data_5ZKV # _model_server_result.job_id hFZQ0wVyYIDjvq7oDfNn4w _model_server_result.datetime_utc '2024-10-19 19:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ZKV # _exptl.entry_id 5ZKV _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 14 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? covale ? covale2 A SG CYS 17 A CYS 17 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZKV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 201 _pdbx_nonpoly_scheme.pdb_mon_id HEC _pdbx_nonpoly_scheme.auth_mon_id HEC _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 1.794 -4.76 3.307 1 0 ? FE HEC 201 A 1 HETATM 2 C CHA HEC . . . B 2 4.54 -4.866 1.324 1 0 ? CHA HEC 201 A 1 HETATM 3 C CHB HEC . . . B 2 0.129 -3.059 1.064 1 0 ? CHB HEC 201 A 1 HETATM 4 C CHC HEC . . . B 2 -1.081 -5.611 4.858 1 0 ? CHC HEC 201 A 1 HETATM 5 C CHD HEC . . . B 2 3.562 -5.859 5.886 1 0 ? CHD HEC 201 A 1 HETATM 6 N NA HEC . . . B 2 2.231 -4.292 1.449 1 0 ? NA HEC 201 A 1 HETATM 7 C C1A HEC . . . B 2 3.485 -4.075 0.98 1 0 ? C1A HEC 201 A 1 HETATM 8 C C2A HEC . . . B 2 3.562 -2.902 0.141 1 0 ? C2A HEC 201 A 1 HETATM 9 C C3A HEC . . . B 2 2.32 -2.383 0.102 1 0 ? C3A HEC 201 A 1 HETATM 10 C C4A HEC . . . B 2 1.486 -3.246 0.911 1 0 ? C4A HEC 201 A 1 HETATM 11 C CMA HEC . . . B 2 1.888 -1.136 -0.649 1 0 ? CMA HEC 201 A 1 HETATM 12 C CAA HEC . . . B 2 4.796 -2.354 -0.559 1 0 ? CAA HEC 201 A 1 HETATM 13 C CBA HEC . . . B 2 4.587 -0.937 -1.066 1 0 ? CBA HEC 201 A 1 HETATM 14 C CGA HEC . . . B 2 5.915 -0.346 -1.506 1 0 ? CGA HEC 201 A 1 HETATM 15 O O1A HEC . . . B 2 6.104 0.836 -1.265 1 0 ? O1A HEC 201 A 1 HETATM 16 O O2A HEC . . . B 2 6.698 -1.094 -2.068 1 0 ? O2A HEC 201 A 1 HETATM 17 N NB HEC . . . B 2 -0.102 -4.473 2.963 1 0 ? NB HEC 201 A 1 HETATM 18 C C1B HEC . . . B 2 -0.625 -3.631 2.04 1 0 ? C1B HEC 201 A 1 HETATM 19 C C2B HEC . . . B 2 -2.04 -3.407 2.242 1 0 ? C2B HEC 201 A 1 HETATM 20 C C3B HEC . . . B 2 -2.391 -4.166 3.396 1 0 ? C3B HEC 201 A 1 HETATM 21 C C4B HEC . . . B 2 -1.172 -4.79 3.767 1 0 ? C4B HEC 201 A 1 HETATM 22 C CMB HEC . . . B 2 -2.959 -2.532 1.407 1 0 ? CMB HEC 201 A 1 HETATM 23 C CAB HEC . . . B 2 -3.769 -4.232 3.941 1 0 ? CAB HEC 201 A 1 HETATM 24 C CBB HEC . . . B 2 -4.959 -4.173 3.001 1 0 ? CBB HEC 201 A 1 HETATM 25 N NC HEC . . . B 2 1.34 -5.497 5.058 1 0 ? NC HEC 201 A 1 HETATM 26 C C1C HEC . . . B 2 0.092 -5.907 5.503 1 0 ? C1C HEC 201 A 1 HETATM 27 C C2C HEC . . . B 2 0.187 -6.693 6.718 1 0 ? C2C HEC 201 A 1 HETATM 28 C C3C HEC . . . B 2 1.575 -6.772 7.003 1 0 ? C3C HEC 201 A 1 HETATM 29 C C4C HEC . . . B 2 2.199 -6.026 5.985 1 0 ? C4C HEC 201 A 1 HETATM 30 C CMC HEC . . . B 2 -0.956 -7.317 7.512 1 0 ? CMC HEC 201 A 1 HETATM 31 C CAC HEC . . . B 2 2.194 -7.452 8.155 1 0 ? CAC HEC 201 A 1 HETATM 32 C CBC HEC . . . B 2 2.573 -8.895 8.447 1 0 ? CBC HEC 201 A 1 HETATM 33 N ND HEC . . . B 2 3.68 -5.273 3.561 1 0 ? ND HEC 201 A 1 HETATM 34 C C1D HEC . . . B 2 4.268 -5.733 4.715 1 0 ? C1D HEC 201 A 1 HETATM 35 C C2D HEC . . . B 2 5.663 -6.04 4.54 1 0 ? C2D HEC 201 A 1 HETATM 36 C C3D HEC . . . B 2 5.935 -5.76 3.254 1 0 ? C3D HEC 201 A 1 HETATM 37 C C4D HEC . . . B 2 4.722 -5.279 2.624 1 0 ? C4D HEC 201 A 1 HETATM 38 C CMD HEC . . . B 2 6.622 -6.571 5.595 1 0 ? CMD HEC 201 A 1 HETATM 39 C CAD HEC . . . B 2 7.252 -5.89 2.493 1 0 ? CAD HEC 201 A 1 HETATM 40 C CBD HEC . . . B 2 7.145 -6.765 1.254 1 0 ? CBD HEC 201 A 1 HETATM 41 C CGD HEC . . . B 2 5.749 -7.372 1.149 1 0 ? CGD HEC 201 A 1 HETATM 42 O O1D HEC . . . B 2 5.285 -7.505 0.028 1 0 ? O1D HEC 201 A 1 HETATM 43 O O2D HEC . . . B 2 5.198 -7.679 2.195 1 0 ? O2D HEC 201 A 1 HETATM 44 H HHA HEC . . . B 2 5.199 -5.126 0.497 1 0 ? HHA HEC 201 A 1 HETATM 45 H HHB HEC . . . B 2 -0.376 -2.408 0.352 1 0 ? HHB HEC 201 A 1 HETATM 46 H HHC HEC . . . B 2 -1.999 -6.061 5.238 1 0 ? HHC HEC 201 A 1 HETATM 47 H HHD HEC . . . B 2 4.135 -5.826 6.813 1 0 ? HHD HEC 201 A 1 HETATM 48 H HMA1 HEC . . . B 2 0.965 -1.115 -1.22 1 0 ? HMA1 HEC 201 A 1 HETATM 49 H HMA2 HEC . . . B 2 2.574 -0.284 -0.711 1 0 ? HMA2 HEC 201 A 1 HETATM 50 H HMA3 HEC . . . B 2 2.375 -1.55 -1.532 1 0 ? HMA3 HEC 201 A 1 HETATM 51 H HAA1 HEC . . . B 2 5.04 -2.996 -1.407 1 0 ? HAA1 HEC 201 A 1 HETATM 52 H HAA2 HEC . . . B 2 5.636 -2.364 0.135 1 0 ? HAA2 HEC 201 A 1 HETATM 53 H HBA1 HEC . . . B 2 4.168 -0.318 -0.268 1 0 ? HBA1 HEC 201 A 1 HETATM 54 H HBA2 HEC . . . B 2 3.895 -0.945 -1.906 1 0 ? HBA2 HEC 201 A 1 HETATM 55 H HMB1 HEC . . . B 2 -3.545 -1.889 2.061 1 0 ? HMB1 HEC 201 A 1 HETATM 56 H HMB2 HEC . . . B 2 -3.637 -3.171 0.836 1 0 ? HMB2 HEC 201 A 1 HETATM 57 H HMB3 HEC . . . B 2 -2.368 -1.922 0.724 1 0 ? HMB3 HEC 201 A 1 HETATM 58 H HAB HEC . . . B 2 -3.846 -3.22 4.566 1 0 ? HAB HEC 201 A 1 HETATM 59 H HBB1 HEC . . . B 2 -5.3 -5.184 2.78 1 0 ? HBB1 HEC 201 A 1 HETATM 60 H HBB2 HEC . . . B 2 -4.652 -3.69 2.069 1 0 ? HBB2 HEC 201 A 1 HETATM 61 H HBB3 HEC . . . B 2 -5.766 -3.604 3.463 1 0 ? HBB3 HEC 201 A 1 HETATM 62 H HMC1 HEC . . . B 2 -0.855 -7.529 8.571 1 0 ? HMC1 HEC 201 A 1 HETATM 63 H HMC2 HEC . . . B 2 -1.85 -7.663 6.98 1 0 ? HMC2 HEC 201 A 1 HETATM 64 H HMC3 HEC . . . B 2 -0.503 -8.289 7.316 1 0 ? HMC3 HEC 201 A 1 HETATM 65 H HAC HEC . . . B 2 3.07 -6.83 8.307 1 0 ? HAC HEC 201 A 1 HETATM 66 H HBC1 HEC . . . B 2 3.343 -9.218 7.75 1 0 ? HBC1 HEC 201 A 1 HETATM 67 H HBC2 HEC . . . B 2 1.691 -9.527 8.322 1 0 ? HBC2 HEC 201 A 1 HETATM 68 H HBC3 HEC . . . B 2 2.944 -8.977 9.469 1 0 ? HBC3 HEC 201 A 1 HETATM 69 H HMD1 HEC . . . B 2 6.056 -7.031 6.403 1 0 ? HMD1 HEC 201 A 1 HETATM 70 H HMD2 HEC . . . B 2 7.203 -5.738 5.998 1 0 ? HMD2 HEC 201 A 1 HETATM 71 H HMD3 HEC . . . B 2 7.292 -7.307 5.148 1 0 ? HMD3 HEC 201 A 1 HETATM 72 H HAD1 HEC . . . B 2 7.991 -6.319 3.168 1 0 ? HAD1 HEC 201 A 1 HETATM 73 H HAD2 HEC . . . B 2 7.586 -4.893 2.198 1 0 ? HAD2 HEC 201 A 1 HETATM 74 H HBD1 HEC . . . B 2 7.886 -7.558 1.311 1 0 ? HBD1 HEC 201 A 1 HETATM 75 H HBD2 HEC . . . B 2 7.347 -6.154 0.37 1 0 ? HBD2 HEC 201 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 3311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 75 #