data_5ZMN
#
_model_server_result.job_id            nKU1EBf0MHIx6YgOD3jsYQ 
_model_server_result.datetime_utc      '2024-10-19 17:20:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zmn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    5ZMN 
#
_exptl.entry_id    5ZMN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZMN 
_cell.length_a            122.34 
_cell.length_b            122.34 
_cell.length_c            313.691 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZMN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' DG 4 B DG 4 1_555 B P GS 5 B GS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.588 ? 
covale ? covale2 B O3' GS 5 B GS 5 1_555 B P DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? 
covale ? covale3 C O3' DG 4 C DG 4 1_555 C P GS 5 C GS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.554 ? 
covale ? covale4 C O3' GS 5 C GS 5 1_555 C P DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? 
hydrog 'DC-DG PAIR' hydrog1 B N4 DC 1 B DC 1 1_555 C O6 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog2 B O2 DC 1 B DC 1 1_555 C N1 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog3 B N4 DC 2 B DC 2 1_555 C O6 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog4 B O2 DC 2 B DC 2 1_555 C N2 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog5 B N4 DC 3 B DC 3 1_555 C O6 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog6 B N2 DG 4 B DG 4 1_555 C O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N1 GS 5 B GS 5 1_555 C N3 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N2 GS 5 B GS 5 1_555 C O2 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B O6 GS 5 B GS 5 1_555 C N4 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N3 DC 6 B DC 6 1_555 C N1 GS 5 C GS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B N4 DC 6 B DC 6 1_555 C O6 GS 5 C GS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B O2 DC 6 B DC 6 1_555 C N2 GS 5 C GS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N3 DC 7 B DC 7 1_555 C N1 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N4 DC 7 B DC 7 1_555 C O6 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B O2 DC 7 B DC 7 1_555 C N2 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B N1 DG 8 B DG 8 1_555 C N3 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B N2 DG 8 B DG 8 1_555 C O2 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 B O6 DG 8 B DG 8 1_555 C N4 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 B N1 DG 9 B DG 9 1_555 C N3 DC 2 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 B N2 DG 9 B DG 9 1_555 C O2 DC 2 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 B O6 DG 9 B DG 9 1_555 C N4 DC 2 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 B N1 DG 10 B DG 10 1_555 C N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 B N2 DG 10 B DG 10 1_555 C O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 B O6 DG 10 B DG 10 1_555 C N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 403 n n 
S O2 SO4 doub 404 n n 
S O3 SO4 sing 405 n n 
S O4 SO4 sing 406 n n 
#
_atom_sites.entry_id                     5ZMN 
_atom_sites.fract_transf_matrix[1][1]    0.008174 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008174 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003188 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 SO4 A 1 501 101 SO4 SO4 . 
E 3 SO4 A 1 502 102 SO4 SO4 . 
F 3 SO4 A 1 503 103 SO4 SO4 . 
G 3 SO4 A 1 504 104 SO4 SO4 . 
H 4 HOH A 1 601 2 HOH HOH . 
H 4 HOH A 2 602 3 HOH HOH . 
H 4 HOH A 3 603 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . D 3 -51.661 -35.94 -16.986 1 104.6 ? S SO4 501 A 1 
HETATM 2 O O1 SO4 . . . D 3 -50.923 -35.116 -17.972 1 109.98 ? O1 SO4 501 A 1 
HETATM 3 O O2 SO4 . . . D 3 -53.089 -36.144 -17.377 1 102.39 ? O2 SO4 501 A 1 
HETATM 4 O O3 SO4 . . . D 3 -50.997 -37.252 -16.996 1 104.07 ? O3 SO4 501 A 1 
HETATM 5 O O4 SO4 . . . D 3 -51.565 -35.295 -15.628 1 105.62 ? O4 SO4 501 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#