data_5ZLF # _model_server_result.job_id LrZkB4w69KIkFNM581VFBg _model_server_result.datetime_utc '2024-11-23 21:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zlf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 5ZLF # _exptl.entry_id 5ZLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 448.3 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-(3-DIBENZOFURAN-4-YL-PHENYL)-1-HYDROXY-1-PHOSPHONO-ETHYL]-PHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.08 _cell.angle_gamma 90 _cell.entry_id 5ZLF _cell.length_a 149.344 _cell.length_b 46.645 _cell.length_c 215.741 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H 1 1 C,D,G,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 84 A ASP 84 1_555 F MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 E OAF B29 . A B29 901 1_555 F MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc3 G MG MG . D MG 401 1_555 J O HOH . D HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? # _chem_comp.formula 'C20 H18 O8 P2' _chem_comp.formula_weight 448.3 _chem_comp.id B29 _chem_comp.mon_nstd_flag . _chem_comp.name '[2-(3-DIBENZOFURAN-4-YL-PHENYL)-1-HYDROXY-1-PHOSPHONO-ETHYL]-PHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[2-(3-DIBENZO[B,D]FURAN-4-YLPHENYL)-1-HYDROXYETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAY CAX B29 doub 70 n y CAY CAP B29 sing 71 n y CAY CAZ B29 sing 72 n y CAP CAI B29 doub 73 n y CAP HAP B29 sing 74 n n CAI CAH B29 sing 75 n y CAI HAI B29 sing 76 n n CAH CAO B29 doub 77 n y CAH HAH B29 sing 78 n n CAO CAX B29 sing 79 n y CAO HAO B29 sing 80 n n CAX OAT B29 sing 81 n y OAT CBA B29 sing 82 n y CBA CAZ B29 doub 83 n y CBA CAW B29 sing 84 n y CAZ CAQ B29 sing 85 n y CAQ CAK B29 doub 86 n y CAQ HAQ B29 sing 87 n n CAK CAN B29 sing 88 n y CAK HAK B29 sing 89 n n CAN CAW B29 doub 90 n y CAN HAN B29 sing 91 n n CAW CAV B29 sing 92 n y CAV CAM B29 doub 93 n y CAV CAR B29 sing 94 n y CAR CAU B29 doub 95 n y CAR HAR B29 sing 96 n n CAM CAJ B29 sing 97 n y CAM HAM B29 sing 98 n n CAJ CAL B29 doub 99 n y CAJ HAJ B29 sing 100 n n CAL CAU B29 sing 101 n y CAL HAL B29 sing 102 n n CAU CAS B29 sing 103 n n CAS CBB B29 sing 104 n n CAS HAS1 B29 sing 105 n n CAS HAS2 B29 sing 106 n n CBB PBC B29 sing 107 n n CBB PBD B29 sing 108 n n CBB OAC B29 sing 109 n n PBC OAD B29 doub 110 n n PBC OAA B29 sing 111 n n PBC OAE B29 sing 112 n n OAE HOAE B29 sing 113 n n OAA HOAA B29 sing 114 n n PBD OAF B29 doub 115 n n PBD OAG B29 sing 116 n n PBD OAB B29 sing 117 n n OAG HOAG B29 sing 118 n n OAB HOAB B29 sing 119 n n OAC HOAC B29 sing 120 n n # _atom_sites.entry_id 5ZLF _atom_sites.fract_transf_matrix[1][1] 0.006696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001311 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B29 A 1 901 901 B29 B29 . F 3 MG A 1 902 902 MG MG . G 3 MG D 1 401 902 MG MG . H 4 HOH B 1 401 3 HOH HOH . H 4 HOH B 2 402 2 HOH HOH . I 4 HOH C 1 401 4 HOH HOH . I 4 HOH C 2 402 7 HOH HOH . I 4 HOH C 3 403 5 HOH HOH . J 4 HOH D 1 501 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAY B29 . . . E 2 64.841 -4.439 24.973 1 132.3 ? CAY B29 901 A 1 HETATM 2 C CAP B29 . . . E 2 66.011 -5.155 25.274 1 132.36 ? CAP B29 901 A 1 HETATM 3 C CAI B29 . . . E 2 66.338 -5.432 26.593 1 123.78 ? CAI B29 901 A 1 HETATM 4 C CAH B29 . . . E 2 65.502 -5.002 27.616 1 119.55 ? CAH B29 901 A 1 HETATM 5 C CAO B29 . . . E 2 64.346 -4.294 27.318 1 124.97 ? CAO B29 901 A 1 HETATM 6 C CAX B29 . . . E 2 64.016 -4.012 25.982 1 134.57 ? CAX B29 901 A 1 HETATM 7 O OAT B29 . . . E 2 62.946 -3.34 25.402 1 133.95 ? OAT B29 901 A 1 HETATM 8 C CBA B29 . . . E 2 63.115 -3.351 24.023 1 125.96 ? CBA B29 901 A 1 HETATM 9 C CAZ B29 . . . E 2 64.283 -4.028 23.759 1 127.44 ? CAZ B29 901 A 1 HETATM 10 C CAQ B29 . . . E 2 64.714 -4.197 22.437 1 130.11 ? CAQ B29 901 A 1 HETATM 11 C CAK B29 . . . E 2 63.97 -3.689 21.386 1 131.83 ? CAK B29 901 A 1 HETATM 12 C CAN B29 . . . E 2 62.792 -3.006 21.651 1 131.56 ? CAN B29 901 A 1 HETATM 13 C CAW B29 . . . E 2 62.349 -2.838 22.954 1 125.3 ? CAW B29 901 A 1 HETATM 14 C CAV B29 . . . E 2 61.171 -2.118 23.114 1 125.8 ? CAV B29 901 A 1 HETATM 15 C CAR B29 . . . E 2 60.954 -1.043 22.265 1 126.07 ? CAR B29 901 A 1 HETATM 16 C CAM B29 . . . E 2 60.229 -2.427 24.082 1 130.09 ? CAM B29 901 A 1 HETATM 17 C CAJ B29 . . . E 2 59.079 -1.656 24.187 1 125.97 ? CAJ B29 901 A 1 HETATM 18 C CAL B29 . . . E 2 58.869 -0.581 23.333 1 125.7 ? CAL B29 901 A 1 HETATM 19 C CAU B29 . . . E 2 59.807 -0.273 22.358 1 126.61 ? CAU B29 901 A 1 HETATM 20 C CAS B29 . . . E 2 59.625 0.908 21.395 1 124.21 ? CAS B29 901 A 1 HETATM 21 C CBB B29 . . . E 2 58.277 0.972 20.665 1 122.65 ? CBB B29 901 A 1 HETATM 22 P PBC B29 . . . E 2 58.351 2.35 19.412 1 108.46 ? PBC B29 901 A 1 HETATM 23 O OAD B29 . . . E 2 59.292 1.968 18.294 1 112.94 ? OAD B29 901 A 1 HETATM 24 O OAE B29 . . . E 2 58.842 3.619 20.066 1 106.05 ? OAE B29 901 A 1 HETATM 25 O OAA B29 . . . E 2 56.972 2.583 18.84 1 107.5 ? OAA B29 901 A 1 HETATM 26 P PBD B29 . . . E 2 57.877 -0.599 19.744 1 117.16 ? PBD B29 901 A 1 HETATM 27 O OAF B29 . . . E 2 58.973 -0.899 18.75 1 108.88 ? OAF B29 901 A 1 HETATM 28 O OAG B29 . . . E 2 57.725 -1.761 20.696 1 120.08 ? OAG B29 901 A 1 HETATM 29 O OAB B29 . . . E 2 56.576 -0.404 19 1 108.95 ? OAB B29 901 A 1 HETATM 30 O OAC B29 . . . E 2 57.255 1.259 21.58 1 132.53 ? OAC B29 901 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #