data_5ZKP
#
_model_server_result.job_id            vEh4-GmRauVbC4jNPcaThA 
_model_server_result.datetime_utc      '2025-02-05 04:36:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zkp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1202}' 
#
_entry.id    5ZKP 
#
_exptl.entry_id    5ZKP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ZKP 
_cell.length_a            67.05 
_cell.length_b            67.05 
_cell.length_c            280.25 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZKP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             92 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              90 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             175 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              173 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.034 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 158 n n 
N1 C10 FMN doub 159 n n 
C2 O2 FMN doub 160 n n 
C2 N3 FMN sing 161 n n 
N3 C4 FMN sing 162 n n 
N3 HN3 FMN sing 163 n n 
C4 O4 FMN doub 164 n n 
C4 C4A FMN sing 165 n n 
C4A N5 FMN doub 166 n n 
C4A C10 FMN sing 167 n n 
N5 C5A FMN sing 168 n n 
C5A C6 FMN doub 169 n y 
C5A C9A FMN sing 170 n y 
C6 C7 FMN sing 171 n y 
C6 H6 FMN sing 172 n n 
C7 C7M FMN sing 173 n n 
C7 C8 FMN doub 174 n y 
C7M HM71 FMN sing 175 n n 
C7M HM72 FMN sing 176 n n 
C7M HM73 FMN sing 177 n n 
C8 C8M FMN sing 178 n n 
C8 C9 FMN sing 179 n y 
C8M HM81 FMN sing 180 n n 
C8M HM82 FMN sing 181 n n 
C8M HM83 FMN sing 182 n n 
C9 C9A FMN doub 183 n y 
C9 H9 FMN sing 184 n n 
C9A N10 FMN sing 185 n n 
N10 C10 FMN sing 186 n n 
N10 C1' FMN sing 187 n n 
C1' C2' FMN sing 188 n n 
C1' "H1'1" FMN sing 189 n n 
C1' "H1'2" FMN sing 190 n n 
C2' O2' FMN sing 191 n n 
C2' C3' FMN sing 192 n n 
C2' H2' FMN sing 193 n n 
O2' HO2' FMN sing 194 n n 
C3' O3' FMN sing 195 n n 
C3' C4' FMN sing 196 n n 
C3' H3' FMN sing 197 n n 
O3' HO3' FMN sing 198 n n 
C4' O4' FMN sing 199 n n 
C4' C5' FMN sing 200 n n 
C4' H4' FMN sing 201 n n 
O4' HO4' FMN sing 202 n n 
C5' O5' FMN sing 203 n n 
C5' "H5'1" FMN sing 204 n n 
C5' "H5'2" FMN sing 205 n n 
O5' P FMN sing 206 n n 
P O1P FMN doub 207 n n 
P O2P FMN sing 208 n n 
P O3P FMN sing 209 n n 
O2P HOP2 FMN sing 210 n n 
O3P HOP3 FMN sing 211 n n 
#
_atom_sites.entry_id                     5ZKP 
_atom_sites.fract_transf_matrix[1][1]    0.014914 
_atom_sites.fract_transf_matrix[1][2]    0.008611 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9ER A 1 1201 1201 9ER 9ER . 
C 3 FMN A 1 1202 1202 FMN FMN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 3 48.809 -16.505 -59.457 1 132.87 ? N1 FMN 1202 A 1 
HETATM 2 C C2 FMN . . . C 3 48.614 -15.267 -58.825 1 133.88 ? C2 FMN 1202 A 1 
HETATM 3 O O2 FMN . . . C 3 49.262 -14.971 -57.823 1 132.87 ? O2 FMN 1202 A 1 
HETATM 4 N N3 FMN . . . C 3 47.671 -14.364 -59.343 1 136.18 ? N3 FMN 1202 A 1 
HETATM 5 C C4 FMN . . . C 3 46.928 -14.688 -60.5 1 137.73 ? C4 FMN 1202 A 1 
HETATM 6 O O4 FMN . . . C 3 46.1 -13.873 -60.922 1 139.6 ? O4 FMN 1202 A 1 
HETATM 7 C C4A FMN . . . C 3 47.113 -15.94 -61.113 1 135.74 ? C4A FMN 1202 A 1 
HETATM 8 N N5 FMN . . . C 3 46.405 -16.266 -62.214 1 135.21 ? N5 FMN 1202 A 1 
HETATM 9 C C5A FMN . . . C 3 46.756 -17.33 -62.954 1 134.65 ? C5A FMN 1202 A 1 
HETATM 10 C C6 FMN . . . C 3 46.17 -17.504 -64.21 1 135.8 ? C6 FMN 1202 A 1 
HETATM 11 C C7 FMN . . . C 3 46.528 -18.586 -65.018 1 136.42 ? C7 FMN 1202 A 1 
HETATM 12 C C7M FMN . . . C 3 45.904 -18.698 -66.264 1 137.22 ? C7M FMN 1202 A 1 
HETATM 13 C C8 FMN . . . C 3 47.48 -19.514 -64.548 1 136.19 ? C8 FMN 1202 A 1 
HETATM 14 C C8M FMN . . . C 3 47.894 -20.622 -65.294 1 137.48 ? C8M FMN 1202 A 1 
HETATM 15 C C9 FMN . . . C 3 48.06 -19.33 -63.289 1 134.6 ? C9 FMN 1202 A 1 
HETATM 16 C C9A FMN . . . C 3 47.695 -18.255 -62.46 1 133.68 ? C9A FMN 1202 A 1 
HETATM 17 N N10 FMN . . . C 3 48.276 -18.04 -61.239 1 131.95 ? N10 FMN 1202 A 1 
HETATM 18 C C10 FMN . . . C 3 48.043 -16.865 -60.59 1 133.34 ? C10 FMN 1202 A 1 
HETATM 19 C C1' FMN . . . C 3 49.363 -18.948 -60.726 1 128 ? C1' FMN 1202 A 1 
HETATM 20 C C2' FMN . . . C 3 48.893 -20.126 -59.862 1 120.39 ? C2' FMN 1202 A 1 
HETATM 21 O O2' FMN . . . C 3 48.302 -19.611 -58.668 1 117.84 ? O2' FMN 1202 A 1 
HETATM 22 C C3' FMN . . . C 3 50.131 -21.016 -59.594 1 117.52 ? C3' FMN 1202 A 1 
HETATM 23 O O3' FMN . . . C 3 50.291 -21.949 -60.668 1 119.66 ? O3' FMN 1202 A 1 
HETATM 24 C C4' FMN . . . C 3 50.131 -21.731 -58.221 1 111.68 ? C4' FMN 1202 A 1 
HETATM 25 O O4' FMN . . . C 3 51.443 -21.655 -57.645 1 112.25 ? O4' FMN 1202 A 1 
HETATM 26 C C5' FMN . . . C 3 49.715 -23.202 -58.331 1 108.16 ? C5' FMN 1202 A 1 
HETATM 27 O O5' FMN . . . C 3 48.814 -23.536 -57.274 1 103.86 ? O5' FMN 1202 A 1 
HETATM 28 P P FMN . . . C 3 47.945 -24.896 -57.315 1 101.98 ? P FMN 1202 A 1 
HETATM 29 O O1P FMN . . . C 3 46.664 -24.775 -58.036 1 100.87 ? O1P FMN 1202 A 1 
HETATM 30 O O2P FMN . . . C 3 48.892 -26.031 -57.877 1 105.61 ? O2P FMN 1202 A 1 
HETATM 31 O O3P FMN . . . C 3 47.731 -25.344 -55.813 1 99.64 ? O3P FMN 1202 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#