data_5ZMV # _model_server_result.job_id PppcQvdM8v5axirALvrCRw _model_server_result.datetime_utc '2024-11-27 15:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2004}' # _entry.id 5ZMV # _exptl.entry_id 5ZMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.754 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID [3S-[3ALPHA,3ABETA,4ALPHA,6BETA,6ABETA,7BETA,8ALPHA(Z),9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZMV _cell.length_a 71.2 _cell.length_b 71.2 _cell.length_c 589.187 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 882 A CYS 876 1_555 A SG CYS 894 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OE1 GLN 250 A GLN 244 1_555 D NA NA . A NA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc2 A O LEU 717 A LEU 711 1_555 D NA NA . A NA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc3 A O LYS 718 A LYS 712 1_555 D NA NA . A NA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc4 A OE1 GLU 738 A GLU 732 1_555 D NA NA . A NA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc5 A OE2 GLU 738 A GLU 732 1_555 D NA NA . A NA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? # _chem_comp.formula 'C34 H50 O12' _chem_comp.formula_weight 650.754 _chem_comp.id TG1 _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THAPSIGARGIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C11 TG1 sing 421 n n C34 H341 TG1 sing 422 n n C34 H342 TG1 sing 423 n n C34 H343 TG1 sing 424 n n C11 C7 TG1 sing 425 n n C11 C12 TG1 sing 426 n n C11 O11 TG1 sing 427 n n C7 C8 TG1 sing 428 n n C7 C6 TG1 sing 429 n n C7 O6 TG1 sing 430 n n C8 C9 TG1 sing 431 n n C8 O7 TG1 sing 432 n n C8 HC8 TG1 sing 433 n n C9 C10 TG1 sing 434 n n C9 HC91 TG1 sing 435 n n C9 HC92 TG1 sing 436 n n C10 C1 TG1 sing 437 n n C10 C31 TG1 sing 438 n n C10 O9 TG1 sing 439 n n C1 C2 TG1 sing 440 n n C1 C5 TG1 sing 441 n n C1 HC1 TG1 sing 442 n n C2 O1 TG1 sing 443 n n C2 C3 TG1 sing 444 n n C2 HC2 TG1 sing 445 n n O1 C13 TG1 sing 446 n n C13 O2 TG1 doub 447 n n C13 C14 TG1 sing 448 n n C14 C15 TG1 sing 449 n n C14 H141 TG1 sing 450 n n C14 H142 TG1 sing 451 n n C15 C16 TG1 sing 452 n n C15 H151 TG1 sing 453 n n C15 H152 TG1 sing 454 n n C16 C17 TG1 sing 455 n n C16 H161 TG1 sing 456 n n C16 H162 TG1 sing 457 n n C17 C18 TG1 sing 458 n n C17 H171 TG1 sing 459 n n C17 H172 TG1 sing 460 n n C18 C19 TG1 sing 461 n n C18 H181 TG1 sing 462 n n C18 H182 TG1 sing 463 n n C19 C20 TG1 sing 464 n n C19 H191 TG1 sing 465 n n C19 H192 TG1 sing 466 n n C20 H201 TG1 sing 467 n n C20 H202 TG1 sing 468 n n C20 H203 TG1 sing 469 n n C3 O3 TG1 sing 470 n n C3 C4 TG1 sing 471 n n C3 HC3 TG1 sing 472 n n O3 C21 TG1 sing 473 n n C21 O4 TG1 doub 474 n n C21 C22 TG1 sing 475 n n C22 C23 TG1 sing 476 n n C22 C24 TG1 doub 477 z n C23 H231 TG1 sing 478 n n C23 H232 TG1 sing 479 n n C23 H233 TG1 sing 480 n n C24 C25 TG1 sing 481 n n C24 H24 TG1 sing 482 n n C25 H251 TG1 sing 483 n n C25 H252 TG1 sing 484 n n C25 H253 TG1 sing 485 n n C4 C26 TG1 sing 486 n n C4 C5 TG1 doub 487 n n C26 H261 TG1 sing 488 n n C26 H262 TG1 sing 489 n n C26 H263 TG1 sing 490 n n C5 C6 TG1 sing 491 n n C6 O5 TG1 sing 492 n n C6 HC6 TG1 sing 493 n n O5 C12 TG1 sing 494 n n C12 O12 TG1 doub 495 n n C31 H311 TG1 sing 496 n n C31 H312 TG1 sing 497 n n C31 H313 TG1 sing 498 n n O9 C32 TG1 sing 499 n n C32 O10 TG1 doub 500 n n C32 C33 TG1 sing 501 n n C33 H331 TG1 sing 502 n n C33 H332 TG1 sing 503 n n C33 H333 TG1 sing 504 n n O7 C27 TG1 sing 505 n n C27 O8 TG1 doub 506 n n C27 C28 TG1 sing 507 n n C28 C29 TG1 sing 508 n n C28 H281 TG1 sing 509 n n C28 H282 TG1 sing 510 n n C29 C30 TG1 sing 511 n n C29 H291 TG1 sing 512 n n C29 H292 TG1 sing 513 n n C30 H301 TG1 sing 514 n n C30 H302 TG1 sing 515 n n C30 H303 TG1 sing 516 n n O6 HO6 TG1 sing 517 n n O11 HO11 TG1 sing 518 n n # _atom_sites.entry_id 5ZMV _atom_sites.fract_transf_matrix[1][1] 0.014045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 2001 2001 SO4 SO4 . C 2 SO4 A 1 2002 2002 SO4 SO4 . D 3 NA A 1 2003 995 NA NA . E 4 TG1 A 1 2004 1002 TG1 TG1 . F 5 PTY A 1 2005 1011 PTY PTY . G 5 PTY A 1 2006 1012 PTY PTY . H 5 PTY A 1 2007 1013 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 TG1 . . . E 4 40.072 -24.236 56.934 1 193.77 ? C34 TG1 2004 A 1 HETATM 2 C C11 TG1 . . . E 4 39.361 -24.285 58.292 1 187.49 ? C11 TG1 2004 A 1 HETATM 3 C C7 TG1 . . . E 4 40.281 -24.626 59.562 1 187.44 ? C7 TG1 2004 A 1 HETATM 4 C C8 TG1 . . . E 4 41.458 -23.67 59.85 1 187.16 ? C8 TG1 2004 A 1 HETATM 5 C C9 TG1 . . . E 4 42.304 -24.026 61.104 1 186.4 ? C9 TG1 2004 A 1 HETATM 6 C C10 TG1 . . . E 4 41.745 -24.305 62.539 1 186.03 ? C10 TG1 2004 A 1 HETATM 7 C C1 TG1 . . . E 4 40.732 -25.476 62.687 1 187 ? C1 TG1 2004 A 1 HETATM 8 C C2 TG1 . . . E 4 40.35 -25.719 64.181 1 187.99 ? C2 TG1 2004 A 1 HETATM 9 O O1 TG1 . . . E 4 40.651 -27.071 64.558 1 188.11 ? O1 TG1 2004 A 1 HETATM 10 C C13 TG1 . . . E 4 41.422 -27.269 65.701 1 189.09 ? C13 TG1 2004 A 1 HETATM 11 O O2 TG1 . . . E 4 42.14 -26.372 66.111 1 188.82 ? O2 TG1 2004 A 1 HETATM 12 C C14 TG1 . . . E 4 41.268 -28.636 66.331 1 189.08 ? C14 TG1 2004 A 1 HETATM 13 C C15 TG1 . . . E 4 40.636 -28.561 67.737 1 188.34 ? C15 TG1 2004 A 1 HETATM 14 C C16 TG1 . . . E 4 40.744 -29.809 68.637 1 192.92 ? C16 TG1 2004 A 1 HETATM 15 C C17 TG1 . . . E 4 40.988 -29.48 70.126 1 193.92 ? C17 TG1 2004 A 1 HETATM 16 C C18 TG1 . . . E 4 40.519 -30.548 71.126 1 194.34 ? C18 TG1 2004 A 1 HETATM 17 C C19 TG1 . . . E 4 41.649 -31.2 71.936 1 190.87 ? C19 TG1 2004 A 1 HETATM 18 C C20 TG1 . . . E 4 41.289 -31.331 73.407 1 185.48 ? C20 TG1 2004 A 1 HETATM 19 C C3 TG1 . . . E 4 38.827 -25.556 64.4 1 188.31 ? C3 TG1 2004 A 1 HETATM 20 O O3 TG1 . . . E 4 38.646 -24.364 65.129 1 189.57 ? O3 TG1 2004 A 1 HETATM 21 C C21 TG1 . . . E 4 38.191 -24.536 66.429 1 190.89 ? C21 TG1 2004 A 1 HETATM 22 O O4 TG1 . . . E 4 37.095 -25.044 66.563 1 198.54 ? O4 TG1 2004 A 1 HETATM 23 C C22 TG1 . . . E 4 39.119 -24.068 67.52 1 189.98 ? C22 TG1 2004 A 1 HETATM 24 C C23 TG1 . . . E 4 39.131 -25.121 68.637 1 190.41 ? C23 TG1 2004 A 1 HETATM 25 C C24 TG1 . . . E 4 38.698 -22.75 68.178 1 189.95 ? C24 TG1 2004 A 1 HETATM 26 C C25 TG1 . . . E 4 38.486 -21.567 67.261 1 189.47 ? C25 TG1 2004 A 1 HETATM 27 C C4 TG1 . . . E 4 38.181 -25.554 63.005 1 187.68 ? C4 TG1 2004 A 1 HETATM 28 C C26 TG1 . . . E 4 36.855 -24.86 62.749 1 187.07 ? C26 TG1 2004 A 1 HETATM 29 C C5 TG1 . . . E 4 39.346 -25.414 61.949 1 187.49 ? C5 TG1 2004 A 1 HETATM 30 C C6 TG1 . . . E 4 39.096 -24.77 60.568 1 187.77 ? C6 TG1 2004 A 1 HETATM 31 O O5 TG1 . . . E 4 38.187 -25.606 59.853 1 189.66 ? O5 TG1 2004 A 1 HETATM 32 C C12 TG1 . . . E 4 38.368 -25.481 58.457 1 187.65 ? C12 TG1 2004 A 1 HETATM 33 O O12 TG1 . . . E 4 37.132 -25.179 57.943 1 187.09 ? O12 TG1 2004 A 1 HETATM 34 C C31 TG1 . . . E 4 41.207 -22.977 63.163 1 185.86 ? C31 TG1 2004 A 1 HETATM 35 O O9 TG1 . . . E 4 42.879 -24.628 63.379 1 184.68 ? O9 TG1 2004 A 1 HETATM 36 C C32 TG1 . . . E 4 43.963 -24.023 63.935 1 184.27 ? C32 TG1 2004 A 1 HETATM 37 O O10 TG1 . . . E 4 44.505 -23.128 63.318 1 184.14 ? O10 TG1 2004 A 1 HETATM 38 C C33 TG1 . . . E 4 44.759 -25.213 64.408 1 183.94 ? C33 TG1 2004 A 1 HETATM 39 O O7 TG1 . . . E 4 40.938 -22.353 59.97 1 187.35 ? O7 TG1 2004 A 1 HETATM 40 C C27 TG1 . . . E 4 41.206 -21.434 58.963 1 187.4 ? C27 TG1 2004 A 1 HETATM 41 O O8 TG1 . . . E 4 41.999 -21.695 58.066 1 187.55 ? O8 TG1 2004 A 1 HETATM 42 C C28 TG1 . . . E 4 40.414 -20.164 59.115 1 187.35 ? C28 TG1 2004 A 1 HETATM 43 C C29 TG1 . . . E 4 39.408 -20.033 57.975 1 186.69 ? C29 TG1 2004 A 1 HETATM 44 C C30 TG1 . . . E 4 38.541 -18.812 58.203 1 187.07 ? C30 TG1 2004 A 1 HETATM 45 O O6 TG1 . . . E 4 40.832 -25.916 59.369 1 187.63 ? O6 TG1 2004 A 1 HETATM 46 O O11 TG1 . . . E 4 38.746 -23.055 58.549 1 187.44 ? O11 TG1 2004 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #