data_5ZNJ # _model_server_result.job_id 0z4L4rSCb3KryhX6Kec_eQ _model_server_result.datetime_utc '2024-11-27 13:34:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5znj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 5ZNJ # _exptl.entry_id 5ZNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.36 _cell.angle_gamma 90 _cell.entry_id 5ZNJ _cell.length_a 130.139 _cell.length_b 77.535 _cell.length_c 74.226 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -12.071906 0 73.237751 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O2G ANP . A ANP 601 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 B O2B ANP . A ANP 601 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 D MG MG . A MG 603 1_555 G O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc4 D MG MG . A MG 603 1_555 G O HOH . A HOH 767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 D MG MG . A MG 603 1_555 G O HOH . A HOH 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc6 D MG MG . A MG 603 1_555 G O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 5ZNJ _atom_sites.fract_transf_matrix[1][1] 0.007684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001267 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 601 5000 ANP ANP . C 3 HFG A 1 602 6000 HFG HFG . D 4 MG A 1 603 7000 MG MG . E 5 PO4 A 1 604 1 PO4 PO4 . F 6 GOL A 1 605 1 GOL GOL . G 7 HOH A 1 701 267 HOH HOH . G 7 HOH A 2 702 121 HOH HOH . G 7 HOH A 3 703 192 HOH HOH . G 7 HOH A 4 704 63 HOH HOH . G 7 HOH A 5 705 138 HOH HOH . G 7 HOH A 6 706 105 HOH HOH . G 7 HOH A 7 707 6 HOH HOH . G 7 HOH A 8 708 270 HOH HOH . G 7 HOH A 9 709 208 HOH HOH . G 7 HOH A 10 710 142 HOH HOH . G 7 HOH A 11 711 77 HOH HOH . G 7 HOH A 12 712 110 HOH HOH . G 7 HOH A 13 713 221 HOH HOH . G 7 HOH A 14 714 60 HOH HOH . G 7 HOH A 15 715 167 HOH HOH . G 7 HOH A 16 716 209 HOH HOH . G 7 HOH A 17 717 37 HOH HOH . G 7 HOH A 18 718 17 HOH HOH . G 7 HOH A 19 719 27 HOH HOH . G 7 HOH A 20 720 3 HOH HOH . G 7 HOH A 21 721 231 HOH HOH . G 7 HOH A 22 722 146 HOH HOH . G 7 HOH A 23 723 98 HOH HOH . G 7 HOH A 24 724 212 HOH HOH . G 7 HOH A 25 725 66 HOH HOH . G 7 HOH A 26 726 116 HOH HOH . G 7 HOH A 27 727 123 HOH HOH . G 7 HOH A 28 728 162 HOH HOH . G 7 HOH A 29 729 216 HOH HOH . G 7 HOH A 30 730 153 HOH HOH . G 7 HOH A 31 731 175 HOH HOH . G 7 HOH A 32 732 23 HOH HOH . G 7 HOH A 33 733 44 HOH HOH . G 7 HOH A 34 734 235 HOH HOH . G 7 HOH A 35 735 258 HOH HOH . G 7 HOH A 36 736 222 HOH HOH . G 7 HOH A 37 737 193 HOH HOH . G 7 HOH A 38 738 268 HOH HOH . G 7 HOH A 39 739 43 HOH HOH . G 7 HOH A 40 740 33 HOH HOH . G 7 HOH A 41 741 252 HOH HOH . G 7 HOH A 42 742 130 HOH HOH . G 7 HOH A 43 743 7 HOH HOH . G 7 HOH A 44 744 54 HOH HOH . G 7 HOH A 45 745 211 HOH HOH . G 7 HOH A 46 746 34 HOH HOH . G 7 HOH A 47 747 170 HOH HOH . G 7 HOH A 48 748 10 HOH HOH . G 7 HOH A 49 749 73 HOH HOH . G 7 HOH A 50 750 22 HOH HOH . G 7 HOH A 51 751 38 HOH HOH . G 7 HOH A 52 752 117 HOH HOH . G 7 HOH A 53 753 9 HOH HOH . G 7 HOH A 54 754 64 HOH HOH . G 7 HOH A 55 755 41 HOH HOH . G 7 HOH A 56 756 181 HOH HOH . G 7 HOH A 57 757 49 HOH HOH . G 7 HOH A 58 758 202 HOH HOH . G 7 HOH A 59 759 13 HOH HOH . G 7 HOH A 60 760 79 HOH HOH . G 7 HOH A 61 761 85 HOH HOH . G 7 HOH A 62 762 48 HOH HOH . G 7 HOH A 63 763 245 HOH HOH . G 7 HOH A 64 764 67 HOH HOH . G 7 HOH A 65 765 14 HOH HOH . G 7 HOH A 66 766 35 HOH HOH . G 7 HOH A 67 767 20 HOH HOH . G 7 HOH A 68 768 32 HOH HOH . G 7 HOH A 69 769 101 HOH HOH . G 7 HOH A 70 770 58 HOH HOH . G 7 HOH A 71 771 31 HOH HOH . G 7 HOH A 72 772 24 HOH HOH . G 7 HOH A 73 773 151 HOH HOH . G 7 HOH A 74 774 163 HOH HOH . G 7 HOH A 75 775 191 HOH HOH . G 7 HOH A 76 776 5 HOH HOH . G 7 HOH A 77 777 15 HOH HOH . G 7 HOH A 78 778 100 HOH HOH . G 7 HOH A 79 779 74 HOH HOH . G 7 HOH A 80 780 243 HOH HOH . G 7 HOH A 81 781 129 HOH HOH . G 7 HOH A 82 782 195 HOH HOH . G 7 HOH A 83 783 122 HOH HOH . G 7 HOH A 84 784 72 HOH HOH . G 7 HOH A 85 785 8 HOH HOH . G 7 HOH A 86 786 272 HOH HOH . G 7 HOH A 87 787 51 HOH HOH . G 7 HOH A 88 788 143 HOH HOH . G 7 HOH A 89 789 46 HOH HOH . G 7 HOH A 90 790 26 HOH HOH . G 7 HOH A 91 791 197 HOH HOH . G 7 HOH A 92 792 69 HOH HOH . G 7 HOH A 93 793 95 HOH HOH . G 7 HOH A 94 794 21 HOH HOH . G 7 HOH A 95 795 62 HOH HOH . G 7 HOH A 96 796 155 HOH HOH . G 7 HOH A 97 797 257 HOH HOH . G 7 HOH A 98 798 84 HOH HOH . G 7 HOH A 99 799 244 HOH HOH . G 7 HOH A 100 800 157 HOH HOH . G 7 HOH A 101 801 115 HOH HOH . G 7 HOH A 102 802 88 HOH HOH . G 7 HOH A 103 803 30 HOH HOH . G 7 HOH A 104 804 161 HOH HOH . G 7 HOH A 105 805 4 HOH HOH . G 7 HOH A 106 806 255 HOH HOH . G 7 HOH A 107 807 96 HOH HOH . G 7 HOH A 108 808 92 HOH HOH . G 7 HOH A 109 809 134 HOH HOH . G 7 HOH A 110 810 68 HOH HOH . G 7 HOH A 111 811 36 HOH HOH . G 7 HOH A 112 812 124 HOH HOH . G 7 HOH A 113 813 86 HOH HOH . G 7 HOH A 114 814 87 HOH HOH . G 7 HOH A 115 815 99 HOH HOH . G 7 HOH A 116 816 107 HOH HOH . G 7 HOH A 117 817 173 HOH HOH . G 7 HOH A 118 818 59 HOH HOH . G 7 HOH A 119 819 112 HOH HOH . G 7 HOH A 120 820 118 HOH HOH . G 7 HOH A 121 821 2 HOH HOH . G 7 HOH A 122 822 114 HOH HOH . G 7 HOH A 123 823 82 HOH HOH . G 7 HOH A 124 824 97 HOH HOH . G 7 HOH A 125 825 57 HOH HOH . G 7 HOH A 126 826 177 HOH HOH . G 7 HOH A 127 827 11 HOH HOH . G 7 HOH A 128 828 19 HOH HOH . G 7 HOH A 129 829 1 HOH HOH . G 7 HOH A 130 830 93 HOH HOH . G 7 HOH A 131 831 12 HOH HOH . G 7 HOH A 132 832 144 HOH HOH . G 7 HOH A 133 833 125 HOH HOH . G 7 HOH A 134 834 140 HOH HOH . G 7 HOH A 135 835 16 HOH HOH . G 7 HOH A 136 836 232 HOH HOH . G 7 HOH A 137 837 273 HOH HOH . G 7 HOH A 138 838 160 HOH HOH . G 7 HOH A 139 839 246 HOH HOH . G 7 HOH A 140 840 40 HOH HOH . G 7 HOH A 141 841 152 HOH HOH . G 7 HOH A 142 842 29 HOH HOH . G 7 HOH A 143 843 227 HOH HOH . G 7 HOH A 144 844 106 HOH HOH . G 7 HOH A 145 845 75 HOH HOH . G 7 HOH A 146 846 45 HOH HOH . G 7 HOH A 147 847 53 HOH HOH . G 7 HOH A 148 848 109 HOH HOH . G 7 HOH A 149 849 127 HOH HOH . G 7 HOH A 150 850 47 HOH HOH . G 7 HOH A 151 851 165 HOH HOH . G 7 HOH A 152 852 180 HOH HOH . G 7 HOH A 153 853 269 HOH HOH . G 7 HOH A 154 854 91 HOH HOH . G 7 HOH A 155 855 148 HOH HOH . G 7 HOH A 156 856 166 HOH HOH . G 7 HOH A 157 857 194 HOH HOH . G 7 HOH A 158 858 52 HOH HOH . G 7 HOH A 159 859 218 HOH HOH . G 7 HOH A 160 860 226 HOH HOH . G 7 HOH A 161 861 137 HOH HOH . G 7 HOH A 162 862 159 HOH HOH . G 7 HOH A 163 863 199 HOH HOH . G 7 HOH A 164 864 241 HOH HOH . G 7 HOH A 165 865 158 HOH HOH . G 7 HOH A 166 866 18 HOH HOH . G 7 HOH A 167 867 147 HOH HOH . G 7 HOH A 168 868 233 HOH HOH . G 7 HOH A 169 869 236 HOH HOH . G 7 HOH A 170 870 250 HOH HOH . G 7 HOH A 171 871 237 HOH HOH . G 7 HOH A 172 872 145 HOH HOH . G 7 HOH A 173 873 207 HOH HOH . G 7 HOH A 174 874 102 HOH HOH . G 7 HOH A 175 875 133 HOH HOH . G 7 HOH A 176 876 220 HOH HOH . G 7 HOH A 177 877 205 HOH HOH . G 7 HOH A 178 878 119 HOH HOH . G 7 HOH A 179 879 217 HOH HOH . G 7 HOH A 180 880 61 HOH HOH . G 7 HOH A 181 881 271 HOH HOH . G 7 HOH A 182 882 154 HOH HOH . G 7 HOH A 183 883 103 HOH HOH . G 7 HOH A 184 884 274 HOH HOH . G 7 HOH A 185 885 185 HOH HOH . G 7 HOH A 186 886 76 HOH HOH . G 7 HOH A 187 887 83 HOH HOH . G 7 HOH A 188 888 265 HOH HOH . G 7 HOH A 189 889 176 HOH HOH . G 7 HOH A 190 890 213 HOH HOH . G 7 HOH A 191 891 149 HOH HOH . G 7 HOH A 192 892 120 HOH HOH . G 7 HOH A 193 893 81 HOH HOH . G 7 HOH A 194 894 182 HOH HOH . G 7 HOH A 195 895 172 HOH HOH . G 7 HOH A 196 896 132 HOH HOH . G 7 HOH A 197 897 78 HOH HOH . G 7 HOH A 198 898 196 HOH HOH . G 7 HOH A 199 899 42 HOH HOH . G 7 HOH A 200 900 104 HOH HOH . G 7 HOH A 201 901 139 HOH HOH . G 7 HOH A 202 902 131 HOH HOH . G 7 HOH A 203 903 156 HOH HOH . G 7 HOH A 204 904 55 HOH HOH . G 7 HOH A 205 905 164 HOH HOH . G 7 HOH A 206 906 184 HOH HOH . G 7 HOH A 207 907 253 HOH HOH . G 7 HOH A 208 908 215 HOH HOH . G 7 HOH A 209 909 229 HOH HOH . G 7 HOH A 210 910 70 HOH HOH . G 7 HOH A 211 911 204 HOH HOH . G 7 HOH A 212 912 25 HOH HOH . G 7 HOH A 213 913 90 HOH HOH . G 7 HOH A 214 914 89 HOH HOH . G 7 HOH A 215 915 251 HOH HOH . G 7 HOH A 216 916 248 HOH HOH . G 7 HOH A 217 917 206 HOH HOH . G 7 HOH A 218 918 108 HOH HOH . G 7 HOH A 219 919 136 HOH HOH . G 7 HOH A 220 920 203 HOH HOH . G 7 HOH A 221 921 56 HOH HOH . G 7 HOH A 222 922 190 HOH HOH . G 7 HOH A 223 923 94 HOH HOH . G 7 HOH A 224 924 71 HOH HOH . G 7 HOH A 225 925 171 HOH HOH . G 7 HOH A 226 926 210 HOH HOH . G 7 HOH A 227 927 242 HOH HOH . G 7 HOH A 228 928 234 HOH HOH . G 7 HOH A 229 929 214 HOH HOH . G 7 HOH A 230 930 126 HOH HOH . G 7 HOH A 231 931 113 HOH HOH . G 7 HOH A 232 932 225 HOH HOH . G 7 HOH A 233 933 238 HOH HOH . G 7 HOH A 234 934 219 HOH HOH . G 7 HOH A 235 935 198 HOH HOH . G 7 HOH A 236 936 169 HOH HOH . G 7 HOH A 237 937 65 HOH HOH . G 7 HOH A 238 938 200 HOH HOH . G 7 HOH A 239 939 128 HOH HOH . G 7 HOH A 240 940 247 HOH HOH . G 7 HOH A 241 941 240 HOH HOH . G 7 HOH A 242 942 224 HOH HOH . G 7 HOH A 243 943 189 HOH HOH . G 7 HOH A 244 944 179 HOH HOH . G 7 HOH A 245 945 223 HOH HOH . G 7 HOH A 246 946 230 HOH HOH . G 7 HOH A 247 947 186 HOH HOH . G 7 HOH A 248 948 249 HOH HOH . G 7 HOH A 249 949 201 HOH HOH . G 7 HOH A 250 950 228 HOH HOH . G 7 HOH A 251 951 178 HOH HOH . G 7 HOH A 252 952 262 HOH HOH . G 7 HOH A 253 953 135 HOH HOH . G 7 HOH A 254 954 260 HOH HOH . G 7 HOH A 255 955 187 HOH HOH . G 7 HOH A 256 956 141 HOH HOH . G 7 HOH A 257 957 50 HOH HOH . G 7 HOH A 258 958 261 HOH HOH . G 7 HOH A 259 959 264 HOH HOH . G 7 HOH A 260 960 263 HOH HOH . G 7 HOH A 261 961 28 HOH HOH . G 7 HOH A 262 962 174 HOH HOH . G 7 HOH A 263 963 188 HOH HOH . G 7 HOH A 264 964 266 HOH HOH . G 7 HOH A 265 965 275 HOH HOH . G 7 HOH A 266 966 259 HOH HOH . G 7 HOH A 267 967 183 HOH HOH . G 7 HOH A 268 968 80 HOH HOH . G 7 HOH A 269 969 111 HOH HOH . G 7 HOH A 270 970 239 HOH HOH . G 7 HOH A 271 971 168 HOH HOH . G 7 HOH A 272 972 150 HOH HOH . G 7 HOH A 273 973 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 6.962 4.115 16.177 1 41.79 ? C1 GOL 605 A 1 HETATM 2 O O1 GOL . . . F 6 5.548 4.332 16.043 1 40.8 ? O1 GOL 605 A 1 HETATM 3 C C2 GOL . . . F 6 7.663 5.338 16.763 1 41.5 ? C2 GOL 605 A 1 HETATM 4 O O2 GOL . . . F 6 7.104 6.519 16.172 1 38.99 ? O2 GOL 605 A 1 HETATM 5 C C3 GOL . . . F 6 7.502 5.415 18.287 1 39.97 ? C3 GOL 605 A 1 HETATM 6 O O3 GOL . . . F 6 8.438 4.631 19.038 1 40.99 ? O3 GOL 605 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #