data_5ZO7
#
_model_server_result.job_id            -sAf2dQX229CjgPrV8nJSA 
_model_server_result.datetime_utc      '2024-10-22 03:22:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zo7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":602}' 
#
_entry.id    5ZO7 
#
_exptl.entry_id    5ZO7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              419.536 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-azanyl-3-[[2-(4-methoxyphenyl)-2-tricyclo[9.4.0.0^{3,8}]pentadeca-1(11),3,5,7,12,14-hexaenyl]sulfanyl]propanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.2 
_cell.angle_gamma         90 
_cell.entry_id            5ZO7 
_cell.length_a            158.347 
_cell.length_b            50.58 
_cell.length_c            93.689 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZO7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 103 A THR 112 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc2 C O1B ADP . A ADP 600 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc3 D MG MG . A MG 601 1_555 K O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc4 D MG MG . A MG 601 1_555 K O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc5 G O2B ADP . B ADP 600 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc6 H MG MG . B MG 601 1_555 L O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C25 H25 N O3 S' 
_chem_comp.formula_weight    419.536 
_chem_comp.id                5C5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-azanyl-3-[[2-(4-methoxyphenyl)-2-tricyclo[9.4.0.0^{3,8}]pentadeca-1(11),3,5,7,12,14-hexaenyl]sulfanyl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 C13 5C5 doub 1 n y 
C14 C15 5C5 sing 2 n y 
C13 C12 5C5 sing 3 n y 
C15 C16 5C5 doub 4 n y 
C12 C11 5C5 sing 5 n n 
C12 C17 5C5 doub 6 n y 
C11 C10 5C5 sing 7 n n 
C10 C9 5C5 sing 8 n n 
C16 C17 5C5 sing 9 n y 
C17 C3 5C5 sing 10 n n 
C8 C9 5C5 doub 11 n y 
C8 C7 5C5 sing 12 n y 
C9 C4 5C5 sing 13 n y 
C7 C6 5C5 doub 14 n y 
C4 C3 5C5 sing 15 n n 
C4 C5 5C5 doub 16 n y 
C3 C18 5C5 sing 17 n n 
C3 S 5C5 sing 18 n n 
C6 C5 5C5 sing 19 n y 
C24 C18 5C5 doub 20 n y 
C24 C23 5C5 sing 21 n y 
C18 C19 5C5 sing 22 n y 
C23 C21 5C5 doub 23 n y 
S C2 5C5 sing 24 n n 
O2 C 5C5 doub 25 n n 
C2 C1 5C5 sing 26 n n 
C19 C20 5C5 doub 27 n y 
C21 C20 5C5 sing 28 n y 
C21 O1 5C5 sing 29 n n 
C C1 5C5 sing 30 n n 
C O 5C5 sing 31 n n 
C1 N 5C5 sing 32 n n 
O1 C22 5C5 sing 33 n n 
O H1 5C5 sing 34 n n 
C1 H2 5C5 sing 35 n n 
N H3 5C5 sing 36 n n 
N H4 5C5 sing 37 n n 
C2 H6 5C5 sing 38 n n 
C2 H7 5C5 sing 39 n n 
C24 H8 5C5 sing 40 n n 
C23 H9 5C5 sing 41 n n 
C22 H10 5C5 sing 42 n n 
C22 H11 5C5 sing 43 n n 
C22 H12 5C5 sing 44 n n 
C20 H13 5C5 sing 45 n n 
C19 H14 5C5 sing 46 n n 
C16 H15 5C5 sing 47 n n 
C15 H16 5C5 sing 48 n n 
C14 H17 5C5 sing 49 n n 
C13 H18 5C5 sing 50 n n 
C11 H19 5C5 sing 51 n n 
C10 H20 5C5 sing 52 n n 
C8 H21 5C5 sing 53 n n 
C7 H22 5C5 sing 54 n n 
C6 H23 5C5 sing 55 n n 
C5 H24 5C5 sing 56 n n 
C11 H5 5C5 sing 57 n n 
C10 H25 5C5 sing 58 n n 
#
_atom_sites.entry_id                     5ZO7 
_atom_sites.fract_transf_matrix[1][1]    0.006315 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001366 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019771 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 600 600 ADP ADP . 
D 3 MG A 1 601 601 MG MG . 
E 4 5C5 A 1 602 602 5C5 5C5 . 
F 5 SO4 A 1 603 603 SO4 SO4 . 
G 2 ADP B 1 600 600 ADP ADP . 
H 3 MG B 1 601 601 MG MG . 
I 4 5C5 B 1 602 602 5C5 5C5 . 
J 5 SO4 B 1 603 603 SO4 SO4 . 
K 6 HOH A 1 701 46 HOH HOH . 
K 6 HOH A 2 702 8 HOH HOH . 
K 6 HOH A 3 703 2 HOH HOH . 
K 6 HOH A 4 704 4 HOH HOH . 
K 6 HOH A 5 705 63 HOH HOH . 
K 6 HOH A 6 706 22 HOH HOH . 
K 6 HOH A 7 707 9 HOH HOH . 
K 6 HOH A 8 708 23 HOH HOH . 
K 6 HOH A 9 709 19 HOH HOH . 
K 6 HOH A 10 710 28 HOH HOH . 
K 6 HOH A 11 711 49 HOH HOH . 
K 6 HOH A 12 712 67 HOH HOH . 
K 6 HOH A 13 713 60 HOH HOH . 
K 6 HOH A 14 714 47 HOH HOH . 
K 6 HOH A 15 715 55 HOH HOH . 
K 6 HOH A 16 716 53 HOH HOH . 
K 6 HOH A 17 717 10 HOH HOH . 
K 6 HOH A 18 718 65 HOH HOH . 
K 6 HOH A 19 719 6 HOH HOH . 
K 6 HOH A 20 720 15 HOH HOH . 
K 6 HOH A 21 721 40 HOH HOH . 
K 6 HOH A 22 722 17 HOH HOH . 
K 6 HOH A 23 723 25 HOH HOH . 
K 6 HOH A 24 724 29 HOH HOH . 
K 6 HOH A 25 725 12 HOH HOH . 
K 6 HOH A 26 726 16 HOH HOH . 
K 6 HOH A 27 727 34 HOH HOH . 
K 6 HOH A 28 728 21 HOH HOH . 
K 6 HOH A 29 729 37 HOH HOH . 
K 6 HOH A 30 730 48 HOH HOH . 
K 6 HOH A 31 731 7 HOH HOH . 
K 6 HOH A 32 732 1 HOH HOH . 
K 6 HOH A 33 733 66 HOH HOH . 
K 6 HOH A 34 734 20 HOH HOH . 
K 6 HOH A 35 735 51 HOH HOH . 
K 6 HOH A 36 736 13 HOH HOH . 
K 6 HOH A 37 737 72 HOH HOH . 
K 6 HOH A 38 738 52 HOH HOH . 
K 6 HOH A 39 739 18 HOH HOH . 
K 6 HOH A 40 740 35 HOH HOH . 
K 6 HOH A 41 741 27 HOH HOH . 
K 6 HOH A 42 742 56 HOH HOH . 
K 6 HOH A 43 743 42 HOH HOH . 
K 6 HOH A 44 744 32 HOH HOH . 
K 6 HOH A 45 745 33 HOH HOH . 
K 6 HOH A 46 746 36 HOH HOH . 
K 6 HOH A 47 747 3 HOH HOH . 
L 6 HOH B 1 701 31 HOH HOH . 
L 6 HOH B 2 702 26 HOH HOH . 
L 6 HOH B 3 703 54 HOH HOH . 
L 6 HOH B 4 704 11 HOH HOH . 
L 6 HOH B 5 705 62 HOH HOH . 
L 6 HOH B 6 706 69 HOH HOH . 
L 6 HOH B 7 707 14 HOH HOH . 
L 6 HOH B 8 708 59 HOH HOH . 
L 6 HOH B 9 709 70 HOH HOH . 
L 6 HOH B 10 710 58 HOH HOH . 
L 6 HOH B 11 711 64 HOH HOH . 
L 6 HOH B 12 712 68 HOH HOH . 
L 6 HOH B 13 713 41 HOH HOH . 
L 6 HOH B 14 714 71 HOH HOH . 
L 6 HOH B 15 715 61 HOH HOH . 
L 6 HOH B 16 716 50 HOH HOH . 
L 6 HOH B 17 717 43 HOH HOH . 
L 6 HOH B 18 718 30 HOH HOH . 
L 6 HOH B 19 719 73 HOH HOH . 
L 6 HOH B 20 720 57 HOH HOH . 
L 6 HOH B 21 721 44 HOH HOH . 
L 6 HOH B 22 722 5 HOH HOH . 
L 6 HOH B 23 723 24 HOH HOH . 
L 6 HOH B 24 724 38 HOH HOH . 
L 6 HOH B 25 725 45 HOH HOH . 
L 6 HOH B 26 726 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 5C5 . . . E 4 28.224 -5.798 -10.973 1 39.83 ? O2 5C5 602 A 1 
HETATM 2 C C 5C5 . . . E 4 27.646 -5.815 -9.886 1 37.67 ? C 5C5 602 A 1 
HETATM 3 O O 5C5 . . . E 4 28.229 -5.269 -8.83 1 36.59 ? O 5C5 602 A 1 
HETATM 4 C C1 5C5 . . . E 4 26.296 -6.441 -9.755 1 37.43 ? C1 5C5 602 A 1 
HETATM 5 N N 5C5 . . . E 4 25.851 -6.438 -8.362 1 36.11 ? N 5C5 602 A 1 
HETATM 6 C C2 5C5 . . . E 4 25.359 -5.611 -10.589 1 38.12 ? C2 5C5 602 A 1 
HETATM 7 S S 5C5 . . . E 4 23.981 -6.584 -11.054 1 41.47 ? S 5C5 602 A 1 
HETATM 8 C C3 5C5 . . . E 4 22.9 -5.702 -12.223 1 40.53 ? C3 5C5 602 A 1 
HETATM 9 C C18 5C5 . . . E 4 22.824 -4.35 -11.577 1 38.39 ? C18 5C5 602 A 1 
HETATM 10 C C24 5C5 . . . E 4 23.679 -3.322 -11.94 1 36.77 ? C24 5C5 602 A 1 
HETATM 11 C C23 5C5 . . . E 4 23.63 -2.119 -11.261 1 35.37 ? C23 5C5 602 A 1 
HETATM 12 C C21 5C5 . . . E 4 22.769 -1.933 -10.187 1 34.4 ? C21 5C5 602 A 1 
HETATM 13 O O1 5C5 . . . E 4 22.707 -0.754 -9.518 1 32.91 ? O1 5C5 602 A 1 
HETATM 14 C C22 5C5 . . . E 4 23.828 0.105 -9.36 1 32.09 ? C22 5C5 602 A 1 
HETATM 15 C C20 5C5 . . . E 4 21.921 -2.954 -9.795 1 35.66 ? C20 5C5 602 A 1 
HETATM 16 C C19 5C5 . . . E 4 21.955 -4.169 -10.484 1 37.89 ? C19 5C5 602 A 1 
HETATM 17 C C17 5C5 . . . E 4 23.478 -5.808 -13.601 1 42.15 ? C17 5C5 602 A 1 
HETATM 18 C C16 5C5 . . . E 4 24.544 -6.69 -13.819 1 42.29 ? C16 5C5 602 A 1 
HETATM 19 C C15 5C5 . . . E 4 25.082 -6.87 -15.08 1 44.61 ? C15 5C5 602 A 1 
HETATM 20 C C14 5C5 . . . E 4 24.571 -6.181 -16.171 1 46.26 ? C14 5C5 602 A 1 
HETATM 21 C C13 5C5 . . . E 4 23.498 -5.302 -16.021 1 46.62 ? C13 5C5 602 A 1 
HETATM 22 C C12 5C5 . . . E 4 22.911 -5.094 -14.783 1 44.32 ? C12 5C5 602 A 1 
HETATM 23 C C11 5C5 . . . E 4 21.799 -4.081 -14.752 1 44.6 ? C11 5C5 602 A 1 
HETATM 24 C C10 5C5 . . . E 4 20.579 -4.348 -13.883 1 44.2 ? C10 5C5 602 A 1 
HETATM 25 C C9 5C5 . . . E 4 20.47 -5.706 -13.258 1 43.78 ? C9 5C5 602 A 1 
HETATM 26 C C4 5C5 . . . E 4 21.552 -6.34 -12.431 1 41.86 ? C4 5C5 602 A 1 
HETATM 27 C C8 5C5 . . . E 4 19.256 -6.349 -13.439 1 44.79 ? C8 5C5 602 A 1 
HETATM 28 C C7 5C5 . . . E 4 19.045 -7.587 -12.875 1 45.03 ? C7 5C5 602 A 1 
HETATM 29 C C6 5C5 . . . E 4 20.039 -8.204 -12.124 1 44.16 ? C6 5C5 602 A 1 
HETATM 30 C C5 5C5 . . . E 4 21.283 -7.605 -11.908 1 42.27 ? C5 5C5 602 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#