data_5ZK9 # _model_server_result.job_id CpE17G4eRuEsNLL1qIvj3w _model_server_result.datetime_utc '2024-11-13 18:10:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 5ZK9 # _exptl.entry_id 5ZK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.72 _cell.angle_gamma 90 _cell.entry_id 5ZK9 _cell.length_a 91.42 _cell.length_b 38.08 _cell.length_c 78.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 1 1_555 B N ARG 2 B ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 B C ARG 7 B ARG 7 1_555 B N MK8 8 B MK8 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale3 B C MK8 8 B MK8 8 1_555 B N GLN 9 B GLN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.276 ? covale ? covale4 B C LEU 11 B LEU 11 1_555 B N MK8 12 B MK8 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale5 B C MK8 12 B MK8 12 1_555 B N LEU 13 B LEU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.274 ? covale ? covale6 B C LYS 14 B LYS 14 1_555 B N NH2 15 B NH2 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 336 n n C1 C2 PEG sing 337 n n C1 H11 PEG sing 338 n n C1 H12 PEG sing 339 n n O1 HO1 PEG sing 340 n n C2 O2 PEG sing 341 n n C2 H21 PEG sing 342 n n C2 H22 PEG sing 343 n n O2 C3 PEG sing 344 n n C3 C4 PEG sing 345 n n C3 H31 PEG sing 346 n n C3 H32 PEG sing 347 n n C4 O4 PEG sing 348 n n C4 H41 PEG sing 349 n n C4 H42 PEG sing 350 n n O4 HO4 PEG sing 351 n n # _atom_sites.entry_id 5ZK9 _atom_sites.fract_transf_matrix[1][1] 0.010939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGP A 1 1001 1001 MGP MGT . D 4 PEG A 1 1002 1 PEG PEG . E 4 PEG A 1 1003 3 PEG PEG . F 5 GOL A 1 1004 3 GOL GOL . G 6 HOH A 1 1101 211 HOH HOH . G 6 HOH A 2 1102 182 HOH HOH . G 6 HOH A 3 1103 151 HOH HOH . G 6 HOH A 4 1104 141 HOH HOH . G 6 HOH A 5 1105 173 HOH HOH . G 6 HOH A 6 1106 155 HOH HOH . G 6 HOH A 7 1107 82 HOH HOH . G 6 HOH A 8 1108 42 HOH HOH . G 6 HOH A 9 1109 60 HOH HOH . G 6 HOH A 10 1110 40 HOH HOH . G 6 HOH A 11 1111 85 HOH HOH . G 6 HOH A 12 1112 83 HOH HOH . G 6 HOH A 13 1113 218 HOH HOH . G 6 HOH A 14 1114 92 HOH HOH . G 6 HOH A 15 1115 71 HOH HOH . G 6 HOH A 16 1116 150 HOH HOH . G 6 HOH A 17 1117 26 HOH HOH . G 6 HOH A 18 1118 183 HOH HOH . G 6 HOH A 19 1119 121 HOH HOH . G 6 HOH A 20 1120 20 HOH HOH . G 6 HOH A 21 1121 69 HOH HOH . G 6 HOH A 22 1122 19 HOH HOH . G 6 HOH A 23 1123 97 HOH HOH . G 6 HOH A 24 1124 171 HOH HOH . G 6 HOH A 25 1125 17 HOH HOH . G 6 HOH A 26 1126 77 HOH HOH . G 6 HOH A 27 1127 94 HOH HOH . G 6 HOH A 28 1128 33 HOH HOH . G 6 HOH A 29 1129 58 HOH HOH . G 6 HOH A 30 1130 146 HOH HOH . G 6 HOH A 31 1131 154 HOH HOH . G 6 HOH A 32 1132 41 HOH HOH . G 6 HOH A 33 1133 6 HOH HOH . G 6 HOH A 34 1134 64 HOH HOH . G 6 HOH A 35 1135 46 HOH HOH . G 6 HOH A 36 1136 8 HOH HOH . G 6 HOH A 37 1137 113 HOH HOH . G 6 HOH A 38 1138 215 HOH HOH . G 6 HOH A 39 1139 118 HOH HOH . G 6 HOH A 40 1140 125 HOH HOH . G 6 HOH A 41 1141 38 HOH HOH . G 6 HOH A 42 1142 158 HOH HOH . G 6 HOH A 43 1143 32 HOH HOH . G 6 HOH A 44 1144 68 HOH HOH . G 6 HOH A 45 1145 75 HOH HOH . G 6 HOH A 46 1146 7 HOH HOH . G 6 HOH A 47 1147 62 HOH HOH . G 6 HOH A 48 1148 70 HOH HOH . G 6 HOH A 49 1149 43 HOH HOH . G 6 HOH A 50 1150 21 HOH HOH . G 6 HOH A 51 1151 159 HOH HOH . G 6 HOH A 52 1152 24 HOH HOH . G 6 HOH A 53 1153 56 HOH HOH . G 6 HOH A 54 1154 138 HOH HOH . G 6 HOH A 55 1155 50 HOH HOH . G 6 HOH A 56 1156 45 HOH HOH . G 6 HOH A 57 1157 13 HOH HOH . G 6 HOH A 58 1158 1 HOH HOH . G 6 HOH A 59 1159 67 HOH HOH . G 6 HOH A 60 1160 16 HOH HOH . G 6 HOH A 61 1161 104 HOH HOH . G 6 HOH A 62 1162 35 HOH HOH . G 6 HOH A 63 1163 2 HOH HOH . G 6 HOH A 64 1164 79 HOH HOH . G 6 HOH A 65 1165 15 HOH HOH . G 6 HOH A 66 1166 31 HOH HOH . G 6 HOH A 67 1167 149 HOH HOH . G 6 HOH A 68 1168 3 HOH HOH . G 6 HOH A 69 1169 78 HOH HOH . G 6 HOH A 70 1170 66 HOH HOH . G 6 HOH A 71 1171 54 HOH HOH . G 6 HOH A 72 1172 14 HOH HOH . G 6 HOH A 73 1173 5 HOH HOH . G 6 HOH A 74 1174 99 HOH HOH . G 6 HOH A 75 1175 63 HOH HOH . G 6 HOH A 76 1176 44 HOH HOH . G 6 HOH A 77 1177 39 HOH HOH . G 6 HOH A 78 1178 57 HOH HOH . G 6 HOH A 79 1179 74 HOH HOH . G 6 HOH A 80 1180 142 HOH HOH . G 6 HOH A 81 1181 167 HOH HOH . G 6 HOH A 82 1182 153 HOH HOH . G 6 HOH A 83 1183 9 HOH HOH . G 6 HOH A 84 1184 73 HOH HOH . G 6 HOH A 85 1185 55 HOH HOH . G 6 HOH A 86 1186 124 HOH HOH . G 6 HOH A 87 1187 72 HOH HOH . G 6 HOH A 88 1188 98 HOH HOH . G 6 HOH A 89 1189 10 HOH HOH . G 6 HOH A 90 1190 37 HOH HOH . G 6 HOH A 91 1191 95 HOH HOH . G 6 HOH A 92 1192 27 HOH HOH . G 6 HOH A 93 1193 36 HOH HOH . G 6 HOH A 94 1194 86 HOH HOH . G 6 HOH A 95 1195 76 HOH HOH . G 6 HOH A 96 1196 111 HOH HOH . G 6 HOH A 97 1197 145 HOH HOH . G 6 HOH A 98 1198 220 HOH HOH . G 6 HOH A 99 1199 23 HOH HOH . G 6 HOH A 100 1200 34 HOH HOH . G 6 HOH A 101 1201 90 HOH HOH . G 6 HOH A 102 1202 219 HOH HOH . G 6 HOH A 103 1203 53 HOH HOH . G 6 HOH A 104 1204 181 HOH HOH . G 6 HOH A 105 1205 28 HOH HOH . G 6 HOH A 106 1206 137 HOH HOH . G 6 HOH A 107 1207 87 HOH HOH . G 6 HOH A 108 1208 172 HOH HOH . G 6 HOH A 109 1209 106 HOH HOH . G 6 HOH A 110 1210 168 HOH HOH . G 6 HOH A 111 1211 109 HOH HOH . G 6 HOH A 112 1212 22 HOH HOH . G 6 HOH A 113 1213 47 HOH HOH . G 6 HOH A 114 1214 12 HOH HOH . G 6 HOH A 115 1215 81 HOH HOH . G 6 HOH A 116 1216 30 HOH HOH . G 6 HOH A 117 1217 25 HOH HOH . G 6 HOH A 118 1218 29 HOH HOH . G 6 HOH A 119 1219 18 HOH HOH . G 6 HOH A 120 1220 51 HOH HOH . G 6 HOH A 121 1221 221 HOH HOH . G 6 HOH A 122 1222 200 HOH HOH . G 6 HOH A 123 1223 48 HOH HOH . G 6 HOH A 124 1224 4 HOH HOH . G 6 HOH A 125 1225 114 HOH HOH . G 6 HOH A 126 1226 49 HOH HOH . G 6 HOH A 127 1227 180 HOH HOH . G 6 HOH A 128 1228 93 HOH HOH . G 6 HOH A 129 1229 135 HOH HOH . G 6 HOH A 130 1230 133 HOH HOH . G 6 HOH A 131 1231 217 HOH HOH . G 6 HOH A 132 1232 11 HOH HOH . G 6 HOH A 133 1233 176 HOH HOH . G 6 HOH A 134 1234 130 HOH HOH . G 6 HOH A 135 1235 174 HOH HOH . G 6 HOH A 136 1236 165 HOH HOH . G 6 HOH A 137 1237 184 HOH HOH . G 6 HOH A 138 1238 207 HOH HOH . G 6 HOH A 139 1239 101 HOH HOH . G 6 HOH A 140 1240 96 HOH HOH . G 6 HOH A 141 1241 157 HOH HOH . G 6 HOH A 142 1242 122 HOH HOH . G 6 HOH A 143 1243 132 HOH HOH . G 6 HOH A 144 1244 203 HOH HOH . G 6 HOH A 145 1245 65 HOH HOH . G 6 HOH A 146 1246 179 HOH HOH . G 6 HOH A 147 1247 148 HOH HOH . G 6 HOH A 148 1248 206 HOH HOH . G 6 HOH A 149 1249 119 HOH HOH . G 6 HOH A 150 1250 136 HOH HOH . G 6 HOH A 151 1251 100 HOH HOH . G 6 HOH A 152 1252 131 HOH HOH . G 6 HOH A 153 1253 163 HOH HOH . G 6 HOH A 154 1254 108 HOH HOH . G 6 HOH A 155 1255 103 HOH HOH . H 6 HOH B 1 101 84 HOH HOH . H 6 HOH B 2 102 139 HOH HOH . H 6 HOH B 3 103 107 HOH HOH . H 6 HOH B 4 104 52 HOH HOH . H 6 HOH B 5 105 61 HOH HOH . H 6 HOH B 6 106 170 HOH HOH . H 6 HOH B 7 107 80 HOH HOH . H 6 HOH B 8 108 198 HOH HOH . H 6 HOH B 9 109 178 HOH HOH . H 6 HOH B 10 110 214 HOH HOH . H 6 HOH B 11 111 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 -60.885 -27.819 80.83 1 46.95 ? C1 PEG 1002 A 1 HETATM 2 O O1 PEG . . . D 4 -62.107 -28.427 80.408 1 43.25 ? O1 PEG 1002 A 1 HETATM 3 C C2 PEG . . . D 4 -60.676 -27.979 82.338 1 46.6 ? C2 PEG 1002 A 1 HETATM 4 O O2 PEG . . . D 4 -60.111 -26.797 82.924 1 49.51 ? O2 PEG 1002 A 1 HETATM 5 C C3 PEG . . . D 4 -59.681 -27.011 84.272 1 46.3 ? C3 PEG 1002 A 1 HETATM 6 C C4 PEG . . . D 4 -60.109 -25.838 85.141 1 46.1 ? C4 PEG 1002 A 1 HETATM 7 O O4 PEG . . . D 4 -59.219 -25.627 86.24 1 41.72 ? O4 PEG 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #