7 QNB 501 A 1 HETATM 8 C C8 QNB . . . B 2 183.887 25.869 526.281 1 56.32 ? C8 QNB 501 A 1 HETATM 9 C C9 QNB . . . B 2 185.249 25.665 526.091 1 57.72 ? C9 QNB 501 A 1 HETATM 10 C C10 QNB . . . B 2 185.804 25.728 524.825 1 56.54 ? C10 QNB 501 A 1 HETATM 11 C C11 QNB . . . B 2 185.01 25.995 523.732 1 56.78 ? C11 QNB 501 A 1 HETATM 12 C C12 QNB . . . B 2 183.659 26.2 523.904 1 58.91 ? C12 QNB 501 A 1 HETATM 13 C C13 QNB . . . B 2 183.1 26.137 525.168 1 59.48 ? C13 QNB 501 A 1 HETATM 14 C C14 QNB . . . B 2 181.745 25.989 527.636 1 45.61 ? C14 QNB 501 A 1 HETATM 15 O O15 QNB . . . B 2 183.546 24.502 528.221 1 55.21 ? O15 QNB 501 A 1 HETATM 16 O O16 QNB . . . B 2 180.97 25.079 527.732 1 44.66 ? O16 QNB 501 A 1 HETATM 17 O O17 QNB . . . B 2 181.385 27.272 527.499 1 39.64 ? O17 QNB 501 A 1 HETATM 18 C C18 QNB . . . B 2 179.965 27.588 527.592 1 38.38 ? C18 QNB 501 A 1 HETATM 19 C C19 QNB . . . B 2 179.813 28.967 528.197 1 36.21 ? C19 QNB 501 A 1 HETATM 20 N N20 QNB . . . B 2 179.342 29.94 527.21 1 42.64 ? N20 QNB 501 A 1 HETATM 21 C C21 QNB . . . B 2 180.253 29.967 526.062 1 43.83 ? C21 QNB 501 A 1 HETATM 22 C C22 QNB . . . B 2 180.301 28.609 525.371 1 43.83 ? C22 QNB 501 A 1 HETATM 23 C C23 QNB . . . B 2 179.44 27.631 526.165 1 45.71 ? C23 QNB 501 A 1 HETATM 24 C C24 QNB . . . B 2 178.001 28.142 526.197 1 47.21 ? C24 QNB 501 A 1 HETATM 25 C C25 QNB . . . B 2 178.003 29.564 526.745 1 43.24 ? C25 QNB 501 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 47 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 618 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 25 #