data_5ZLH
#
_model_server_result.job_id            PLNgN-iFXLBUxu0sXZFA_A 
_model_server_result.datetime_utc      '2024-11-15 00:16:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zlh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":500}' 
#
_entry.id    5ZLH 
#
_exptl.entry_id    5ZLH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              615.58 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE PROTOPORPHYRIN IX' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZLH 
_cell.length_a            104.76 
_cell.length_b            155.32 
_cell.length_c            208.98 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZLH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 400 A CYS 400 1_555 E MN MNH . A MNH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc2 B SG CYS 400 B CYS 400 1_555 F MN MNH . B MNH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc3 C SG CYS 400 C CYS 400 1_555 G MN MNH . C MNH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc4 D SG CYS 400 D CYS 400 1_555 H MN MNH . D MNH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
#
_chem_comp.formula           'C34 H32 Mn N4 O4 4' 
_chem_comp.formula_weight    615.58 
_chem_comp.id                MNH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE PROTOPORPHYRIN IX' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
MN NA MNH sing 235 n n 
MN NB MNH sing 236 n n 
MN NC MNH sing 237 n n 
MN ND MNH sing 238 n n 
CHA C1A MNH doub 239 n y 
CHA C4D MNH sing 240 n y 
CHA HHA MNH sing 241 n n 
CHB C4A MNH doub 242 n y 
CHB C1B MNH sing 243 n y 
CHB HHB MNH sing 244 n n 
CHC C4B MNH doub 245 n y 
CHC C1C MNH sing 246 n y 
CHC HHC MNH sing 247 n n 
CHD C4C MNH sing 248 n y 
CHD C1D MNH doub 249 n y 
CHD HHD MNH sing 250 n n 
NA C1A MNH sing 251 n y 
NA C4A MNH sing 252 n y 
C1A C2A MNH sing 253 n y 
C2A C3A MNH doub 254 n y 
C2A CAA MNH sing 255 n n 
C3A C4A MNH sing 256 n y 
C3A CMA MNH sing 257 n n 
CMA HMA1 MNH sing 258 n n 
CMA HMA2 MNH sing 259 n n 
CMA HMA3 MNH sing 260 n n 
CAA CBA MNH sing 261 n n 
CAA HAA1 MNH sing 262 n n 
CAA HAA2 MNH sing 263 n n 
CBA CGA MNH sing 264 n n 
CBA HBA1 MNH sing 265 n n 
CBA HBA2 MNH sing 266 n n 
CGA O1A MNH sing 267 n n 
CGA O2A MNH doub 268 n n 
O1A H1A MNH sing 269 n n 
NB C1B MNH doub 270 n y 
NB C4B MNH sing 271 n y 
C1B C2B MNH sing 272 n n 
C2B C3B MNH doub 273 n n 
C2B CMB MNH sing 274 n n 
C3B C4B MNH sing 275 n n 
C3B CAB MNH sing 276 n n 
CMB HMB1 MNH sing 277 n n 
CMB HMB2 MNH sing 278 n n 
CMB HMB3 MNH sing 279 n n 
CAB CBB MNH doub 280 n n 
CAB HAB MNH sing 281 n n 
CBB HBB1 MNH sing 282 n n 
CBB HBB2 MNH sing 283 n n 
NC C1C MNH sing 284 n y 
NC C4C MNH sing 285 n y 
C1C C2C MNH doub 286 n y 
C2C C3C MNH sing 287 n y 
C2C CMC MNH sing 288 n n 
C3C C4C MNH doub 289 n y 
C3C CAC MNH sing 290 n n 
CMC HMC1 MNH sing 291 n n 
CMC HMC2 MNH sing 292 n n 
CMC HMC3 MNH sing 293 n n 
CAC CBC MNH doub 294 n n 
CAC HAC MNH sing 295 n n 
CBC HBC1 MNH sing 296 n n 
CBC HBC2 MNH sing 297 n n 
ND C1D MNH sing 298 n y 
ND C4D MNH doub 299 n y 
C1D C2D MNH sing 300 n n 
C2D C3D MNH doub 301 n n 
C2D CMD MNH sing 302 n n 
C3D C4D MNH sing 303 n n 
C3D CAD MNH sing 304 n n 
CMD HMD1 MNH sing 305 n n 
CMD HMD2 MNH sing 306 n n 
CMD HMD3 MNH sing 307 n n 
CAD CBD MNH sing 308 n n 
CAD HAD1 MNH sing 309 n n 
CAD HAD2 MNH sing 310 n n 
CBD CGD MNH sing 311 n n 
CBD HBD1 MNH sing 312 n n 
CBD HBD2 MNH sing 313 n n 
CGD O1D MNH doub 314 n n 
CGD O2D MNH sing 315 n n 
O2D H2D MNH sing 316 n n 
#
_atom_sites.entry_id                     5ZLH 
_atom_sites.fract_transf_matrix[1][1]    0.009546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006438 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MNH A 1 500 500 MNH MNH . 
F 2 MNH B 1 500 500 MNH MNH . 
G 2 MNH C 1 500 500 MNH MNH . 
H 2 MNH D 1 500 500 MNH MNH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 MN MN MNH . . . E 2 30.824 32.685 4.649 1 26.76 ? MN MNH 500 A 1 
HETATM 2 C CHA MNH . . . E 2 27.413 31.958 4.354 1 26.74 ? CHA MNH 500 A 1 
HETATM 3 C CHB MNH . . . E 2 31.674 29.931 2.809 1 19.08 ? CHB MNH 500 A 1 
HETATM 4 C CHC MNH . . . E 2 34.1 33.823 4.379 1 11.9 ? CHC MNH 500 A 1 
HETATM 5 C CHD MNH . . . E 2 30.146 35.129 7.078 1 15.64 ? CHD MNH 500 A 1 
HETATM 6 N NA MNH . . . E 2 29.707 31.178 3.722 1 18.63 ? NA MNH 500 A 1 
HETATM 7 C C1A MNH . . . E 2 28.379 31.049 3.715 1 18.83 ? C1A MNH 500 A 1 
HETATM 8 C C2A MNH . . . E 2 28.034 29.908 2.993 1 17.2 ? C2A MNH 500 A 1 
HETATM 9 C C3A MNH . . . E 2 29.234 29.35 2.566 1 13.99 ? C3A MNH 500 A 1 
HETATM 10 C C4A MNH . . . E 2 30.243 30.176 3.04 1 18.25 ? C4A MNH 500 A 1 
HETATM 11 C CMA MNH . . . E 2 29.418 28.104 1.739 1 15.57 ? CMA MNH 500 A 1 
HETATM 12 C CAA MNH . . . E 2 26.643 29.369 2.728 1 19.05 ? CAA MNH 500 A 1 
HETATM 13 C CBA MNH . . . E 2 26.399 28.165 3.641 1 21.86 ? CBA MNH 500 A 1 
HETATM 14 C CGA MNH . . . E 2 25.141 27.426 3.246 1 21.43 ? CGA MNH 500 A 1 
HETATM 15 O O1A MNH . . . E 2 24.81 26.415 3.851 1 27.03 ? O1A MNH 500 A 1 
HETATM 16 O O2A MNH . . . E 2 24.394 27.875 2.238 1 27.64 ? O2A MNH 500 A 1 
HETATM 17 N NB MNH . . . E 2 32.568 31.939 3.74 1 18.57 ? NB MNH 500 A 1 
HETATM 18 C C1B MNH . . . E 2 32.81 30.853 3.019 1 19.95 ? C1B MNH 500 A 1 
HETATM 19 C C2B MNH . . . E 2 34.081 30.656 2.542 1 17.9 ? C2B MNH 500 A 1 
HETATM 20 C C3B MNH . . . E 2 34.719 31.803 3.024 1 12.76 ? C3B MNH 500 A 1 
HETATM 21 C C4B MNH . . . E 2 33.764 32.546 3.736 1 13.56 ? C4B MNH 500 A 1 
HETATM 22 C CMB MNH . . . E 2 34.603 29.504 1.721 1 19.56 ? CMB MNH 500 A 1 
HETATM 23 C CAB MNH . . . E 2 36.131 32.232 2.871 1 7.4 ? CAB MNH 500 A 1 
HETATM 24 C CBB MNH . . . E 2 37.174 31.472 2.596 1 12.79 ? CBB MNH 500 A 1 
HETATM 25 N NC MNH . . . E 2 31.939 34.215 5.579 1 17.52 ? NC MNH 500 A 1 
HETATM 26 C C1C MNH . . . E 2 33.218 34.508 5.333 1 12.29 ? C1C MNH 500 A 1 
HETATM 27 C C2C MNH . . . E 2 33.621 35.577 6.119 1 12.16 ? C2C MNH 500 A 1 
HETATM 28 C C3C MNH . . . E 2 32.514 35.942 6.875 1 18.29 ? C3C MNH 500 A 1 
HETATM 29 C C4C MNH . . . E 2 31.499 35.072 6.507 1 19.56 ? C4C MNH 500 A 1 
HETATM 30 C CMC MNH . . . E 2 34.997 36.19 6.122 1 9.46 ? CMC MNH 500 A 1 
HETATM 31 C CAC MNH . . . E 2 32.406 37.029 7.882 1 22.82 ? CAC MNH 500 A 1 
HETATM 32 C CBC MNH . . . E 2 32.921 38.244 7.812 1 20.05 ? CBC MNH 500 A 1 
HETATM 33 N ND MNH . . . E 2 29.075 33.425 5.559 1 27.21 ? ND MNH 500 A 1 
HETATM 34 C C1D MNH . . . E 2 29.02 34.386 6.493 1 21.95 ? C1D MNH 500 A 1 
HETATM 35 C C2D MNH . . . E 2 27.698 34.59 6.842 1 26.61 ? C2D MNH 500 A 1 
HETATM 36 C C3D MNH . . . E 2 26.927 33.723 6.094 1 34.79 ? C3D MNH 500 A 1 
HETATM 37 C C4D MNH . . . E 2 27.823 33.007 5.306 1 28.31 ? C4D MNH 500 A 1 
HETATM 38 C CMD MNH . . . E 2 27.21 35.591 7.853 1 35.09 ? CMD MNH 500 A 1 
HETATM 39 C CAD MNH . . . E 2 25.425 33.59 6.143 1 42.4 ? CAD MNH 500 A 1 
HETATM 40 C CBD MNH . . . E 2 24.773 34.111 4.87 1 32.55 ? CBD MNH 500 A 1 
HETATM 41 C CGD MNH . . . E 2 23.282 33.921 5.002 1 42.28 ? CGD MNH 500 A 1 
HETATM 42 O O1D MNH . . . E 2 22.448 34.912 4.694 1 58.4 ? O1D MNH 500 A 1 
HETATM 43 O O2D MNH . . . E 2 22.843 32.856 5.403 1 36.94 ? O2D MNH 500 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#