data_5ZM5 # _model_server_result.job_id iu1zDh2Logcdjf5bJvjJxg _model_server_result.datetime_utc '2024-11-24 01:21:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5ZM5 # _exptl.entry_id 5ZM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZM5 _cell.length_a 135.803 _cell.length_b 135.803 _cell.length_c 91.154 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -60.769333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 23 A LYS 555 1_555 A N CAS 24 A CAS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C CAS 24 A CAS 556 1_555 A N ILE 25 A ILE 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C CYS 178 A CYS 710 1_555 A N CAS 179 A CAS 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 A C CAS 179 A CAS 711 1_555 A N VAL 180 A VAL 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C PRO 213 A PRO 745 1_555 A N CAS 214 A CAS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C CAS 214 A CAS 746 1_555 A N GLY 215 A GLY 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C LEU 236 A LEU 768 1_555 A N CAS 237 A CAS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C CAS 237 A CAS 769 1_555 A N ALA 238 A ALA 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C GLU 245 A GLU 777 1_555 A N CAS 246 A CAS 778 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C CAS 246 A CAS 778 1_555 A N LEU 247 A LEU 779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 91 n n C1 C10 CLR sing 92 n n C1 H11 CLR sing 93 n n C1 H12 CLR sing 94 n n C2 C3 CLR sing 95 n n C2 H21 CLR sing 96 n n C2 H22 CLR sing 97 n n C3 C4 CLR sing 98 n n C3 O1 CLR sing 99 n n C3 H3 CLR sing 100 n n C4 C5 CLR sing 101 n n C4 H41 CLR sing 102 n n C4 H42 CLR sing 103 n n C5 C6 CLR doub 104 n n C5 C10 CLR sing 105 n n C6 C7 CLR sing 106 n n C6 H6 CLR sing 107 n n C7 C8 CLR sing 108 n n C7 H71 CLR sing 109 n n C7 H72 CLR sing 110 n n C8 C9 CLR sing 111 n n C8 C14 CLR sing 112 n n C8 H8 CLR sing 113 n n C9 C10 CLR sing 114 n n C9 C11 CLR sing 115 n n C9 H9 CLR sing 116 n n C10 C19 CLR sing 117 n n C11 C12 CLR sing 118 n n C11 H111 CLR sing 119 n n C11 H112 CLR sing 120 n n C12 C13 CLR sing 121 n n C12 H121 CLR sing 122 n n C12 H122 CLR sing 123 n n C13 C14 CLR sing 124 n n C13 C17 CLR sing 125 n n C13 C18 CLR sing 126 n n C14 C15 CLR sing 127 n n C14 H14 CLR sing 128 n n C15 C16 CLR sing 129 n n C15 H151 CLR sing 130 n n C15 H152 CLR sing 131 n n C16 C17 CLR sing 132 n n C16 H161 CLR sing 133 n n C16 H162 CLR sing 134 n n C17 C20 CLR sing 135 n n C17 H17 CLR sing 136 n n C18 H181 CLR sing 137 n n C18 H182 CLR sing 138 n n C18 H183 CLR sing 139 n n C19 H191 CLR sing 140 n n C19 H192 CLR sing 141 n n C19 H193 CLR sing 142 n n C20 C21 CLR sing 143 n n C20 C22 CLR sing 144 n n C20 H20 CLR sing 145 n n C21 H211 CLR sing 146 n n C21 H212 CLR sing 147 n n C21 H213 CLR sing 148 n n C22 C23 CLR sing 149 n n C22 H221 CLR sing 150 n n C22 H222 CLR sing 151 n n C23 C24 CLR sing 152 n n C23 H231 CLR sing 153 n n C23 H232 CLR sing 154 n n C24 C25 CLR sing 155 n n C24 H241 CLR sing 156 n n C24 H242 CLR sing 157 n n C25 C26 CLR sing 158 n n C25 C27 CLR sing 159 n n C25 H25 CLR sing 160 n n C26 H261 CLR sing 161 n n C26 H262 CLR sing 162 n n C26 H263 CLR sing 163 n n C27 H271 CLR sing 164 n n C27 H272 CLR sing 165 n n C27 H273 CLR sing 166 n n O1 H1 CLR sing 167 n n # _atom_sites.entry_id 5ZM5 _atom_sites.fract_transf_matrix[1][1] 0.007364 _atom_sites.fract_transf_matrix[1][2] 0.004251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1001 1 CLR CLR . C 3 HOH A 1 1101 2 HOH HOH . C 3 HOH A 2 1102 117 HOH HOH . C 3 HOH A 3 1103 60 HOH HOH . C 3 HOH A 4 1104 99 HOH HOH . C 3 HOH A 5 1105 47 HOH HOH . C 3 HOH A 6 1106 19 HOH HOH . C 3 HOH A 7 1107 135 HOH HOH . C 3 HOH A 8 1108 132 HOH HOH . C 3 HOH A 9 1109 40 HOH HOH . C 3 HOH A 10 1110 62 HOH HOH . C 3 HOH A 11 1111 6 HOH HOH . C 3 HOH A 12 1112 16 HOH HOH . C 3 HOH A 13 1113 55 HOH HOH . C 3 HOH A 14 1114 11 HOH HOH . C 3 HOH A 15 1115 35 HOH HOH . C 3 HOH A 16 1116 34 HOH HOH . C 3 HOH A 17 1117 39 HOH HOH . C 3 HOH A 18 1118 12 HOH HOH . C 3 HOH A 19 1119 31 HOH HOH . C 3 HOH A 20 1120 70 HOH HOH . C 3 HOH A 21 1121 30 HOH HOH . C 3 HOH A 22 1122 17 HOH HOH . C 3 HOH A 23 1123 71 HOH HOH . C 3 HOH A 24 1124 48 HOH HOH . C 3 HOH A 25 1125 89 HOH HOH . C 3 HOH A 26 1126 103 HOH HOH . C 3 HOH A 27 1127 29 HOH HOH . C 3 HOH A 28 1128 108 HOH HOH . C 3 HOH A 29 1129 83 HOH HOH . C 3 HOH A 30 1130 4 HOH HOH . C 3 HOH A 31 1131 25 HOH HOH . C 3 HOH A 32 1132 37 HOH HOH . C 3 HOH A 33 1133 86 HOH HOH . C 3 HOH A 34 1134 15 HOH HOH . C 3 HOH A 35 1135 90 HOH HOH . C 3 HOH A 36 1136 72 HOH HOH . C 3 HOH A 37 1137 44 HOH HOH . C 3 HOH A 38 1138 76 HOH HOH . C 3 HOH A 39 1139 143 HOH HOH . C 3 HOH A 40 1140 45 HOH HOH . C 3 HOH A 41 1141 68 HOH HOH . C 3 HOH A 42 1142 74 HOH HOH . C 3 HOH A 43 1143 20 HOH HOH . C 3 HOH A 44 1144 10 HOH HOH . C 3 HOH A 45 1145 65 HOH HOH . C 3 HOH A 46 1146 61 HOH HOH . C 3 HOH A 47 1147 21 HOH HOH . C 3 HOH A 48 1148 79 HOH HOH . C 3 HOH A 49 1149 23 HOH HOH . C 3 HOH A 50 1150 56 HOH HOH . C 3 HOH A 51 1151 3 HOH HOH . C 3 HOH A 52 1152 93 HOH HOH . C 3 HOH A 53 1153 9 HOH HOH . C 3 HOH A 54 1154 66 HOH HOH . C 3 HOH A 55 1155 7 HOH HOH . C 3 HOH A 56 1156 57 HOH HOH . C 3 HOH A 57 1157 42 HOH HOH . C 3 HOH A 58 1158 18 HOH HOH . C 3 HOH A 59 1159 110 HOH HOH . C 3 HOH A 60 1160 73 HOH HOH . C 3 HOH A 61 1161 78 HOH HOH . C 3 HOH A 62 1162 91 HOH HOH . C 3 HOH A 63 1163 33 HOH HOH . C 3 HOH A 64 1164 58 HOH HOH . C 3 HOH A 65 1165 32 HOH HOH . C 3 HOH A 66 1166 24 HOH HOH . C 3 HOH A 67 1167 67 HOH HOH . C 3 HOH A 68 1168 5 HOH HOH . C 3 HOH A 69 1169 53 HOH HOH . C 3 HOH A 70 1170 88 HOH HOH . C 3 HOH A 71 1171 112 HOH HOH . C 3 HOH A 72 1172 13 HOH HOH . C 3 HOH A 73 1173 8 HOH HOH . C 3 HOH A 74 1174 96 HOH HOH . C 3 HOH A 75 1175 142 HOH HOH . C 3 HOH A 76 1176 36 HOH HOH . C 3 HOH A 77 1177 84 HOH HOH . C 3 HOH A 78 1178 153 HOH HOH . C 3 HOH A 79 1179 106 HOH HOH . C 3 HOH A 80 1180 38 HOH HOH . C 3 HOH A 81 1181 14 HOH HOH . C 3 HOH A 82 1182 136 HOH HOH . C 3 HOH A 83 1183 122 HOH HOH . C 3 HOH A 84 1184 120 HOH HOH . C 3 HOH A 85 1185 140 HOH HOH . C 3 HOH A 86 1186 51 HOH HOH . C 3 HOH A 87 1187 101 HOH HOH . C 3 HOH A 88 1188 118 HOH HOH . C 3 HOH A 89 1189 26 HOH HOH . C 3 HOH A 90 1190 146 HOH HOH . C 3 HOH A 91 1191 134 HOH HOH . C 3 HOH A 92 1192 69 HOH HOH . C 3 HOH A 93 1193 22 HOH HOH . C 3 HOH A 94 1194 97 HOH HOH . C 3 HOH A 95 1195 82 HOH HOH . C 3 HOH A 96 1196 43 HOH HOH . C 3 HOH A 97 1197 92 HOH HOH . C 3 HOH A 98 1198 77 HOH HOH . C 3 HOH A 99 1199 144 HOH HOH . C 3 HOH A 100 1200 141 HOH HOH . C 3 HOH A 101 1201 105 HOH HOH . C 3 HOH A 102 1202 1 HOH HOH . C 3 HOH A 103 1203 63 HOH HOH . C 3 HOH A 104 1204 80 HOH HOH . C 3 HOH A 105 1205 119 HOH HOH . C 3 HOH A 106 1206 98 HOH HOH . C 3 HOH A 107 1207 131 HOH HOH . C 3 HOH A 108 1208 138 HOH HOH . C 3 HOH A 109 1209 50 HOH HOH . C 3 HOH A 110 1210 41 HOH HOH . C 3 HOH A 111 1211 100 HOH HOH . C 3 HOH A 112 1212 127 HOH HOH . C 3 HOH A 113 1213 59 HOH HOH . C 3 HOH A 114 1214 116 HOH HOH . C 3 HOH A 115 1215 111 HOH HOH . C 3 HOH A 116 1216 94 HOH HOH . C 3 HOH A 117 1217 81 HOH HOH . C 3 HOH A 118 1218 87 HOH HOH . C 3 HOH A 119 1219 128 HOH HOH . C 3 HOH A 120 1220 129 HOH HOH . C 3 HOH A 121 1221 104 HOH HOH . C 3 HOH A 122 1222 95 HOH HOH . C 3 HOH A 123 1223 75 HOH HOH . C 3 HOH A 124 1224 155 HOH HOH . C 3 HOH A 125 1225 54 HOH HOH . C 3 HOH A 126 1226 49 HOH HOH . C 3 HOH A 127 1227 125 HOH HOH . C 3 HOH A 128 1228 137 HOH HOH . C 3 HOH A 129 1229 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . B 2 47.846 -43.497 -24.369 1 30.68 ? C1 CLR 1001 A 1 HETATM 2 C C2 CLR . . . B 2 48.816 -42.737 -23.506 1 33.97 ? C2 CLR 1001 A 1 HETATM 3 C C3 CLR . . . B 2 48.55 -43.104 -22.08 1 31.79 ? C3 CLR 1001 A 1 HETATM 4 C C4 CLR . . . B 2 48.839 -44.572 -21.877 1 27.51 ? C4 CLR 1001 A 1 HETATM 5 C C5 CLR . . . B 2 47.95 -45.349 -22.774 1 31.23 ? C5 CLR 1001 A 1 HETATM 6 C C6 CLR . . . B 2 47.214 -46.295 -22.245 1 30.26 ? C6 CLR 1001 A 1 HETATM 7 C C7 CLR . . . B 2 46.269 -47.087 -23.077 1 38.69 ? C7 CLR 1001 A 1 HETATM 8 C C8 CLR . . . B 2 46.472 -47.005 -24.56 1 40.44 ? C8 CLR 1001 A 1 HETATM 9 C C9 CLR . . . B 2 46.67 -45.553 -24.94 1 40.2 ? C9 CLR 1001 A 1 HETATM 10 C C10 CLR . . . B 2 47.901 -44.995 -24.24 1 37.92 ? C10 CLR 1001 A 1 HETATM 11 C C11 CLR . . . B 2 46.711 -45.356 -26.441 1 34.16 ? C11 CLR 1001 A 1 HETATM 12 C C12 CLR . . . B 2 45.597 -46.017 -27.196 1 32.49 ? C12 CLR 1001 A 1 HETATM 13 C C13 CLR . . . B 2 45.466 -47.452 -26.826 1 38.34 ? C13 CLR 1001 A 1 HETATM 14 C C14 CLR . . . B 2 45.298 -47.576 -25.348 1 40.57 ? C14 CLR 1001 A 1 HETATM 15 C C15 CLR . . . B 2 44.96 -49.013 -25.187 1 29.05 ? C15 CLR 1001 A 1 HETATM 16 C C16 CLR . . . B 2 44.09 -49.264 -26.385 1 34.41 ? C16 CLR 1001 A 1 HETATM 17 C C17 CLR . . . B 2 44.225 -48.113 -27.337 1 38.42 ? C17 CLR 1001 A 1 HETATM 18 C C18 CLR . . . B 2 46.681 -48.194 -27.31 1 31.82 ? C18 CLR 1001 A 1 HETATM 19 C C19 CLR . . . B 2 49.133 -45.556 -24.885 1 28.35 ? C19 CLR 1001 A 1 HETATM 20 C C20 CLR . . . B 2 44.23 -48.581 -28.786 1 37.05 ? C20 CLR 1001 A 1 HETATM 21 C C21 CLR . . . B 2 44.402 -47.516 -29.825 1 31.32 ? C21 CLR 1001 A 1 HETATM 22 C C22 CLR . . . B 2 42.923 -49.254 -29.075 1 36.6 ? C22 CLR 1001 A 1 HETATM 23 C C23 CLR . . . B 2 42.8 -49.827 -30.465 1 38.05 ? C23 CLR 1001 A 1 HETATM 24 C C24 CLR . . . B 2 41.411 -50.365 -30.65 1 37.64 ? C24 CLR 1001 A 1 HETATM 25 C C25 CLR . . . B 2 41.221 -51.257 -31.854 1 43.09 ? C25 CLR 1001 A 1 HETATM 26 C C26 CLR . . . B 2 41.069 -52.676 -31.418 1 45.89 ? C26 CLR 1001 A 1 HETATM 27 C C27 CLR . . . B 2 39.949 -50.953 -32.586 1 39.6 ? C27 CLR 1001 A 1 HETATM 28 O O1 CLR . . . B 2 49.366 -42.292 -21.296 1 34 ? O1 CLR 1001 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #