data_5ZO4 # _model_server_result.job_id pF0qiK885R_8uZfcc6qmKA _model_server_result.datetime_utc '2024-10-19 23:56:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zo4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5ZO4 # _exptl.entry_id 5ZO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZO4 _cell.length_a 122.01 _cell.length_b 122.01 _cell.length_c 148.808 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 244.02 244.02 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 244.02 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 244.02 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 31 A ASP 27 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? metalc ? metalc2 A OE1 GLU 33 A GLU 29 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc3 A OE2 GLU 33 A GLU 29 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc4 A OD2 ASP 90 A ASP 86 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 A OD2 ASP 161 A ASP 157 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc6 B OD1 ASP 31 B ASP 27 1_555 I MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc7 B OE2 GLU 33 B GLU 29 1_555 H MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 B OD2 ASP 90 B ASP 86 1_555 I MN MN . B MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc9 B OD2 ASP 161 B ASP 157 1_555 H MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZO4 _atom_sites.fract_transf_matrix[1][1] 0.008196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 2 SO4 SO4 . D 3 MN A 1 302 3 MN MN . E 3 MN A 1 303 4 MN MN . F 2 SO4 B 1 301 1 SO4 SO4 . G 2 SO4 B 1 302 3 SO4 SO4 . H 3 MN B 1 303 1 MN MN . I 3 MN B 1 304 2 MN MN . J 4 HOH A 1 401 14 HOH HOH . J 4 HOH A 2 402 19 HOH HOH . J 4 HOH A 3 403 22 HOH HOH . J 4 HOH A 4 404 9 HOH HOH . J 4 HOH A 5 405 24 HOH HOH . J 4 HOH A 6 406 6 HOH HOH . J 4 HOH A 7 407 5 HOH HOH . J 4 HOH A 8 408 18 HOH HOH . J 4 HOH A 9 409 27 HOH HOH . J 4 HOH A 10 410 16 HOH HOH . J 4 HOH A 11 411 21 HOH HOH . J 4 HOH A 12 412 3 HOH HOH . J 4 HOH A 13 413 29 HOH HOH . K 4 HOH B 1 401 7 HOH HOH . K 4 HOH B 2 402 26 HOH HOH . K 4 HOH B 3 403 11 HOH HOH . K 4 HOH B 4 404 23 HOH HOH . K 4 HOH B 5 405 10 HOH HOH . K 4 HOH B 6 406 13 HOH HOH . K 4 HOH B 7 407 8 HOH HOH . K 4 HOH B 8 408 12 HOH HOH . K 4 HOH B 9 409 20 HOH HOH . K 4 HOH B 10 410 15 HOH HOH . K 4 HOH B 11 411 4 HOH HOH . K 4 HOH B 12 412 2 HOH HOH . K 4 HOH B 13 413 17 HOH HOH . K 4 HOH B 14 414 25 HOH HOH . K 4 HOH B 15 415 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 146.945 _atom_site.Cartn_y 126.563 _atom_site.Cartn_z 202.145 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 80.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 457 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #