data_5ZMW
#
_model_server_result.job_id            qKl-d7Wu1vq5A8BNMQVxSg 
_model_server_result.datetime_utc      '2024-11-04 23:21:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zmw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    5ZMW 
#
_exptl.entry_id    5ZMW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZMW 
_cell.length_a            260.977 
_cell.length_b            86.895 
_cell.length_c            60.211 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZMW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 882 A CYS 876 1_555 A SG CYS 894 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A O LEU 717 A LEU 711 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc2 A O LYS 718 A LYS 712 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc3 A O ALA 720 A ALA 714 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc4 A OE1 GLU 738 A GLU 732 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc5 A OE2 GLU 738 A GLU 732 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.162 ? 
metalc ? metalc6 B NA NA . A NA 1001 1_555 G O HOH . A HOH 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc7 B NA NA . A NA 1001 1_555 G O HOH . A HOH 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5ZMW 
_atom_sites.fract_transf_matrix[1][1]    0.003832 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011508 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016608 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 1001 1000 NA NA . 
C 3 SO4 A 1 1002 3001 SO4 SO4 . 
D 4 TG1 A 1 1003 1002 TG1 TG1 . 
E 5 DMU A 1 1004 2001 DMU DMU . 
F 5 DMU A 1 1005 2002 DMU DMU . 
G 6 HOH A 1 1101 1803 HOH HOH . 
G 6 HOH A 2 1102 1182 HOH HOH . 
G 6 HOH A 3 1103 1815 HOH HOH . 
G 6 HOH A 4 1104 1543 HOH HOH . 
G 6 HOH A 5 1105 1403 HOH HOH . 
G 6 HOH A 6 1106 1331 HOH HOH . 
G 6 HOH A 7 1107 1171 HOH HOH . 
G 6 HOH A 8 1108 1813 HOH HOH . 
G 6 HOH A 9 1109 1528 HOH HOH . 
G 6 HOH A 10 1110 1304 HOH HOH . 
G 6 HOH A 11 1111 1540 HOH HOH . 
G 6 HOH A 12 1112 1637 HOH HOH . 
G 6 HOH A 13 1113 1727 HOH HOH . 
G 6 HOH A 14 1114 1628 HOH HOH . 
G 6 HOH A 15 1115 1144 HOH HOH . 
G 6 HOH A 16 1116 1621 HOH HOH . 
G 6 HOH A 17 1117 1822 HOH HOH . 
G 6 HOH A 18 1118 1603 HOH HOH . 
G 6 HOH A 19 1119 1510 HOH HOH . 
G 6 HOH A 20 1120 1505 HOH HOH . 
G 6 HOH A 21 1121 1709 HOH HOH . 
G 6 HOH A 22 1122 1108 HOH HOH . 
G 6 HOH A 23 1123 1103 HOH HOH . 
G 6 HOH A 24 1124 1147 HOH HOH . 
G 6 HOH A 25 1125 1109 HOH HOH . 
G 6 HOH A 26 1126 1818 HOH HOH . 
G 6 HOH A 27 1127 1519 HOH HOH . 
G 6 HOH A 28 1128 1821 HOH HOH . 
G 6 HOH A 29 1129 1302 HOH HOH . 
G 6 HOH A 30 1130 1529 HOH HOH . 
G 6 HOH A 31 1131 1533 HOH HOH . 
G 6 HOH A 32 1132 1714 HOH HOH . 
G 6 HOH A 33 1133 1113 HOH HOH . 
G 6 HOH A 34 1134 1816 HOH HOH . 
G 6 HOH A 35 1135 1518 HOH HOH . 
G 6 HOH A 36 1136 1124 HOH HOH . 
G 6 HOH A 37 1137 1522 HOH HOH . 
G 6 HOH A 38 1138 1548 HOH HOH . 
G 6 HOH A 39 1139 1337 HOH HOH . 
G 6 HOH A 40 1140 1305 HOH HOH . 
G 6 HOH A 41 1141 1526 HOH HOH . 
G 6 HOH A 42 1142 1633 HOH HOH . 
G 6 HOH A 43 1143 1194 HOH HOH . 
G 6 HOH A 44 1144 1195 HOH HOH . 
G 6 HOH A 45 1145 1725 HOH HOH . 
G 6 HOH A 46 1146 1179 HOH HOH . 
G 6 HOH A 47 1147 1312 HOH HOH . 
G 6 HOH A 48 1148 1817 HOH HOH . 
G 6 HOH A 49 1149 1706 HOH HOH . 
G 6 HOH A 50 1150 1177 HOH HOH . 
G 6 HOH A 51 1151 1152 HOH HOH . 
G 6 HOH A 52 1152 1805 HOH HOH . 
G 6 HOH A 53 1153 1317 HOH HOH . 
G 6 HOH A 54 1154 1300 HOH HOH . 
G 6 HOH A 55 1155 1611 HOH HOH . 
G 6 HOH A 56 1156 1106 HOH HOH . 
G 6 HOH A 57 1157 1136 HOH HOH . 
G 6 HOH A 58 1158 1156 HOH HOH . 
G 6 HOH A 59 1159 1114 HOH HOH . 
G 6 HOH A 60 1160 1132 HOH HOH . 
G 6 HOH A 61 1161 1163 HOH HOH . 
G 6 HOH A 62 1162 1401 HOH HOH . 
G 6 HOH A 63 1163 1105 HOH HOH . 
G 6 HOH A 64 1164 1315 HOH HOH . 
G 6 HOH A 65 1165 1728 HOH HOH . 
G 6 HOH A 66 1166 1303 HOH HOH . 
G 6 HOH A 67 1167 1185 HOH HOH . 
G 6 HOH A 68 1168 1802 HOH HOH . 
G 6 HOH A 69 1169 1117 HOH HOH . 
G 6 HOH A 70 1170 1104 HOH HOH . 
G 6 HOH A 71 1171 1145 HOH HOH . 
G 6 HOH A 72 1172 1517 HOH HOH . 
G 6 HOH A 73 1173 1313 HOH HOH . 
G 6 HOH A 74 1174 1801 HOH HOH . 
G 6 HOH A 75 1175 1307 HOH HOH . 
G 6 HOH A 76 1176 1811 HOH HOH . 
G 6 HOH A 77 1177 1154 HOH HOH . 
G 6 HOH A 78 1178 1501 HOH HOH . 
G 6 HOH A 79 1179 1166 HOH HOH . 
G 6 HOH A 80 1180 1544 HOH HOH . 
G 6 HOH A 81 1181 1713 HOH HOH . 
G 6 HOH A 82 1182 1310 HOH HOH . 
G 6 HOH A 83 1183 1809 HOH HOH . 
G 6 HOH A 84 1184 1546 HOH HOH . 
G 6 HOH A 85 1185 1549 HOH HOH . 
G 6 HOH A 86 1186 1164 HOH HOH . 
G 6 HOH A 87 1187 1137 HOH HOH . 
G 6 HOH A 88 1188 1101 HOH HOH . 
G 6 HOH A 89 1189 1541 HOH HOH . 
G 6 HOH A 90 1190 1150 HOH HOH . 
G 6 HOH A 91 1191 1133 HOH HOH . 
G 6 HOH A 92 1192 1138 HOH HOH . 
G 6 HOH A 93 1193 1322 HOH HOH . 
G 6 HOH A 94 1194 1632 HOH HOH . 
G 6 HOH A 95 1195 1110 HOH HOH . 
G 6 HOH A 96 1196 1188 HOH HOH . 
G 6 HOH A 97 1197 1726 HOH HOH . 
G 6 HOH A 98 1198 1125 HOH HOH . 
G 6 HOH A 99 1199 1128 HOH HOH . 
G 6 HOH A 100 1200 1201 HOH HOH . 
G 6 HOH A 101 1201 1306 HOH HOH . 
G 6 HOH A 102 1202 1116 HOH HOH . 
G 6 HOH A 103 1203 1502 HOH HOH . 
G 6 HOH A 104 1204 1343 HOH HOH . 
G 6 HOH A 105 1205 1720 HOH HOH . 
G 6 HOH A 106 1206 1127 HOH HOH . 
G 6 HOH A 107 1207 1157 HOH HOH . 
G 6 HOH A 108 1208 1351 HOH HOH . 
G 6 HOH A 109 1209 1503 HOH HOH . 
G 6 HOH A 110 1210 1333 HOH HOH . 
G 6 HOH A 111 1211 1701 HOH HOH . 
G 6 HOH A 112 1212 1167 HOH HOH . 
G 6 HOH A 113 1213 1327 HOH HOH . 
G 6 HOH A 114 1214 1535 HOH HOH . 
G 6 HOH A 115 1215 1358 HOH HOH . 
G 6 HOH A 116 1216 1338 HOH HOH . 
G 6 HOH A 117 1217 1702 HOH HOH . 
G 6 HOH A 118 1218 1184 HOH HOH . 
G 6 HOH A 119 1219 1119 HOH HOH . 
G 6 HOH A 120 1220 1111 HOH HOH . 
G 6 HOH A 121 1221 1810 HOH HOH . 
G 6 HOH A 122 1222 1703 HOH HOH . 
G 6 HOH A 123 1223 1601 HOH HOH . 
G 6 HOH A 124 1224 1102 HOH HOH . 
G 6 HOH A 125 1225 1718 HOH HOH . 
G 6 HOH A 126 1226 1614 HOH HOH . 
G 6 HOH A 127 1227 1622 HOH HOH . 
G 6 HOH A 128 1228 1635 HOH HOH . 
G 6 HOH A 129 1229 1183 HOH HOH . 
G 6 HOH A 130 1230 1525 HOH HOH . 
G 6 HOH A 131 1231 1123 HOH HOH . 
G 6 HOH A 132 1232 1153 HOH HOH . 
G 6 HOH A 133 1233 1804 HOH HOH . 
G 6 HOH A 134 1234 1146 HOH HOH . 
G 6 HOH A 135 1235 1308 HOH HOH . 
G 6 HOH A 136 1236 1547 HOH HOH . 
G 6 HOH A 137 1237 1507 HOH HOH . 
G 6 HOH A 138 1238 1506 HOH HOH . 
G 6 HOH A 139 1239 1324 HOH HOH . 
G 6 HOH A 140 1240 1126 HOH HOH . 
G 6 HOH A 141 1241 1602 HOH HOH . 
G 6 HOH A 142 1242 1311 HOH HOH . 
G 6 HOH A 143 1243 1631 HOH HOH . 
G 6 HOH A 144 1244 1357 HOH HOH . 
G 6 HOH A 145 1245 1819 HOH HOH . 
G 6 HOH A 146 1246 1196 HOH HOH . 
G 6 HOH A 147 1247 1316 HOH HOH . 
G 6 HOH A 148 1248 1538 HOH HOH . 
G 6 HOH A 149 1249 1524 HOH HOH . 
G 6 HOH A 150 1250 1181 HOH HOH . 
G 6 HOH A 151 1251 1210 HOH HOH . 
G 6 HOH A 152 1252 1812 HOH HOH . 
G 6 HOH A 153 1253 1616 HOH HOH . 
G 6 HOH A 154 1254 1723 HOH HOH . 
G 6 HOH A 155 1255 1612 HOH HOH . 
G 6 HOH A 156 1256 1349 HOH HOH . 
G 6 HOH A 157 1257 1402 HOH HOH . 
G 6 HOH A 158 1258 1344 HOH HOH . 
G 6 HOH A 159 1259 1323 HOH HOH . 
G 6 HOH A 160 1260 1332 HOH HOH . 
G 6 HOH A 161 1261 1606 HOH HOH . 
G 6 HOH A 162 1262 1143 HOH HOH . 
G 6 HOH A 163 1263 1346 HOH HOH . 
G 6 HOH A 164 1264 1724 HOH HOH . 
G 6 HOH A 165 1265 1537 HOH HOH . 
G 6 HOH A 166 1266 1120 HOH HOH . 
G 6 HOH A 167 1267 1605 HOH HOH . 
G 6 HOH A 168 1268 1325 HOH HOH . 
G 6 HOH A 169 1269 1301 HOH HOH . 
G 6 HOH A 170 1270 1626 HOH HOH . 
G 6 HOH A 171 1271 1112 HOH HOH . 
G 6 HOH A 172 1272 1516 HOH HOH . 
G 6 HOH A 173 1273 1158 HOH HOH . 
G 6 HOH A 174 1274 1806 HOH HOH . 
G 6 HOH A 175 1275 1715 HOH HOH . 
G 6 HOH A 176 1276 1504 HOH HOH . 
G 6 HOH A 177 1277 1716 HOH HOH . 
G 6 HOH A 178 1278 1352 HOH HOH . 
G 6 HOH A 179 1279 1160 HOH HOH . 
G 6 HOH A 180 1280 1520 HOH HOH . 
G 6 HOH A 181 1281 1330 HOH HOH . 
G 6 HOH A 182 1282 1129 HOH HOH . 
G 6 HOH A 183 1283 1539 HOH HOH . 
G 6 HOH A 184 1284 1607 HOH HOH . 
G 6 HOH A 185 1285 1814 HOH HOH . 
G 6 HOH A 186 1286 1515 HOH HOH . 
G 6 HOH A 187 1287 1509 HOH HOH . 
G 6 HOH A 188 1288 1707 HOH HOH . 
G 6 HOH A 189 1289 1211 HOH HOH . 
G 6 HOH A 190 1290 1627 HOH HOH . 
G 6 HOH A 191 1291 1345 HOH HOH . 
G 6 HOH A 192 1292 1335 HOH HOH . 
G 6 HOH A 193 1293 1354 HOH HOH . 
G 6 HOH A 194 1294 1710 HOH HOH . 
G 6 HOH A 195 1295 1521 HOH HOH . 
G 6 HOH A 196 1296 1610 HOH HOH . 
G 6 HOH A 197 1297 1350 HOH HOH . 
G 6 HOH A 198 1298 1161 HOH HOH . 
G 6 HOH A 199 1299 1149 HOH HOH . 
G 6 HOH A 200 1300 1162 HOH HOH . 
G 6 HOH A 201 1301 1329 HOH HOH . 
G 6 HOH A 202 1302 1711 HOH HOH . 
G 6 HOH A 203 1303 1180 HOH HOH . 
G 6 HOH A 204 1304 1534 HOH HOH . 
G 6 HOH A 205 1305 1340 HOH HOH . 
G 6 HOH A 206 1306 1630 HOH HOH . 
G 6 HOH A 207 1307 1704 HOH HOH . 
G 6 HOH A 208 1308 1545 HOH HOH . 
G 6 HOH A 209 1309 1355 HOH HOH . 
G 6 HOH A 210 1310 1203 HOH HOH . 
G 6 HOH A 211 1311 1328 HOH HOH . 
G 6 HOH A 212 1312 1617 HOH HOH . 
G 6 HOH A 213 1313 1141 HOH HOH . 
G 6 HOH A 214 1314 1807 HOH HOH . 
G 6 HOH A 215 1315 1708 HOH HOH . 
G 6 HOH A 216 1316 1523 HOH HOH . 
G 6 HOH A 217 1317 1508 HOH HOH . 
G 6 HOH A 218 1318 1721 HOH HOH . 
G 6 HOH A 219 1319 1513 HOH HOH . 
G 6 HOH A 220 1320 1314 HOH HOH . 
G 6 HOH A 221 1321 1615 HOH HOH . 
G 6 HOH A 222 1322 1500 HOH HOH . 
G 6 HOH A 223 1323 1705 HOH HOH . 
G 6 HOH A 224 1324 1808 HOH HOH . 
G 6 HOH A 225 1325 1530 HOH HOH . 
G 6 HOH A 226 1326 1820 HOH HOH . 
G 6 HOH A 227 1327 1309 HOH HOH . 
G 6 HOH A 228 1328 1609 HOH HOH . 
G 6 HOH A 229 1329 1712 HOH HOH . 
G 6 HOH A 230 1330 1511 HOH HOH . 
G 6 HOH A 231 1331 1719 HOH HOH . 
G 6 HOH A 232 1332 1623 HOH HOH . 
G 6 HOH A 233 1333 1542 HOH HOH . 
G 6 HOH A 234 1334 1625 HOH HOH . 
G 6 HOH A 235 1335 1634 HOH HOH . 
G 6 HOH A 236 1336 1531 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               171.142 
_atom_site.Cartn_y               25.619 
_atom_site.Cartn_z               -2.407 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        42.74 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#