data_5ZNH # _model_server_result.job_id PmXWTW8izeYbFCmO1Yhd4w _model_server_result.datetime_utc '2024-11-25 00:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5znh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5ZNH # _exptl.entry_id 5ZNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZNH _cell.length_a 101.894 _cell.length_b 101.894 _cell.length_c 114.369 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 101.894 0 0 3 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 114.369 4 'crystal symmetry operation' 11_656 -x+y+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 101.894 0 114.369 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 149 A ASP 149 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc2 A NE2 HIS 150 A HIS 150 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 A OG1 THR 204 A THR 204 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc4 A O HIS 206 A HIS 206 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc5 A OD1 ASP 207 A ASP 207 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc6 A NE2 HIS 220 A HIS 220 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc7 A OE1 GLU 271 A GLU 271 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc8 B FE FE . A FE 401 1_555 C O4 MCT . A MCT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc9 B FE FE . A FE 401 1_555 C O3 MCT . A MCT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 F CA CA . A CA 405 1_555 G O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5ZNH _atom_sites.fract_transf_matrix[1][1] 0.009814 _atom_sites.fract_transf_matrix[1][2] 0.005666 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 401 1 FE FE . C 3 MCT A 1 402 1 MCT MCT . D 4 PEG A 1 403 1 PEG PEG . E 5 EDO A 1 404 2 EDO EDO . F 6 CA A 1 405 1 CA CA . G 7 HOH A 1 501 10 HOH HOH . G 7 HOH A 2 502 11 HOH HOH . G 7 HOH A 3 503 55 HOH HOH . G 7 HOH A 4 504 23 HOH HOH . G 7 HOH A 5 505 4 HOH HOH . G 7 HOH A 6 506 57 HOH HOH . G 7 HOH A 7 507 45 HOH HOH . G 7 HOH A 8 508 31 HOH HOH . G 7 HOH A 9 509 13 HOH HOH . G 7 HOH A 10 510 15 HOH HOH . G 7 HOH A 11 511 28 HOH HOH . G 7 HOH A 12 512 3 HOH HOH . G 7 HOH A 13 513 12 HOH HOH . G 7 HOH A 14 514 58 HOH HOH . G 7 HOH A 15 515 18 HOH HOH . G 7 HOH A 16 516 7 HOH HOH . G 7 HOH A 17 517 6 HOH HOH . G 7 HOH A 18 518 9 HOH HOH . G 7 HOH A 19 519 17 HOH HOH . G 7 HOH A 20 520 41 HOH HOH . G 7 HOH A 21 521 19 HOH HOH . G 7 HOH A 22 522 8 HOH HOH . G 7 HOH A 23 523 5 HOH HOH . G 7 HOH A 24 524 2 HOH HOH . G 7 HOH A 25 525 56 HOH HOH . G 7 HOH A 26 526 43 HOH HOH . G 7 HOH A 27 527 53 HOH HOH . G 7 HOH A 28 528 26 HOH HOH . G 7 HOH A 29 529 30 HOH HOH . G 7 HOH A 30 530 38 HOH HOH . G 7 HOH A 31 531 35 HOH HOH . G 7 HOH A 32 532 27 HOH HOH . G 7 HOH A 33 533 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 20.844 18.578 34.7 1 51.04 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 5 20.218 17.341 34.495 1 56.67 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 5 22.118 18.367 35.515 1 50.88 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 5 22.752 19.599 35.726 1 61.35 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #