data_5ZLE
#
_model_server_result.job_id            8vUp7D8NJIGdcbK305RUUA 
_model_server_result.datetime_utc      '2025-02-05 16:59:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zle 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5ZLE 
#
_exptl.entry_id    5ZLE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.45 
_cell.angle_gamma         90 
_cell.entry_id            5ZLE 
_cell.length_a            64.45 
_cell.length_b            115.94 
_cell.length_c            48.43 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZLE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 41.378352 0 42.581263 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 50 A HIS 50 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 C FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc3 A NE2 HIS 120 A HIS 120 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc4 A NE2 HIS 159 A HIS 159 1_555 C FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     5ZLE 
_atom_sites.fract_transf_matrix[1][1]    0.015516 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008407 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023484 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 401 401 HEM HEM . 
C 2 HEM A 1 402 402 HEM HEM . 
D 3 HOH A 1 501 505 HOH HOH . 
D 3 HOH A 2 502 501 HOH HOH . 
D 3 HOH A 3 503 503 HOH HOH . 
D 3 HOH A 4 504 502 HOH HOH . 
D 3 HOH A 5 505 504 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 12.635 21.941 13.581 1 21.84 ? CHA HEM 401 A 1 
HETATM 2 C CHB HEM . . . B 2 12.358 26.804 13.276 1 10.65 ? CHB HEM 401 A 1 
HETATM 3 C CHC HEM . . . B 2 17.148 26.943 12.21 1 12.42 ? CHC HEM 401 A 1 
HETATM 4 C CHD HEM . . . B 2 17.415 22.104 12.831 1 18.69 ? CHD HEM 401 A 1 
HETATM 5 C C1A HEM . . . B 2 12.189 23.239 13.55 1 19.29 ? C1A HEM 401 A 1 
HETATM 6 C C2A HEM . . . B 2 10.829 23.564 13.669 1 15.11 ? C2A HEM 401 A 1 
HETATM 7 C C3A HEM . . . B 2 10.732 24.921 13.589 1 15.06 ? C3A HEM 401 A 1 
HETATM 8 C C4A HEM . . . B 2 12.041 25.45 13.422 1 18.33 ? C4A HEM 401 A 1 
HETATM 9 C CMA HEM . . . B 2 9.464 25.721 13.694 1 19.96 ? CMA HEM 401 A 1 
HETATM 10 C CAA HEM . . . B 2 9.73 22.547 13.883 1 16.17 ? CAA HEM 401 A 1 
HETATM 11 C CBA HEM . . . B 2 9.36 21.843 12.58 1 21.95 ? CBA HEM 401 A 1 
HETATM 12 C CGA HEM . . . B 2 8.658 20.539 12.837 1 32.66 ? CGA HEM 401 A 1 
HETATM 13 O O1A HEM . . . B 2 8.21 20.29 13.972 1 38.43 ? O1A HEM 401 A 1 
HETATM 14 O O2A HEM . . . B 2 8.524 19.701 11.913 1 40.15 ? O2A HEM 401 A 1 
HETATM 15 C C1B HEM . . . B 2 13.661 27.225 12.963 1 11.93 ? C1B HEM 401 A 1 
HETATM 16 C C2B HEM . . . B 2 13.988 28.604 12.783 1 13.89 ? C2B HEM 401 A 1 
HETATM 17 C C3B HEM . . . B 2 15.322 28.628 12.486 1 15.95 ? C3B HEM 401 A 1 
HETATM 18 C C4B HEM . . . B 2 15.814 27.247 12.477 1 13.95 ? C4B HEM 401 A 1 
HETATM 19 C CMB HEM . . . B 2 13.089 29.829 12.897 1 11.17 ? CMB HEM 401 A 1 
HETATM 20 C CAB HEM . . . B 2 16.157 29.796 12.217 1 30.62 ? CAB HEM 401 A 1 
HETATM 21 C CBB HEM . . . B 2 17.15 30.062 13.054 1 35.7 ? CBB HEM 401 A 1 
HETATM 22 C C1C HEM . . . B 2 17.63 25.645 12.267 1 14.72 ? C1C HEM 401 A 1 
HETATM 23 C C2C HEM . . . B 2 18.936 25.263 11.934 1 19.24 ? C2C HEM 401 A 1 
HETATM 24 C C3C HEM . . . B 2 19.007 23.882 12.101 1 25.15 ? C3C HEM 401 A 1 
HETATM 25 C C4C HEM . . . B 2 17.731 23.426 12.554 1 27.64 ? C4C HEM 401 A 1 
HETATM 26 C CMC HEM . . . B 2 20.027 26.207 11.484 1 20.93 ? CMC HEM 401 A 1 
HETATM 27 C CAC HEM . . . B 2 20.182 23.029 11.897 1 25.96 ? CAC HEM 401 A 1 
HETATM 28 C CBC HEM . . . B 2 20.095 21.978 11.091 1 32.09 ? CBC HEM 401 A 1 
HETATM 29 C C1D HEM . . . B 2 16.103 21.708 13.108 1 17.36 ? C1D HEM 401 A 1 
HETATM 30 C C2D HEM . . . B 2 15.742 20.298 13.355 1 20.18 ? C2D HEM 401 A 1 
HETATM 31 C C3D HEM . . . B 2 14.416 20.269 13.558 1 16.1 ? C3D HEM 401 A 1 
HETATM 32 C C4D HEM . . . B 2 13.976 21.653 13.445 1 17.14 ? C4D HEM 401 A 1 
HETATM 33 C CMD HEM . . . B 2 16.657 19.096 13.385 1 18.21 ? CMD HEM 401 A 1 
HETATM 34 C CAD HEM . . . B 2 13.551 19.058 13.835 1 17.37 ? CAD HEM 401 A 1 
HETATM 35 C CBD HEM . . . B 2 13.58 18.576 15.289 1 14.04 ? CBD HEM 401 A 1 
HETATM 36 C CGD HEM . . . B 2 12.682 19.466 16.103 1 23.7 ? CGD HEM 401 A 1 
HETATM 37 O O1D HEM . . . B 2 11.438 19.452 15.889 1 28.97 ? O1D HEM 401 A 1 
HETATM 38 O O2D HEM . . . B 2 13.201 20.222 16.974 1 21 ? O2D HEM 401 A 1 
HETATM 39 N NA HEM . . . B 2 12.914 24.386 13.32 1 16.94 ? NA HEM 401 A 1 
HETATM 40 N NB HEM . . . B 2 14.77 26.452 12.78 1 14.98 ? NB HEM 401 A 1 
HETATM 41 N NC HEM . . . B 2 16.891 24.525 12.564 1 13.69 ? NC HEM 401 A 1 
HETATM 42 N ND HEM . . . B 2 15.005 22.484 13.179 1 21.11 ? ND HEM 401 A 1 
HETATM 43 FE FE HEM . . . B 2 14.862 24.351 12.958 1 18.86 ? FE HEM 401 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#