data_5ZO8 # _model_server_result.job_id 0x6uOYNdJAFYCgNAj6JjzQ _model_server_result.datetime_utc '2024-10-22 03:40:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 5ZO8 # _exptl.entry_id 5ZO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.499 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-azanyl-3-[(4-methoxyphenyl)-diphenyl-methyl]sulfanyl-propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.99 _cell.angle_gamma 90 _cell.entry_id 5ZO8 _cell.length_a 95.293 _cell.length_b 50.724 _cell.length_c 83.355 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 103 A THR 112 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 A OE1 GLU 158 A GLU 167 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc3 C O1B ADP . A ADP 600 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc4 D MG MG . A MG 601 1_555 O O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc5 D MG MG . A MG 601 1_555 O O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 D MG MG . A MG 601 1_555 O O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc7 D MG MG . A MG 601 1_555 O O HOH . A HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 G O1 SO4 . A SO4 604 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc9 H NA NA . A NA 605 1_555 O O HOH . A HOH 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc10 B OG1 THR 103 B THR 112 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc11 B OE1 GLU 158 B GLU 167 1_555 N NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc12 I O3B ADP . B ADP 600 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc13 J MG MG . B MG 601 1_555 P O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc14 J MG MG . B MG 601 1_555 P O HOH . B HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc15 J MG MG . B MG 601 1_555 P O HOH . B HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc16 J MG MG . B MG 601 1_555 P O HOH . B HOH 745 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc17 M O4 SO4 . B SO4 604 1_555 N NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? # _chem_comp.formula 'C23 H23 N O3 S' _chem_comp.formula_weight 393.499 _chem_comp.id 4C5 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-azanyl-3-[(4-methoxyphenyl)-diphenyl-methyl]sulfanyl-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 4C5 doub 1 n y C15 C14 4C5 sing 2 n y C16 C17 4C5 sing 3 n y C14 C13 4C5 doub 4 n y C17 C12 4C5 doub 5 n y C13 C12 4C5 sing 6 n y C12 C4 4C5 sing 7 n n C6 C7 4C5 doub 8 n y C6 C5 4C5 sing 9 n y C7 C8 4C5 sing 10 n y C19 C20 4C5 doub 11 n y C19 C18 4C5 sing 12 n y C4 C5 4C5 sing 13 n n C4 C18 4C5 sing 14 n n C4 S 4C5 sing 15 n n C5 C11 4C5 doub 16 n y C20 C21 4C5 sing 17 n y C18 C23 4C5 doub 18 n y C8 O3 4C5 sing 19 n n C8 C10 4C5 doub 20 n y O3 C9 4C5 sing 21 n n C11 C10 4C5 sing 22 n y C21 C22 4C5 doub 23 n y S C3 4C5 sing 24 n n C23 C22 4C5 sing 25 n y C3 C2 4C5 sing 26 n n N C2 4C5 sing 27 n n C2 C1 4C5 sing 28 n n C1 O2 4C5 doub 29 n n C1 O1 4C5 sing 30 n n O1 H1 4C5 sing 31 n n C2 H2 4C5 sing 32 n n N H3 4C5 sing 33 n n N H4 4C5 sing 34 n n C3 H6 4C5 sing 35 n n C3 H7 4C5 sing 36 n n C17 H8 4C5 sing 37 n n C16 H9 4C5 sing 38 n n C15 H10 4C5 sing 39 n n C14 H11 4C5 sing 40 n n C13 H12 4C5 sing 41 n n C23 H13 4C5 sing 42 n n C22 H14 4C5 sing 43 n n C21 H15 4C5 sing 44 n n C20 H16 4C5 sing 45 n n C19 H17 4C5 sing 46 n n C11 H18 4C5 sing 47 n n C10 H19 4C5 sing 48 n n C9 H20 4C5 sing 49 n n C9 H21 4C5 sing 50 n n C9 H22 4C5 sing 51 n n C7 H23 4C5 sing 52 n n C6 H24 4C5 sing 53 n n # _atom_sites.entry_id 5ZO8 _atom_sites.fract_transf_matrix[1][1] 0.010494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004452 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 600 600 ADP ADP . D 3 MG A 1 601 601 MG MG . E 4 4C5 A 1 602 602 4C5 4C5 . F 5 SO4 A 1 603 603 SO4 SO4 . G 5 SO4 A 1 604 604 SO4 SO4 . H 6 NA A 1 605 605 NA NA . I 2 ADP B 1 600 600 ADP ADP . J 3 MG B 1 601 601 MG MG . K 4 4C5 B 1 602 602 4C5 4C5 . L 5 SO4 B 1 603 603 SO4 SO4 . M 5 SO4 B 1 604 604 SO4 SO4 . N 6 NA B 1 605 605 NA NA . O 7 HOH A 1 701 41 HOH HOH . O 7 HOH A 2 702 16 HOH HOH . O 7 HOH A 3 703 49 HOH HOH . O 7 HOH A 4 704 58 HOH HOH . O 7 HOH A 5 705 78 HOH HOH . O 7 HOH A 6 706 102 HOH HOH . O 7 HOH A 7 707 38 HOH HOH . O 7 HOH A 8 708 53 HOH HOH . O 7 HOH A 9 709 66 HOH HOH . O 7 HOH A 10 710 5 HOH HOH . O 7 HOH A 11 711 13 HOH HOH . O 7 HOH A 12 712 106 HOH HOH . O 7 HOH A 13 713 57 HOH HOH . O 7 HOH A 14 714 21 HOH HOH . O 7 HOH A 15 715 48 HOH HOH . O 7 HOH A 16 716 91 HOH HOH . O 7 HOH A 17 717 2 HOH HOH . O 7 HOH A 18 718 8 HOH HOH . O 7 HOH A 19 719 3 HOH HOH . O 7 HOH A 20 720 83 HOH HOH . O 7 HOH A 21 721 31 HOH HOH . O 7 HOH A 22 722 82 HOH HOH . O 7 HOH A 23 723 11 HOH HOH . O 7 HOH A 24 724 7 HOH HOH . O 7 HOH A 25 725 6 HOH HOH . O 7 HOH A 26 726 75 HOH HOH . O 7 HOH A 27 727 39 HOH HOH . O 7 HOH A 28 728 62 HOH HOH . O 7 HOH A 29 729 79 HOH HOH . O 7 HOH A 30 730 45 HOH HOH . O 7 HOH A 31 731 27 HOH HOH . O 7 HOH A 32 732 107 HOH HOH . O 7 HOH A 33 733 100 HOH HOH . O 7 HOH A 34 734 101 HOH HOH . O 7 HOH A 35 735 18 HOH HOH . O 7 HOH A 36 736 56 HOH HOH . O 7 HOH A 37 737 55 HOH HOH . O 7 HOH A 38 738 28 HOH HOH . O 7 HOH A 39 739 94 HOH HOH . O 7 HOH A 40 740 105 HOH HOH . O 7 HOH A 41 741 96 HOH HOH . O 7 HOH A 42 742 93 HOH HOH . O 7 HOH A 43 743 61 HOH HOH . O 7 HOH A 44 744 85 HOH HOH . O 7 HOH A 45 745 20 HOH HOH . O 7 HOH A 46 746 10 HOH HOH . O 7 HOH A 47 747 97 HOH HOH . O 7 HOH A 48 748 98 HOH HOH . O 7 HOH A 49 749 54 HOH HOH . O 7 HOH A 50 750 92 HOH HOH . O 7 HOH A 51 751 1 HOH HOH . O 7 HOH A 52 752 47 HOH HOH . O 7 HOH A 53 753 74 HOH HOH . O 7 HOH A 54 754 15 HOH HOH . O 7 HOH A 55 755 29 HOH HOH . O 7 HOH A 56 756 36 HOH HOH . O 7 HOH A 57 757 24 HOH HOH . O 7 HOH A 58 758 67 HOH HOH . O 7 HOH A 59 759 70 HOH HOH . P 7 HOH B 1 701 72 HOH HOH . P 7 HOH B 2 702 64 HOH HOH . P 7 HOH B 3 703 26 HOH HOH . P 7 HOH B 4 704 77 HOH HOH . P 7 HOH B 5 705 84 HOH HOH . P 7 HOH B 6 706 42 HOH HOH . P 7 HOH B 7 707 12 HOH HOH . P 7 HOH B 8 708 25 HOH HOH . P 7 HOH B 9 709 86 HOH HOH . P 7 HOH B 10 710 88 HOH HOH . P 7 HOH B 11 711 22 HOH HOH . P 7 HOH B 12 712 68 HOH HOH . P 7 HOH B 13 713 95 HOH HOH . P 7 HOH B 14 714 35 HOH HOH . P 7 HOH B 15 715 87 HOH HOH . P 7 HOH B 16 716 60 HOH HOH . P 7 HOH B 17 717 104 HOH HOH . P 7 HOH B 18 718 80 HOH HOH . P 7 HOH B 19 719 90 HOH HOH . P 7 HOH B 20 720 73 HOH HOH . P 7 HOH B 21 721 50 HOH HOH . P 7 HOH B 22 722 103 HOH HOH . P 7 HOH B 23 723 71 HOH HOH . P 7 HOH B 24 724 17 HOH HOH . P 7 HOH B 25 725 51 HOH HOH . P 7 HOH B 26 726 89 HOH HOH . P 7 HOH B 27 727 43 HOH HOH . P 7 HOH B 28 728 32 HOH HOH . P 7 HOH B 29 729 59 HOH HOH . P 7 HOH B 30 730 4 HOH HOH . P 7 HOH B 31 731 37 HOH HOH . P 7 HOH B 32 732 40 HOH HOH . P 7 HOH B 33 733 44 HOH HOH . P 7 HOH B 34 734 52 HOH HOH . P 7 HOH B 35 735 81 HOH HOH . P 7 HOH B 36 736 65 HOH HOH . P 7 HOH B 37 737 33 HOH HOH . P 7 HOH B 38 738 76 HOH HOH . P 7 HOH B 39 739 23 HOH HOH . P 7 HOH B 40 740 46 HOH HOH . P 7 HOH B 41 741 14 HOH HOH . P 7 HOH B 42 742 30 HOH HOH . P 7 HOH B 43 743 9 HOH HOH . P 7 HOH B 44 744 19 HOH HOH . P 7 HOH B 45 745 69 HOH HOH . P 7 HOH B 46 746 34 HOH HOH . P 7 HOH B 47 747 63 HOH HOH . P 7 HOH B 48 748 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 4C5 . . . E 4 38.224 -6.654 25.689 1 26.62 ? O1 4C5 602 A 1 HETATM 2 C C1 4C5 . . . E 4 39.065 -6.988 24.879 1 30.88 ? C1 4C5 602 A 1 HETATM 3 O O2 4C5 . . . E 4 40.324 -6.788 25.264 1 34.76 ? O2 4C5 602 A 1 HETATM 4 C C2 4C5 . . . E 4 38.697 -7.566 23.5 1 31 ? C2 4C5 602 A 1 HETATM 5 N N 4C5 . . . E 4 37.257 -7.387 23.266 1 28.85 ? N 4C5 602 A 1 HETATM 6 C C3 4C5 . . . E 4 39.443 -6.873 22.371 1 28.79 ? C3 4C5 602 A 1 HETATM 7 S S 4C5 . . . E 4 39.449 -7.72 20.79 1 33.81 ? S 4C5 602 A 1 HETATM 8 C C4 4C5 . . . E 4 40.538 -6.805 19.661 1 26.61 ? C4 4C5 602 A 1 HETATM 9 C C12 4C5 . . . E 4 40.517 -7.403 18.296 1 27.31 ? C12 4C5 602 A 1 HETATM 10 C C17 4C5 . . . E 4 40.785 -6.613 17.182 1 26.33 ? C17 4C5 602 A 1 HETATM 11 C C16 4C5 . . . E 4 40.719 -7.199 15.939 1 27 ? C16 4C5 602 A 1 HETATM 12 C C15 4C5 . . . E 4 40.444 -8.556 15.757 1 24.57 ? C15 4C5 602 A 1 HETATM 13 C C14 4C5 . . . E 4 40.162 -9.347 16.841 1 23.83 ? C14 4C5 602 A 1 HETATM 14 C C13 4C5 . . . E 4 40.189 -8.765 18.107 1 26.49 ? C13 4C5 602 A 1 HETATM 15 C C18 4C5 . . . E 4 42.001 -6.829 20.09 1 29.31 ? C18 4C5 602 A 1 HETATM 16 C C23 4C5 . . . E 4 42.496 -7.747 21.017 1 28.91 ? C23 4C5 602 A 1 HETATM 17 C C22 4C5 . . . E 4 43.841 -7.761 21.358 1 31.05 ? C22 4C5 602 A 1 HETATM 18 C C21 4C5 . . . E 4 44.724 -6.862 20.799 1 30.22 ? C21 4C5 602 A 1 HETATM 19 C C20 4C5 . . . E 4 44.254 -5.931 19.902 1 30.48 ? C20 4C5 602 A 1 HETATM 20 C C19 4C5 . . . E 4 42.914 -5.931 19.536 1 31.16 ? C19 4C5 602 A 1 HETATM 21 C C5 4C5 . . . E 4 39.886 -5.46 19.79 1 23.75 ? C5 4C5 602 A 1 HETATM 22 C C11 4C5 . . . E 4 40.386 -4.439 20.627 1 21.81 ? C11 4C5 602 A 1 HETATM 23 C C10 4C5 . . . E 4 39.703 -3.237 20.767 1 21.49 ? C10 4C5 602 A 1 HETATM 24 C C8 4C5 . . . E 4 38.47 -3.067 20.121 1 21.16 ? C8 4C5 602 A 1 HETATM 25 O O3 4C5 . . . E 4 37.746 -1.941 20.203 1 20.83 ? O3 4C5 602 A 1 HETATM 26 C C9 4C5 . . . E 4 37.836 -1.014 21.259 1 20.66 ? C9 4C5 602 A 1 HETATM 27 C C7 4C5 . . . E 4 37.97 -4.049 19.297 1 23.12 ? C7 4C5 602 A 1 HETATM 28 C C6 4C5 . . . E 4 38.678 -5.245 19.152 1 23.88 ? C6 4C5 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #