data_5ZL9 # _model_server_result.job_id DwpovPiOKr6mnyWzkRPgNg _model_server_result.datetime_utc '2024-10-19 20:09:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":706}' # _entry.id 5ZL9 # _exptl.entry_id 5ZL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZL9 _cell.length_a 71.77 _cell.length_b 190.03 _cell.length_c 132.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 92 A CYS 115 1_555 A SG CYS 97 A CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 172 A CYS 195 1_555 A SG CYS 195 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5ZL9 _atom_sites.fract_transf_matrix[1][1] 0.013933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 701 1 GOL GOL . C 2 GOL A 1 702 2 GOL GOL . D 2 GOL A 1 703 3 GOL GOL . E 2 GOL A 1 704 4 GOL GOL . F 2 GOL A 1 705 5 GOL GOL . G 2 GOL A 1 706 6 GOL GOL . H 2 GOL A 1 707 7 GOL GOL . I 3 HOH A 1 801 120 HOH HOH . I 3 HOH A 2 802 51 HOH HOH . I 3 HOH A 3 803 85 HOH HOH . I 3 HOH A 4 804 4 HOH HOH . I 3 HOH A 5 805 81 HOH HOH . I 3 HOH A 6 806 117 HOH HOH . I 3 HOH A 7 807 178 HOH HOH . I 3 HOH A 8 808 160 HOH HOH . I 3 HOH A 9 809 72 HOH HOH . I 3 HOH A 10 810 182 HOH HOH . I 3 HOH A 11 811 98 HOH HOH . I 3 HOH A 12 812 143 HOH HOH . I 3 HOH A 13 813 166 HOH HOH . I 3 HOH A 14 814 2 HOH HOH . I 3 HOH A 15 815 131 HOH HOH . I 3 HOH A 16 816 62 HOH HOH . I 3 HOH A 17 817 38 HOH HOH . I 3 HOH A 18 818 88 HOH HOH . I 3 HOH A 19 819 122 HOH HOH . I 3 HOH A 20 820 93 HOH HOH . I 3 HOH A 21 821 17 HOH HOH . I 3 HOH A 22 822 63 HOH HOH . I 3 HOH A 23 823 36 HOH HOH . I 3 HOH A 24 824 44 HOH HOH . I 3 HOH A 25 825 27 HOH HOH . I 3 HOH A 26 826 45 HOH HOH . I 3 HOH A 27 827 34 HOH HOH . I 3 HOH A 28 828 46 HOH HOH . I 3 HOH A 29 829 69 HOH HOH . I 3 HOH A 30 830 60 HOH HOH . I 3 HOH A 31 831 50 HOH HOH . I 3 HOH A 32 832 58 HOH HOH . I 3 HOH A 33 833 91 HOH HOH . I 3 HOH A 34 834 119 HOH HOH . I 3 HOH A 35 835 147 HOH HOH . I 3 HOH A 36 836 179 HOH HOH . I 3 HOH A 37 837 163 HOH HOH . I 3 HOH A 38 838 11 HOH HOH . I 3 HOH A 39 839 71 HOH HOH . I 3 HOH A 40 840 95 HOH HOH . I 3 HOH A 41 841 23 HOH HOH . I 3 HOH A 42 842 53 HOH HOH . I 3 HOH A 43 843 32 HOH HOH . I 3 HOH A 44 844 21 HOH HOH . I 3 HOH A 45 845 87 HOH HOH . I 3 HOH A 46 846 75 HOH HOH . I 3 HOH A 47 847 125 HOH HOH . I 3 HOH A 48 848 78 HOH HOH . I 3 HOH A 49 849 127 HOH HOH . I 3 HOH A 50 850 77 HOH HOH . I 3 HOH A 51 851 1 HOH HOH . I 3 HOH A 52 852 39 HOH HOH . I 3 HOH A 53 853 8 HOH HOH . I 3 HOH A 54 854 118 HOH HOH . I 3 HOH A 55 855 146 HOH HOH . I 3 HOH A 56 856 18 HOH HOH . I 3 HOH A 57 857 110 HOH HOH . I 3 HOH A 58 858 12 HOH HOH . I 3 HOH A 59 859 29 HOH HOH . I 3 HOH A 60 860 124 HOH HOH . I 3 HOH A 61 861 57 HOH HOH . I 3 HOH A 62 862 171 HOH HOH . I 3 HOH A 63 863 26 HOH HOH . I 3 HOH A 64 864 25 HOH HOH . I 3 HOH A 65 865 64 HOH HOH . I 3 HOH A 66 866 123 HOH HOH . I 3 HOH A 67 867 108 HOH HOH . I 3 HOH A 68 868 128 HOH HOH . I 3 HOH A 69 869 96 HOH HOH . I 3 HOH A 70 870 19 HOH HOH . I 3 HOH A 71 871 74 HOH HOH . I 3 HOH A 72 872 184 HOH HOH . I 3 HOH A 73 873 14 HOH HOH . I 3 HOH A 74 874 16 HOH HOH . I 3 HOH A 75 875 151 HOH HOH . I 3 HOH A 76 876 15 HOH HOH . I 3 HOH A 77 877 165 HOH HOH . I 3 HOH A 78 878 76 HOH HOH . I 3 HOH A 79 879 92 HOH HOH . I 3 HOH A 80 880 86 HOH HOH . I 3 HOH A 81 881 133 HOH HOH . I 3 HOH A 82 882 136 HOH HOH . I 3 HOH A 83 883 6 HOH HOH . I 3 HOH A 84 884 31 HOH HOH . I 3 HOH A 85 885 200 HOH HOH . I 3 HOH A 86 886 140 HOH HOH . I 3 HOH A 87 887 13 HOH HOH . I 3 HOH A 88 888 10 HOH HOH . I 3 HOH A 89 889 181 HOH HOH . I 3 HOH A 90 890 176 HOH HOH . I 3 HOH A 91 891 129 HOH HOH . I 3 HOH A 92 892 48 HOH HOH . I 3 HOH A 93 893 156 HOH HOH . I 3 HOH A 94 894 56 HOH HOH . I 3 HOH A 95 895 186 HOH HOH . I 3 HOH A 96 896 89 HOH HOH . I 3 HOH A 97 897 52 HOH HOH . I 3 HOH A 98 898 20 HOH HOH . I 3 HOH A 99 899 80 HOH HOH . I 3 HOH A 100 900 41 HOH HOH . I 3 HOH A 101 901 101 HOH HOH . I 3 HOH A 102 902 112 HOH HOH . I 3 HOH A 103 903 66 HOH HOH . I 3 HOH A 104 904 3 HOH HOH . I 3 HOH A 105 905 183 HOH HOH . I 3 HOH A 106 906 7 HOH HOH . I 3 HOH A 107 907 47 HOH HOH . I 3 HOH A 108 908 73 HOH HOH . I 3 HOH A 109 909 116 HOH HOH . I 3 HOH A 110 910 174 HOH HOH . I 3 HOH A 111 911 111 HOH HOH . I 3 HOH A 112 912 139 HOH HOH . I 3 HOH A 113 913 33 HOH HOH . I 3 HOH A 114 914 83 HOH HOH . I 3 HOH A 115 915 22 HOH HOH . I 3 HOH A 116 916 137 HOH HOH . I 3 HOH A 117 917 61 HOH HOH . I 3 HOH A 118 918 84 HOH HOH . I 3 HOH A 119 919 138 HOH HOH . I 3 HOH A 120 920 67 HOH HOH . I 3 HOH A 121 921 28 HOH HOH . I 3 HOH A 122 922 152 HOH HOH . I 3 HOH A 123 923 100 HOH HOH . I 3 HOH A 124 924 30 HOH HOH . I 3 HOH A 125 925 79 HOH HOH . I 3 HOH A 126 926 148 HOH HOH . I 3 HOH A 127 927 97 HOH HOH . I 3 HOH A 128 928 109 HOH HOH . I 3 HOH A 129 929 145 HOH HOH . I 3 HOH A 130 930 135 HOH HOH . I 3 HOH A 131 931 5 HOH HOH . I 3 HOH A 132 932 154 HOH HOH . I 3 HOH A 133 933 187 HOH HOH . I 3 HOH A 134 934 115 HOH HOH . I 3 HOH A 135 935 173 HOH HOH . I 3 HOH A 136 936 121 HOH HOH . I 3 HOH A 137 937 37 HOH HOH . I 3 HOH A 138 938 65 HOH HOH . I 3 HOH A 139 939 94 HOH HOH . I 3 HOH A 140 940 55 HOH HOH . I 3 HOH A 141 941 153 HOH HOH . I 3 HOH A 142 942 40 HOH HOH . I 3 HOH A 143 943 205 HOH HOH . I 3 HOH A 144 944 193 HOH HOH . I 3 HOH A 145 945 167 HOH HOH . I 3 HOH A 146 946 54 HOH HOH . I 3 HOH A 147 947 24 HOH HOH . I 3 HOH A 148 948 169 HOH HOH . I 3 HOH A 149 949 68 HOH HOH . I 3 HOH A 150 950 196 HOH HOH . I 3 HOH A 151 951 35 HOH HOH . I 3 HOH A 152 952 202 HOH HOH . I 3 HOH A 153 953 49 HOH HOH . I 3 HOH A 154 954 82 HOH HOH . I 3 HOH A 155 955 42 HOH HOH . I 3 HOH A 156 956 43 HOH HOH . I 3 HOH A 157 957 130 HOH HOH . I 3 HOH A 158 958 105 HOH HOH . I 3 HOH A 159 959 150 HOH HOH . I 3 HOH A 160 960 203 HOH HOH . I 3 HOH A 161 961 103 HOH HOH . I 3 HOH A 162 962 172 HOH HOH . I 3 HOH A 163 963 114 HOH HOH . I 3 HOH A 164 964 180 HOH HOH . I 3 HOH A 165 965 170 HOH HOH . I 3 HOH A 166 966 161 HOH HOH . I 3 HOH A 167 967 9 HOH HOH . I 3 HOH A 168 968 102 HOH HOH . I 3 HOH A 169 969 99 HOH HOH . I 3 HOH A 170 970 204 HOH HOH . I 3 HOH A 171 971 168 HOH HOH . I 3 HOH A 172 972 59 HOH HOH . I 3 HOH A 173 973 158 HOH HOH . I 3 HOH A 174 974 177 HOH HOH . I 3 HOH A 175 975 144 HOH HOH . I 3 HOH A 176 976 198 HOH HOH . I 3 HOH A 177 977 190 HOH HOH . I 3 HOH A 178 978 194 HOH HOH . I 3 HOH A 179 979 162 HOH HOH . I 3 HOH A 180 980 104 HOH HOH . I 3 HOH A 181 981 157 HOH HOH . I 3 HOH A 182 982 159 HOH HOH . I 3 HOH A 183 983 132 HOH HOH . I 3 HOH A 184 984 126 HOH HOH . I 3 HOH A 185 985 188 HOH HOH . I 3 HOH A 186 986 107 HOH HOH . I 3 HOH A 187 987 195 HOH HOH . I 3 HOH A 188 988 106 HOH HOH . I 3 HOH A 189 989 197 HOH HOH . I 3 HOH A 190 990 164 HOH HOH . I 3 HOH A 191 991 192 HOH HOH . I 3 HOH A 192 992 155 HOH HOH . I 3 HOH A 193 993 175 HOH HOH . I 3 HOH A 194 994 134 HOH HOH . I 3 HOH A 195 995 90 HOH HOH . I 3 HOH A 196 996 70 HOH HOH . I 3 HOH A 197 997 201 HOH HOH . I 3 HOH A 198 998 113 HOH HOH . I 3 HOH A 199 999 142 HOH HOH . I 3 HOH A 200 1000 185 HOH HOH . I 3 HOH A 201 1001 149 HOH HOH . I 3 HOH A 202 1002 191 HOH HOH . I 3 HOH A 203 1003 189 HOH HOH . I 3 HOH A 204 1004 199 HOH HOH . I 3 HOH A 205 1005 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 -18.845 -24.713 2.034 1 43.16 ? C1 GOL 706 A 1 HETATM 2 O O1 GOL . . . G 2 -19.015 -25.455 3.206 1 48.87 ? O1 GOL 706 A 1 HETATM 3 C C2 GOL . . . G 2 -17.491 -25.066 1.373 1 47.08 ? C2 GOL 706 A 1 HETATM 4 O O2 GOL . . . G 2 -16.652 -23.952 1.329 1 48.73 ? O2 GOL 706 A 1 HETATM 5 C C3 GOL . . . G 2 -16.898 -26.261 2.202 1 42.25 ? C3 GOL 706 A 1 HETATM 6 O O3 GOL . . . G 2 -15.916 -26.923 1.408 1 43.08 ? O3 GOL 706 A 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #