data_5ZKP # _model_server_result.job_id Fiu_eDMY2REOmfvi4Kl7aQ _model_server_result.datetime_utc '2025-02-05 04:43:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5ZKP # _exptl.entry_id 5ZKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.709 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N1,N1-dimethyl-N2-[(pyridin-3-yl)methyl]-N2-{4-[2,4,6-tri(propan-2-yl)phenyl]-1,3-thiazol-2-yl}ethane-1,2-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZKP _cell.length_a 67.05 _cell.length_b 67.05 _cell.length_c 280.25 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 90 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 175 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 173 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H40 N4 S' _chem_comp.formula_weight 464.709 _chem_comp.id 9ER _chem_comp.mon_nstd_flag . _chem_comp.name N1,N1-dimethyl-N2-[(pyridin-3-yl)methyl]-N2-{4-[2,4,6-tri(propan-2-yl)phenyl]-1,3-thiazol-2-yl}ethane-1,2-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBG CBE 9ER sing 1 n n CBE CBF 9ER sing 2 n n CBE CAF 9ER sing 3 n n CAC CAB 9ER sing 4 n n CAE CAF 9ER doub 5 n y CAE CAD 9ER sing 6 n y CAA CAB 9ER sing 7 n n CAF CAG 9ER sing 8 n y CAB CAD 9ER sing 9 n n CAD CAI 9ER doub 10 n y CAN CAM 9ER doub 11 n y CAN SAO 9ER sing 12 n y CAG CAM 9ER sing 13 n n CAG CAH 9ER doub 14 n y CAM NAQ 9ER sing 15 n y CAI CAH 9ER sing 16 n y SAO CAP 9ER sing 17 n y CBC CBD 9ER doub 18 n y CBC CBB 9ER sing 19 n y CAH CAJ 9ER sing 20 n n CBD CAY 9ER sing 21 n y NAQ CAP 9ER doub 22 n y CAP NAR 9ER sing 23 n n CBB NBA 9ER doub 24 n y CAK CAJ 9ER sing 25 n n CAJ CAL 9ER sing 26 n n NAR CAX 9ER sing 27 n n NAR CAS 9ER sing 28 n n CAY CAX 9ER sing 29 n n CAY CAZ 9ER doub 30 n y CAS CAT 9ER sing 31 n n NBA CAZ 9ER sing 32 n y CAT NAU 9ER sing 33 n n NAU CAV 9ER sing 34 n n NAU CAW 9ER sing 35 n n CAK H1 9ER sing 36 n n CAK H2 9ER sing 37 n n CAK H3 9ER sing 38 n n CAJ H4 9ER sing 39 n n CAL H5 9ER sing 40 n n CAL H6 9ER sing 41 n n CAL H7 9ER sing 42 n n CAI H8 9ER sing 43 n n CAB H9 9ER sing 44 n n CAA H10 9ER sing 45 n n CAA H11 9ER sing 46 n n CAA H12 9ER sing 47 n n CAC H13 9ER sing 48 n n CAC H14 9ER sing 49 n n CAC H15 9ER sing 50 n n CAE H16 9ER sing 51 n n CBE H17 9ER sing 52 n n CBF H18 9ER sing 53 n n CBF H19 9ER sing 54 n n CBF H20 9ER sing 55 n n CBG H21 9ER sing 56 n n CBG H22 9ER sing 57 n n CBG H23 9ER sing 58 n n CAN H24 9ER sing 59 n n CAS H25 9ER sing 60 n n CAS H26 9ER sing 61 n n CAT H27 9ER sing 62 n n CAT H28 9ER sing 63 n n CAV H30 9ER sing 64 n n CAV H31 9ER sing 65 n n CAV H32 9ER sing 66 n n CAW H33 9ER sing 67 n n CAW H34 9ER sing 68 n n CAW H35 9ER sing 69 n n CAX H36 9ER sing 70 n n CAX H37 9ER sing 71 n n CBD H38 9ER sing 72 n n CBC H39 9ER sing 73 n n CBB H40 9ER sing 74 n n CAZ H41 9ER sing 75 n n # _atom_sites.entry_id 5ZKP _atom_sites.fract_transf_matrix[1][1] 0.014914 _atom_sites.fract_transf_matrix[1][2] 0.008611 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9ER A 1 1201 1201 9ER 9ER . C 3 FMN A 1 1202 1202 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAK 9ER . . . B 2 29.137 -3.382 9.551 1 77.84 ? CAK 9ER 1201 A 1 HETATM 2 C CAJ 9ER . . . B 2 29.93 -4.672 9.842 1 77.71 ? CAJ 9ER 1201 A 1 HETATM 3 C CAL 9ER . . . B 2 30.747 -4.715 11.145 1 77.04 ? CAL 9ER 1201 A 1 HETATM 4 C CAH 9ER . . . B 2 30.474 -5.334 8.722 1 77.92 ? CAH 9ER 1201 A 1 HETATM 5 C CAI 9ER . . . B 2 29.784 -6.5 8.431 1 78.4 ? CAI 9ER 1201 A 1 HETATM 6 C CAD 9ER . . . B 2 30.105 -7.331 7.366 1 77.41 ? CAD 9ER 1201 A 1 HETATM 7 C CAB 9ER . . . B 2 29.328 -8.497 7.241 1 74.09 ? CAB 9ER 1201 A 1 HETATM 8 C CAA 9ER . . . B 2 27.939 -8.199 6.692 1 73.63 ? CAA 9ER 1201 A 1 HETATM 9 C CAC 9ER . . . B 2 30.006 -9.671 6.53 1 72.65 ? CAC 9ER 1201 A 1 HETATM 10 C CAE 9ER . . . B 2 31.2 -6.974 6.557 1 78.07 ? CAE 9ER 1201 A 1 HETATM 11 C CAF 9ER . . . B 2 31.948 -5.792 6.809 1 75.72 ? CAF 9ER 1201 A 1 HETATM 12 C CBE 9ER . . . B 2 33.03 -5.437 5.959 1 66.61 ? CBE 9ER 1201 A 1 HETATM 13 C CBF 9ER . . . B 2 34.186 -6.433 5.981 1 61.97 ? CBF 9ER 1201 A 1 HETATM 14 C CBG 9ER . . . B 2 32.564 -5.165 4.539 1 66.1 ? CBG 9ER 1201 A 1 HETATM 15 C CAG 9ER . . . B 2 31.556 -4.934 7.883 1 78.99 ? CAG 9ER 1201 A 1 HETATM 16 C CAM 9ER . . . B 2 32.283 -3.832 8.176 1 80.59 ? CAM 9ER 1201 A 1 HETATM 17 N NAQ 9ER . . . B 2 33.36 -3.928 8.977 1 79.39 ? NAQ 9ER 1201 A 1 HETATM 18 C CAN 9ER . . . B 2 31.981 -2.587 7.766 1 80.4 ? CAN 9ER 1201 A 1 HETATM 19 S SAO 9ER . . . B 2 33.123 -1.589 8.438 1 78.65 ? SAO 9ER 1201 A 1 HETATM 20 C CAP 9ER . . . B 2 33.964 -2.767 9.211 1 78.02 ? CAP 9ER 1201 A 1 HETATM 21 N NAR 9ER . . . B 2 35.023 -2.633 10.02 1 76.88 ? NAR 9ER 1201 A 1 HETATM 22 C CAS 9ER . . . B 2 35.582 -3.838 10.697 1 77.9 ? CAS 9ER 1201 A 1 HETATM 23 C CAT 9ER . . . B 2 34.956 -3.968 12.096 1 80.43 ? CAT 9ER 1201 A 1 HETATM 24 N NAU 9ER . . . B 2 35.121 -5.302 12.682 1 82.78 ? NAU 9ER 1201 A 1 HETATM 25 C CAV 9ER . . . B 2 33.814 -5.702 13.23 1 83.15 ? CAV 9ER 1201 A 1 HETATM 26 C CAW 9ER . . . B 2 36.097 -5.245 13.782 1 84.24 ? CAW 9ER 1201 A 1 HETATM 27 C CAX 9ER . . . B 2 35.607 -1.288 10.378 1 72.39 ? CAX 9ER 1201 A 1 HETATM 28 C CAY 9ER . . . B 2 36.972 -1.251 10.103 1 67.3 ? CAY 9ER 1201 A 1 HETATM 29 C CBD 9ER . . . B 2 37.412 -1.056 8.789 1 66.4 ? CBD 9ER 1201 A 1 HETATM 30 C CBC 9ER . . . B 2 38.776 -1.125 8.486 1 65.33 ? CBC 9ER 1201 A 1 HETATM 31 C CBB 9ER . . . B 2 39.713 -1.384 9.492 1 64.39 ? CBB 9ER 1201 A 1 HETATM 32 N NBA 9ER . . . B 2 39.267 -1.572 10.813 1 64.69 ? NBA 9ER 1201 A 1 HETATM 33 C CAZ 9ER . . . B 2 37.895 -1.494 11.123 1 64.87 ? CAZ 9ER 1201 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #