data_5ZO7
#
_model_server_result.job_id            jvQ-9oPbGZlKhQYBo_i0Iw 
_model_server_result.datetime_utc      '2024-10-22 03:38:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zo7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":600}' 
#
_entry.id    5ZO7 
#
_exptl.entry_id    5ZO7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.2 
_cell.angle_gamma         90 
_cell.entry_id            5ZO7 
_cell.length_a            158.347 
_cell.length_b            50.58 
_cell.length_c            93.689 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZO7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 103 A THR 112 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc2 C O1B ADP . A ADP 600 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc3 D MG MG . A MG 601 1_555 K O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc4 D MG MG . A MG 601 1_555 K O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc5 G O2B ADP . B ADP 600 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc6 H MG MG . B MG 601 1_555 L O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 59 n n 
PB O2B ADP sing 60 n n 
PB O3B ADP sing 61 n n 
PB O3A ADP sing 62 n n 
O2B HOB2 ADP sing 63 n n 
O3B HOB3 ADP sing 64 n n 
PA O1A ADP doub 65 n n 
PA O2A ADP sing 66 n n 
PA O3A ADP sing 67 n n 
PA O5' ADP sing 68 n n 
O2A HOA2 ADP sing 69 n n 
O5' C5' ADP sing 70 n n 
C5' C4' ADP sing 71 n n 
C5' "H5'1" ADP sing 72 n n 
C5' "H5'2" ADP sing 73 n n 
C4' O4' ADP sing 74 n n 
C4' C3' ADP sing 75 n n 
C4' H4' ADP sing 76 n n 
O4' C1' ADP sing 77 n n 
C3' O3' ADP sing 78 n n 
C3' C2' ADP sing 79 n n 
C3' H3' ADP sing 80 n n 
O3' HO3' ADP sing 81 n n 
C2' O2' ADP sing 82 n n 
C2' C1' ADP sing 83 n n 
C2' H2' ADP sing 84 n n 
O2' HO2' ADP sing 85 n n 
C1' N9 ADP sing 86 n n 
C1' H1' ADP sing 87 n n 
N9 C8 ADP sing 88 n y 
N9 C4 ADP sing 89 n y 
C8 N7 ADP doub 90 n y 
C8 H8 ADP sing 91 n n 
N7 C5 ADP sing 92 n y 
C5 C6 ADP sing 93 n y 
C5 C4 ADP doub 94 n y 
C6 N6 ADP sing 95 n n 
C6 N1 ADP doub 96 n y 
N6 HN61 ADP sing 97 n n 
N6 HN62 ADP sing 98 n n 
N1 C2 ADP sing 99 n y 
C2 N3 ADP doub 100 n y 
C2 H2 ADP sing 101 n n 
N3 C4 ADP sing 102 n y 
#
_atom_sites.entry_id                     5ZO7 
_atom_sites.fract_transf_matrix[1][1]    0.006315 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001366 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019771 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 600 600 ADP ADP . 
D 3 MG A 1 601 601 MG MG . 
E 4 5C5 A 1 602 602 5C5 5C5 . 
F 5 SO4 A 1 603 603 SO4 SO4 . 
G 2 ADP B 1 600 600 ADP ADP . 
H 3 MG B 1 601 601 MG MG . 
I 4 5C5 B 1 602 602 5C5 5C5 . 
J 5 SO4 B 1 603 603 SO4 SO4 . 
K 6 HOH A 1 701 46 HOH HOH . 
K 6 HOH A 2 702 8 HOH HOH . 
K 6 HOH A 3 703 2 HOH HOH . 
K 6 HOH A 4 704 4 HOH HOH . 
K 6 HOH A 5 705 63 HOH HOH . 
K 6 HOH A 6 706 22 HOH HOH . 
K 6 HOH A 7 707 9 HOH HOH . 
K 6 HOH A 8 708 23 HOH HOH . 
K 6 HOH A 9 709 19 HOH HOH . 
K 6 HOH A 10 710 28 HOH HOH . 
K 6 HOH A 11 711 49 HOH HOH . 
K 6 HOH A 12 712 67 HOH HOH . 
K 6 HOH A 13 713 60 HOH HOH . 
K 6 HOH A 14 714 47 HOH HOH . 
K 6 HOH A 15 715 55 HOH HOH . 
K 6 HOH A 16 716 53 HOH HOH . 
K 6 HOH A 17 717 10 HOH HOH . 
K 6 HOH A 18 718 65 HOH HOH . 
K 6 HOH A 19 719 6 HOH HOH . 
K 6 HOH A 20 720 15 HOH HOH . 
K 6 HOH A 21 721 40 HOH HOH . 
K 6 HOH A 22 722 17 HOH HOH . 
K 6 HOH A 23 723 25 HOH HOH . 
K 6 HOH A 24 724 29 HOH HOH . 
K 6 HOH A 25 725 12 HOH HOH . 
K 6 HOH A 26 726 16 HOH HOH . 
K 6 HOH A 27 727 34 HOH HOH . 
K 6 HOH A 28 728 21 HOH HOH . 
K 6 HOH A 29 729 37 HOH HOH . 
K 6 HOH A 30 730 48 HOH HOH . 
K 6 HOH A 31 731 7 HOH HOH . 
K 6 HOH A 32 732 1 HOH HOH . 
K 6 HOH A 33 733 66 HOH HOH . 
K 6 HOH A 34 734 20 HOH HOH . 
K 6 HOH A 35 735 51 HOH HOH . 
K 6 HOH A 36 736 13 HOH HOH . 
K 6 HOH A 37 737 72 HOH HOH . 
K 6 HOH A 38 738 52 HOH HOH . 
K 6 HOH A 39 739 18 HOH HOH . 
K 6 HOH A 40 740 35 HOH HOH . 
K 6 HOH A 41 741 27 HOH HOH . 
K 6 HOH A 42 742 56 HOH HOH . 
K 6 HOH A 43 743 42 HOH HOH . 
K 6 HOH A 44 744 32 HOH HOH . 
K 6 HOH A 45 745 33 HOH HOH . 
K 6 HOH A 46 746 36 HOH HOH . 
K 6 HOH A 47 747 3 HOH HOH . 
L 6 HOH B 1 701 31 HOH HOH . 
L 6 HOH B 2 702 26 HOH HOH . 
L 6 HOH B 3 703 54 HOH HOH . 
L 6 HOH B 4 704 11 HOH HOH . 
L 6 HOH B 5 705 62 HOH HOH . 
L 6 HOH B 6 706 69 HOH HOH . 
L 6 HOH B 7 707 14 HOH HOH . 
L 6 HOH B 8 708 59 HOH HOH . 
L 6 HOH B 9 709 70 HOH HOH . 
L 6 HOH B 10 710 58 HOH HOH . 
L 6 HOH B 11 711 64 HOH HOH . 
L 6 HOH B 12 712 68 HOH HOH . 
L 6 HOH B 13 713 41 HOH HOH . 
L 6 HOH B 14 714 71 HOH HOH . 
L 6 HOH B 15 715 61 HOH HOH . 
L 6 HOH B 16 716 50 HOH HOH . 
L 6 HOH B 17 717 43 HOH HOH . 
L 6 HOH B 18 718 30 HOH HOH . 
L 6 HOH B 19 719 73 HOH HOH . 
L 6 HOH B 20 720 57 HOH HOH . 
L 6 HOH B 21 721 44 HOH HOH . 
L 6 HOH B 22 722 5 HOH HOH . 
L 6 HOH B 23 723 24 HOH HOH . 
L 6 HOH B 24 724 38 HOH HOH . 
L 6 HOH B 25 725 45 HOH HOH . 
L 6 HOH B 26 726 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 2 29.135 -8.2 -0.042 1 33.6 ? PB ADP 600 A 1 
HETATM 2 O O1B ADP . . . C 2 28.749 -7.174 -1.097 1 31.74 ? O1B ADP 600 A 1 
HETATM 3 O O2B ADP . . . C 2 28.45 -8.141 1.28 1 31.86 ? O2B ADP 600 A 1 
HETATM 4 O O3B ADP . . . C 2 30.65 -8.328 0.149 1 34.48 ? O3B ADP 600 A 1 
HETATM 5 P PA ADP . . . C 2 28.333 -9.964 -2.076 1 30.99 ? PA ADP 600 A 1 
HETATM 6 O O1A ADP . . . C 2 29.474 -9.826 -3.02 1 31.82 ? O1A ADP 600 A 1 
HETATM 7 O O2A ADP . . . C 2 27.035 -9.276 -2.458 1 32.52 ? O2A ADP 600 A 1 
HETATM 8 O O3A ADP . . . C 2 28.725 -9.663 -0.544 1 30.5 ? O3A ADP 600 A 1 
HETATM 9 O O5' ADP . . . C 2 28.002 -11.524 -1.974 1 31.52 ? O5' ADP 600 A 1 
HETATM 10 C C5' ADP . . . C 2 28.927 -12.494 -1.511 1 30.61 ? C5' ADP 600 A 1 
HETATM 11 C C4' ADP . . . C 2 28.592 -13.792 -2.229 1 31.99 ? C4' ADP 600 A 1 
HETATM 12 O O4' ADP . . . C 2 27.557 -14.488 -1.513 1 31.6 ? O4' ADP 600 A 1 
HETATM 13 C C3' ADP . . . C 2 28.094 -13.574 -3.656 1 32.21 ? C3' ADP 600 A 1 
HETATM 14 O O3' ADP . . . C 2 28.586 -14.545 -4.535 1 33.21 ? O3' ADP 600 A 1 
HETATM 15 C C2' ADP . . . C 2 26.631 -13.873 -3.6 1 33.15 ? C2' ADP 600 A 1 
HETATM 16 O O2' ADP . . . C 2 26.205 -14.508 -4.787 1 35.06 ? O2' ADP 600 A 1 
HETATM 17 C C1' ADP . . . C 2 26.48 -14.773 -2.392 1 33.25 ? C1' ADP 600 A 1 
HETATM 18 N N9 ADP . . . C 2 25.269 -14.427 -1.633 1 34.34 ? N9 ADP 600 A 1 
HETATM 19 C C8 ADP . . . C 2 25.171 -13.336 -0.826 1 33.78 ? C8 ADP 600 A 1 
HETATM 20 N N7 ADP . . . C 2 23.966 -13.278 -0.225 1 33.71 ? N7 ADP 600 A 1 
HETATM 21 C C5 ADP . . . C 2 23.3 -14.346 -0.658 1 35.05 ? C5 ADP 600 A 1 
HETATM 22 C C6 ADP . . . C 2 21.966 -14.851 -0.404 1 35.89 ? C6 ADP 600 A 1 
HETATM 23 N N6 ADP . . . C 2 21.221 -14.129 0.417 1 35.6 ? N6 ADP 600 A 1 
HETATM 24 N N1 ADP . . . C 2 21.579 -15.986 -1.038 1 38.56 ? N1 ADP 600 A 1 
HETATM 25 C C2 ADP . . . C 2 22.387 -16.668 -1.894 1 38.56 ? C2 ADP 600 A 1 
HETATM 26 N N3 ADP . . . C 2 23.649 -16.25 -2.173 1 37.66 ? N3 ADP 600 A 1 
HETATM 27 C C4 ADP . . . C 2 24.136 -15.11 -1.596 1 35.64 ? C4 ADP 600 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#