data_5ZKK # _model_server_result.job_id Z_ibsqiipkP6td_7pqaNWQ _model_server_result.datetime_utc '2024-10-20 12:41:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":306}' # _entry.id 5ZKK # _exptl.entry_id 5ZKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZKK _cell.length_a 109.172 _cell.length_b 109.172 _cell.length_c 165.911 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 23 A CYS 23 1_555 C S2 BME . A BME 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? covale ? covale2 B SG CYS 23 B CYS 23 1_555 K S2 BME . B BME 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 294 n n O1 HO1 PG4 sing 295 n n C1 C2 PG4 sing 296 n n C1 H11 PG4 sing 297 n n C1 H12 PG4 sing 298 n n C2 O2 PG4 sing 299 n n C2 H21 PG4 sing 300 n n C2 H22 PG4 sing 301 n n O2 C3 PG4 sing 302 n n C3 C4 PG4 sing 303 n n C3 H31 PG4 sing 304 n n C3 H32 PG4 sing 305 n n C4 O3 PG4 sing 306 n n C4 H41 PG4 sing 307 n n C4 H42 PG4 sing 308 n n O3 C5 PG4 sing 309 n n C5 C6 PG4 sing 310 n n C5 H51 PG4 sing 311 n n C5 H52 PG4 sing 312 n n C6 O4 PG4 sing 313 n n C6 H61 PG4 sing 314 n n C6 H62 PG4 sing 315 n n O4 C7 PG4 sing 316 n n C7 C8 PG4 sing 317 n n C7 H71 PG4 sing 318 n n C7 H72 PG4 sing 319 n n C8 O5 PG4 sing 320 n n C8 H81 PG4 sing 321 n n C8 H82 PG4 sing 322 n n O5 HO5 PG4 sing 323 n n # _atom_sites.entry_id 5ZKK _atom_sites.fract_transf_matrix[1][1] 0.00916 _atom_sites.fract_transf_matrix[1][2] 0.005288 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BME A 1 301 2 BME BME . D 3 PO4 A 1 302 1 PO4 PO4 . E 4 PEG A 1 303 5 PEG PEG . F 4 PEG A 1 304 6 PEG PEG . G 4 PEG A 1 305 9 PEG PEG . H 5 144 A 1 306 1 144 144 . I 6 GOL A 1 307 2 GOL GOL . J 7 PG4 A 1 308 1 PG4 PG4 . K 2 BME B 1 301 1 BME BME . L 4 PEG B 1 302 3 PEG PEG . M 4 PEG B 1 303 4 PEG PEG . N 6 GOL B 1 304 1 GOL GOL . O 3 PO4 B 1 305 1 PO4 PO4 . P 7 PG4 B 1 306 2 PG4 PG4 . Q 8 HOH A 1 401 70 HOH HOH . Q 8 HOH A 2 402 103 HOH HOH . Q 8 HOH A 3 403 100 HOH HOH . Q 8 HOH A 4 404 111 HOH HOH . Q 8 HOH A 5 405 19 HOH HOH . Q 8 HOH A 6 406 58 HOH HOH . Q 8 HOH A 7 407 118 HOH HOH . Q 8 HOH A 8 408 31 HOH HOH . Q 8 HOH A 9 409 157 HOH HOH . Q 8 HOH A 10 410 5 HOH HOH . Q 8 HOH A 11 411 158 HOH HOH . Q 8 HOH A 12 412 66 HOH HOH . Q 8 HOH A 13 413 160 HOH HOH . Q 8 HOH A 14 414 134 HOH HOH . Q 8 HOH A 15 415 163 HOH HOH . Q 8 HOH A 16 416 45 HOH HOH . Q 8 HOH A 17 417 36 HOH HOH . Q 8 HOH A 18 418 116 HOH HOH . Q 8 HOH A 19 419 192 HOH HOH . Q 8 HOH A 20 420 30 HOH HOH . Q 8 HOH A 21 421 57 HOH HOH . Q 8 HOH A 22 422 176 HOH HOH . Q 8 HOH A 23 423 13 HOH HOH . Q 8 HOH A 24 424 22 HOH HOH . Q 8 HOH A 25 425 33 HOH HOH . Q 8 HOH A 26 426 4 HOH HOH . Q 8 HOH A 27 427 146 HOH HOH . Q 8 HOH A 28 428 59 HOH HOH . Q 8 HOH A 29 429 53 HOH HOH . Q 8 HOH A 30 430 48 HOH HOH . Q 8 HOH A 31 431 46 HOH HOH . Q 8 HOH A 32 432 7 HOH HOH . Q 8 HOH A 33 433 194 HOH HOH . Q 8 HOH A 34 434 154 HOH HOH . Q 8 HOH A 35 435 214 HOH HOH . Q 8 HOH A 36 436 83 HOH HOH . Q 8 HOH A 37 437 32 HOH HOH . Q 8 HOH A 38 438 119 HOH HOH . Q 8 HOH A 39 439 190 HOH HOH . Q 8 HOH A 40 440 44 HOH HOH . Q 8 HOH A 41 441 211 HOH HOH . Q 8 HOH A 42 442 12 HOH HOH . Q 8 HOH A 43 443 73 HOH HOH . Q 8 HOH A 44 444 35 HOH HOH . Q 8 HOH A 45 445 120 HOH HOH . Q 8 HOH A 46 446 88 HOH HOH . Q 8 HOH A 47 447 34 HOH HOH . Q 8 HOH A 48 448 47 HOH HOH . Q 8 HOH A 49 449 108 HOH HOH . Q 8 HOH A 50 450 37 HOH HOH . Q 8 HOH A 51 451 184 HOH HOH . Q 8 HOH A 52 452 162 HOH HOH . Q 8 HOH A 53 453 75 HOH HOH . Q 8 HOH A 54 454 196 HOH HOH . Q 8 HOH A 55 455 80 HOH HOH . Q 8 HOH A 56 456 50 HOH HOH . Q 8 HOH A 57 457 189 HOH HOH . Q 8 HOH A 58 458 133 HOH HOH . Q 8 HOH A 59 459 91 HOH HOH . Q 8 HOH A 60 460 64 HOH HOH . Q 8 HOH A 61 461 147 HOH HOH . Q 8 HOH A 62 462 141 HOH HOH . Q 8 HOH A 63 463 72 HOH HOH . Q 8 HOH A 64 464 20 HOH HOH . Q 8 HOH A 65 465 155 HOH HOH . Q 8 HOH A 66 466 104 HOH HOH . Q 8 HOH A 67 467 191 HOH HOH . Q 8 HOH A 68 468 156 HOH HOH . Q 8 HOH A 69 469 188 HOH HOH . Q 8 HOH A 70 470 78 HOH HOH . Q 8 HOH A 71 471 79 HOH HOH . Q 8 HOH A 72 472 113 HOH HOH . Q 8 HOH A 73 473 181 HOH HOH . Q 8 HOH A 74 474 149 HOH HOH . Q 8 HOH A 75 475 142 HOH HOH . Q 8 HOH A 76 476 115 HOH HOH . Q 8 HOH A 77 477 204 HOH HOH . Q 8 HOH A 78 478 179 HOH HOH . Q 8 HOH A 79 479 107 HOH HOH . Q 8 HOH A 80 480 201 HOH HOH . Q 8 HOH A 81 481 186 HOH HOH . Q 8 HOH A 82 482 187 HOH HOH . Q 8 HOH A 83 483 148 HOH HOH . Q 8 HOH A 84 484 171 HOH HOH . Q 8 HOH A 85 485 203 HOH HOH . Q 8 HOH A 86 486 130 HOH HOH . Q 8 HOH A 87 487 198 HOH HOH . Q 8 HOH A 88 488 71 HOH HOH . Q 8 HOH A 89 489 109 HOH HOH . Q 8 HOH A 90 490 166 HOH HOH . Q 8 HOH A 91 491 185 HOH HOH . Q 8 HOH A 92 492 200 HOH HOH . Q 8 HOH A 93 493 122 HOH HOH . Q 8 HOH A 94 494 82 HOH HOH . Q 8 HOH A 95 495 173 HOH HOH . Q 8 HOH A 96 496 208 HOH HOH . Q 8 HOH A 97 497 212 HOH HOH . R 8 HOH B 1 401 15 HOH HOH . R 8 HOH B 2 402 150 HOH HOH . R 8 HOH B 3 403 202 HOH HOH . R 8 HOH B 4 404 85 HOH HOH . R 8 HOH B 5 405 8 HOH HOH . R 8 HOH B 6 406 23 HOH HOH . R 8 HOH B 7 407 17 HOH HOH . R 8 HOH B 8 408 60 HOH HOH . R 8 HOH B 9 409 86 HOH HOH . R 8 HOH B 10 410 87 HOH HOH . R 8 HOH B 11 411 69 HOH HOH . R 8 HOH B 12 412 76 HOH HOH . R 8 HOH B 13 413 144 HOH HOH . R 8 HOH B 14 414 26 HOH HOH . R 8 HOH B 15 415 55 HOH HOH . R 8 HOH B 16 416 3 HOH HOH . R 8 HOH B 17 417 139 HOH HOH . R 8 HOH B 18 418 94 HOH HOH . R 8 HOH B 19 419 65 HOH HOH . R 8 HOH B 20 420 84 HOH HOH . R 8 HOH B 21 421 128 HOH HOH . R 8 HOH B 22 422 18 HOH HOH . R 8 HOH B 23 423 38 HOH HOH . R 8 HOH B 24 424 210 HOH HOH . R 8 HOH B 25 425 10 HOH HOH . R 8 HOH B 26 426 40 HOH HOH . R 8 HOH B 27 427 11 HOH HOH . R 8 HOH B 28 428 195 HOH HOH . R 8 HOH B 29 429 143 HOH HOH . R 8 HOH B 30 430 42 HOH HOH . R 8 HOH B 31 431 74 HOH HOH . R 8 HOH B 32 432 1 HOH HOH . R 8 HOH B 33 433 54 HOH HOH . R 8 HOH B 34 434 28 HOH HOH . R 8 HOH B 35 435 51 HOH HOH . R 8 HOH B 36 436 77 HOH HOH . R 8 HOH B 37 437 41 HOH HOH . R 8 HOH B 38 438 101 HOH HOH . R 8 HOH B 39 439 124 HOH HOH . R 8 HOH B 40 440 197 HOH HOH . R 8 HOH B 41 441 159 HOH HOH . R 8 HOH B 42 442 6 HOH HOH . R 8 HOH B 43 443 56 HOH HOH . R 8 HOH B 44 444 62 HOH HOH . R 8 HOH B 45 445 2 HOH HOH . R 8 HOH B 46 446 152 HOH HOH . R 8 HOH B 47 447 25 HOH HOH . R 8 HOH B 48 448 135 HOH HOH . R 8 HOH B 49 449 89 HOH HOH . R 8 HOH B 50 450 16 HOH HOH . R 8 HOH B 51 451 63 HOH HOH . R 8 HOH B 52 452 52 HOH HOH . R 8 HOH B 53 453 14 HOH HOH . R 8 HOH B 54 454 90 HOH HOH . R 8 HOH B 55 455 67 HOH HOH . R 8 HOH B 56 456 153 HOH HOH . R 8 HOH B 57 457 24 HOH HOH . R 8 HOH B 58 458 29 HOH HOH . R 8 HOH B 59 459 121 HOH HOH . R 8 HOH B 60 460 81 HOH HOH . R 8 HOH B 61 461 21 HOH HOH . R 8 HOH B 62 462 105 HOH HOH . R 8 HOH B 63 463 27 HOH HOH . R 8 HOH B 64 464 68 HOH HOH . R 8 HOH B 65 465 9 HOH HOH . R 8 HOH B 66 466 99 HOH HOH . R 8 HOH B 67 467 43 HOH HOH . R 8 HOH B 68 468 49 HOH HOH . R 8 HOH B 69 469 174 HOH HOH . R 8 HOH B 70 470 137 HOH HOH . R 8 HOH B 71 471 165 HOH HOH . R 8 HOH B 72 472 112 HOH HOH . R 8 HOH B 73 473 131 HOH HOH . R 8 HOH B 74 474 127 HOH HOH . R 8 HOH B 75 475 102 HOH HOH . R 8 HOH B 76 476 39 HOH HOH . R 8 HOH B 77 477 138 HOH HOH . R 8 HOH B 78 478 169 HOH HOH . R 8 HOH B 79 479 170 HOH HOH . R 8 HOH B 80 480 209 HOH HOH . R 8 HOH B 81 481 215 HOH HOH . R 8 HOH B 82 482 207 HOH HOH . R 8 HOH B 83 483 123 HOH HOH . R 8 HOH B 84 484 114 HOH HOH . R 8 HOH B 85 485 92 HOH HOH . R 8 HOH B 86 486 97 HOH HOH . R 8 HOH B 87 487 61 HOH HOH . R 8 HOH B 88 488 177 HOH HOH . R 8 HOH B 89 489 93 HOH HOH . R 8 HOH B 90 490 96 HOH HOH . R 8 HOH B 91 491 110 HOH HOH . R 8 HOH B 92 492 136 HOH HOH . R 8 HOH B 93 493 164 HOH HOH . R 8 HOH B 94 494 151 HOH HOH . R 8 HOH B 95 495 132 HOH HOH . R 8 HOH B 96 496 168 HOH HOH . R 8 HOH B 97 497 182 HOH HOH . R 8 HOH B 98 498 172 HOH HOH . R 8 HOH B 99 499 193 HOH HOH . R 8 HOH B 100 500 205 HOH HOH . R 8 HOH B 101 501 213 HOH HOH . R 8 HOH B 102 502 183 HOH HOH . R 8 HOH B 103 503 145 HOH HOH . R 8 HOH B 104 504 178 HOH HOH . R 8 HOH B 105 505 199 HOH HOH . R 8 HOH B 106 506 106 HOH HOH . R 8 HOH B 107 507 175 HOH HOH . R 8 HOH B 108 508 206 HOH HOH . R 8 HOH B 109 509 126 HOH HOH . R 8 HOH B 110 510 167 HOH HOH . R 8 HOH B 111 511 161 HOH HOH . R 8 HOH B 112 512 117 HOH HOH . R 8 HOH B 113 513 129 HOH HOH . R 8 HOH B 114 514 180 HOH HOH . R 8 HOH B 115 515 125 HOH HOH . R 8 HOH B 116 516 140 HOH HOH . R 8 HOH B 117 517 98 HOH HOH . R 8 HOH B 118 518 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . P 7 41.152 27.288 20.936 1 61.95 ? O1 PG4 306 B 1 HETATM 2 C C1 PG4 . . . P 7 41.164 26.206 19.96 1 60.34 ? C1 PG4 306 B 1 HETATM 3 C C2 PG4 . . . P 7 39.84 25.852 19.212 1 58.6 ? C2 PG4 306 B 1 HETATM 4 O O2 PG4 . . . P 7 40.134 25.407 17.841 1 56.09 ? O2 PG4 306 B 1 HETATM 5 C C3 PG4 . . . P 7 39.774 26.106 16.644 1 41.52 ? C3 PG4 306 B 1 HETATM 6 C C4 PG4 . . . P 7 40.871 26.514 15.653 1 39.22 ? C4 PG4 306 B 1 HETATM 7 O O3 PG4 . . . P 7 41.712 27.62 16.107 1 41.77 ? O3 PG4 306 B 1 HETATM 8 C C5 PG4 . . . P 7 41.988 28.826 15.391 1 38.62 ? C5 PG4 306 B 1 HETATM 9 C C6 PG4 . . . P 7 43.012 29.849 15.935 1 35.69 ? C6 PG4 306 B 1 HETATM 10 O O4 PG4 . . . P 7 43.037 30.583 17.232 1 40.86 ? O4 PG4 306 B 1 HETATM 11 C C7 PG4 . . . P 7 42.489 29.993 18.396 1 58.69 ? C7 PG4 306 B 1 HETATM 12 C C8 PG4 . . . P 7 42.49 30.596 19.819 1 54.06 ? C8 PG4 306 B 1 HETATM 13 O O5 PG4 . . . P 7 42.375 31.932 19.469 1 54.32 ? O5 PG4 306 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #