data_5ZNI # _model_server_result.job_id XuLvh_edYAiijeDtjpVLRA _model_server_result.datetime_utc '2024-10-14 21:19:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5ZNI # _exptl.entry_id 5ZNI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ZNI _cell.length_a 95.591 _cell.length_b 95.591 _cell.length_c 136.571 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZNI _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 47.7955 82.784234 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -47.7955 82.784234 0 4 'crystal symmetry operation' 10_455 y-1/3,x+1/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -47.7955 27.594745 45.523667 5 'crystal symmetry operation' 11_565 x-y+2/3,-y+4/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 110.378979 45.523667 6 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 47.7955 27.594745 45.523667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5ZNI _atom_sites.fract_transf_matrix[1][1] 0.010461 _atom_sites.fract_transf_matrix[1][2] 0.00604 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 301 1 PO4 PO4 . C 3 YMZ A 1 302 1 YMZ MFQ . D 4 HOH A 1 401 23 HOH HOH . D 4 HOH A 2 402 171 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 158 HOH HOH . D 4 HOH A 5 405 17 HOH HOH . D 4 HOH A 6 406 32 HOH HOH . D 4 HOH A 7 407 9 HOH HOH . D 4 HOH A 8 408 167 HOH HOH . D 4 HOH A 9 409 161 HOH HOH . D 4 HOH A 10 410 162 HOH HOH . D 4 HOH A 11 411 31 HOH HOH . D 4 HOH A 12 412 81 HOH HOH . D 4 HOH A 13 413 10 HOH HOH . D 4 HOH A 14 414 148 HOH HOH . D 4 HOH A 15 415 176 HOH HOH . D 4 HOH A 16 416 157 HOH HOH . D 4 HOH A 17 417 151 HOH HOH . D 4 HOH A 18 418 1 HOH HOH . D 4 HOH A 19 419 6 HOH HOH . D 4 HOH A 20 420 164 HOH HOH . D 4 HOH A 21 421 11 HOH HOH . D 4 HOH A 22 422 173 HOH HOH . D 4 HOH A 23 423 25 HOH HOH . D 4 HOH A 24 424 19 HOH HOH . D 4 HOH A 25 425 152 HOH HOH . D 4 HOH A 26 426 169 HOH HOH . D 4 HOH A 27 427 180 HOH HOH . D 4 HOH A 28 428 8 HOH HOH . D 4 HOH A 29 429 147 HOH HOH . D 4 HOH A 30 430 7 HOH HOH . D 4 HOH A 31 431 18 HOH HOH . D 4 HOH A 32 432 43 HOH HOH . D 4 HOH A 33 433 4 HOH HOH . D 4 HOH A 34 434 29 HOH HOH . D 4 HOH A 35 435 150 HOH HOH . D 4 HOH A 36 436 24 HOH HOH . D 4 HOH A 37 437 58 HOH HOH . D 4 HOH A 38 438 109 HOH HOH . D 4 HOH A 39 439 48 HOH HOH . D 4 HOH A 40 440 15 HOH HOH . D 4 HOH A 41 441 64 HOH HOH . D 4 HOH A 42 442 12 HOH HOH . D 4 HOH A 43 443 154 HOH HOH . D 4 HOH A 44 444 54 HOH HOH . D 4 HOH A 45 445 168 HOH HOH . D 4 HOH A 46 446 153 HOH HOH . D 4 HOH A 47 447 159 HOH HOH . D 4 HOH A 48 448 149 HOH HOH . D 4 HOH A 49 449 65 HOH HOH . D 4 HOH A 50 450 165 HOH HOH . D 4 HOH A 51 451 175 HOH HOH . D 4 HOH A 52 452 143 HOH HOH . D 4 HOH A 53 453 34 HOH HOH . D 4 HOH A 54 454 170 HOH HOH . D 4 HOH A 55 455 174 HOH HOH . D 4 HOH A 56 456 51 HOH HOH . D 4 HOH A 57 457 172 HOH HOH . D 4 HOH A 58 458 38 HOH HOH . D 4 HOH A 59 459 46 HOH HOH . D 4 HOH A 60 460 178 HOH HOH . D 4 HOH A 61 461 52 HOH HOH . D 4 HOH A 62 462 60 HOH HOH . D 4 HOH A 63 463 55 HOH HOH . D 4 HOH A 64 464 22 HOH HOH . D 4 HOH A 65 465 45 HOH HOH . D 4 HOH A 66 466 33 HOH HOH . D 4 HOH A 67 467 5 HOH HOH . D 4 HOH A 68 468 177 HOH HOH . D 4 HOH A 69 469 82 HOH HOH . D 4 HOH A 70 470 20 HOH HOH . D 4 HOH A 71 471 49 HOH HOH . D 4 HOH A 72 472 56 HOH HOH . D 4 HOH A 73 473 75 HOH HOH . D 4 HOH A 74 474 47 HOH HOH . D 4 HOH A 75 475 14 HOH HOH . D 4 HOH A 76 476 156 HOH HOH . D 4 HOH A 77 477 53 HOH HOH . D 4 HOH A 78 478 155 HOH HOH . D 4 HOH A 79 479 160 HOH HOH . D 4 HOH A 80 480 166 HOH HOH . D 4 HOH A 81 481 27 HOH HOH . D 4 HOH A 82 482 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 -6.82 25.886 16.395 1 52.55 ? P PO4 301 A 1 HETATM 2 O O1 PO4 . . . B 2 -6.495 26.023 14.926 1 46.54 ? O1 PO4 301 A 1 HETATM 3 O O2 PO4 . . . B 2 -6.736 27.241 17.057 1 47.83 ? O2 PO4 301 A 1 HETATM 4 O O3 PO4 . . . B 2 -8.216 25.334 16.552 1 56.39 ? O3 PO4 301 A 1 HETATM 5 O O4 PO4 . . . B 2 -5.831 24.947 17.043 1 52.3 ? O4 PO4 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 719 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #