data_5ZO7 # _model_server_result.job_id OEkX0_25SfyYBzQx24_IUQ _model_server_result.datetime_utc '2024-10-22 03:42:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zo7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 5ZO7 # _exptl.entry_id 5ZO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.2 _cell.angle_gamma 90 _cell.entry_id 5ZO7 _cell.length_a 158.347 _cell.length_b 50.58 _cell.length_c 93.689 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 103 A THR 112 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 C O1B ADP . A ADP 600 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 D MG MG . A MG 601 1_555 K O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 D MG MG . A MG 601 1_555 K O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc5 G O2B ADP . B ADP 600 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 H MG MG . B MG 601 1_555 L O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZO7 _atom_sites.fract_transf_matrix[1][1] 0.006315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001366 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 600 600 ADP ADP . D 3 MG A 1 601 601 MG MG . E 4 5C5 A 1 602 602 5C5 5C5 . F 5 SO4 A 1 603 603 SO4 SO4 . G 2 ADP B 1 600 600 ADP ADP . H 3 MG B 1 601 601 MG MG . I 4 5C5 B 1 602 602 5C5 5C5 . J 5 SO4 B 1 603 603 SO4 SO4 . K 6 HOH A 1 701 46 HOH HOH . K 6 HOH A 2 702 8 HOH HOH . K 6 HOH A 3 703 2 HOH HOH . K 6 HOH A 4 704 4 HOH HOH . K 6 HOH A 5 705 63 HOH HOH . K 6 HOH A 6 706 22 HOH HOH . K 6 HOH A 7 707 9 HOH HOH . K 6 HOH A 8 708 23 HOH HOH . K 6 HOH A 9 709 19 HOH HOH . K 6 HOH A 10 710 28 HOH HOH . K 6 HOH A 11 711 49 HOH HOH . K 6 HOH A 12 712 67 HOH HOH . K 6 HOH A 13 713 60 HOH HOH . K 6 HOH A 14 714 47 HOH HOH . K 6 HOH A 15 715 55 HOH HOH . K 6 HOH A 16 716 53 HOH HOH . K 6 HOH A 17 717 10 HOH HOH . K 6 HOH A 18 718 65 HOH HOH . K 6 HOH A 19 719 6 HOH HOH . K 6 HOH A 20 720 15 HOH HOH . K 6 HOH A 21 721 40 HOH HOH . K 6 HOH A 22 722 17 HOH HOH . K 6 HOH A 23 723 25 HOH HOH . K 6 HOH A 24 724 29 HOH HOH . K 6 HOH A 25 725 12 HOH HOH . K 6 HOH A 26 726 16 HOH HOH . K 6 HOH A 27 727 34 HOH HOH . K 6 HOH A 28 728 21 HOH HOH . K 6 HOH A 29 729 37 HOH HOH . K 6 HOH A 30 730 48 HOH HOH . K 6 HOH A 31 731 7 HOH HOH . K 6 HOH A 32 732 1 HOH HOH . K 6 HOH A 33 733 66 HOH HOH . K 6 HOH A 34 734 20 HOH HOH . K 6 HOH A 35 735 51 HOH HOH . K 6 HOH A 36 736 13 HOH HOH . K 6 HOH A 37 737 72 HOH HOH . K 6 HOH A 38 738 52 HOH HOH . K 6 HOH A 39 739 18 HOH HOH . K 6 HOH A 40 740 35 HOH HOH . K 6 HOH A 41 741 27 HOH HOH . K 6 HOH A 42 742 56 HOH HOH . K 6 HOH A 43 743 42 HOH HOH . K 6 HOH A 44 744 32 HOH HOH . K 6 HOH A 45 745 33 HOH HOH . K 6 HOH A 46 746 36 HOH HOH . K 6 HOH A 47 747 3 HOH HOH . L 6 HOH B 1 701 31 HOH HOH . L 6 HOH B 2 702 26 HOH HOH . L 6 HOH B 3 703 54 HOH HOH . L 6 HOH B 4 704 11 HOH HOH . L 6 HOH B 5 705 62 HOH HOH . L 6 HOH B 6 706 69 HOH HOH . L 6 HOH B 7 707 14 HOH HOH . L 6 HOH B 8 708 59 HOH HOH . L 6 HOH B 9 709 70 HOH HOH . L 6 HOH B 10 710 58 HOH HOH . L 6 HOH B 11 711 64 HOH HOH . L 6 HOH B 12 712 68 HOH HOH . L 6 HOH B 13 713 41 HOH HOH . L 6 HOH B 14 714 71 HOH HOH . L 6 HOH B 15 715 61 HOH HOH . L 6 HOH B 16 716 50 HOH HOH . L 6 HOH B 17 717 43 HOH HOH . L 6 HOH B 18 718 30 HOH HOH . L 6 HOH B 19 719 73 HOH HOH . L 6 HOH B 20 720 57 HOH HOH . L 6 HOH B 21 721 44 HOH HOH . L 6 HOH B 22 722 5 HOH HOH . L 6 HOH B 23 723 24 HOH HOH . L 6 HOH B 24 724 38 HOH HOH . L 6 HOH B 25 725 45 HOH HOH . L 6 HOH B 26 726 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 38.566 _atom_site.Cartn_y -9.573 _atom_site.Cartn_z 47.518 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #