data_5ZO9 # _model_server_result.job_id 4vq_spqUFRJDYD6RQNkblw _model_server_result.datetime_utc '2024-12-26 15:26:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 5ZO9 # _exptl.entry_id 5ZO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.499 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-azanyl-3-[(4-methoxyphenyl)-diphenyl-methyl]sulfanyl-propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.19 _cell.angle_gamma 90 _cell.entry_id 5ZO9 _cell.length_a 155.158 _cell.length_b 50.729 _cell.length_c 94.309 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 103 A THR 112 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A OE1 GLU 158 A GLU 167 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc3 C O1B ADP . A ADP 600 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc4 D MG MG . A MG 601 1_555 O O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc5 G O1 SO4 . A SO4 604 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc6 B OG1 THR 103 B THR 112 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc7 B OE1 GLU 158 B GLU 167 1_555 N NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc8 I O2B ADP . B ADP 600 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc9 J MG MG . B MG 601 1_555 P O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc10 M O4 SO4 . B SO4 604 1_555 N NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? # _chem_comp.formula 'C23 H23 N O3 S' _chem_comp.formula_weight 393.499 _chem_comp.id 4C5 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-azanyl-3-[(4-methoxyphenyl)-diphenyl-methyl]sulfanyl-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 4C5 doub 1 n y C15 C14 4C5 sing 2 n y C16 C17 4C5 sing 3 n y C14 C13 4C5 doub 4 n y C17 C12 4C5 doub 5 n y C13 C12 4C5 sing 6 n y C12 C4 4C5 sing 7 n n C6 C7 4C5 doub 8 n y C6 C5 4C5 sing 9 n y C7 C8 4C5 sing 10 n y C19 C20 4C5 doub 11 n y C19 C18 4C5 sing 12 n y C4 C5 4C5 sing 13 n n C4 C18 4C5 sing 14 n n C4 S 4C5 sing 15 n n C5 C11 4C5 doub 16 n y C20 C21 4C5 sing 17 n y C18 C23 4C5 doub 18 n y C8 O3 4C5 sing 19 n n C8 C10 4C5 doub 20 n y O3 C9 4C5 sing 21 n n C11 C10 4C5 sing 22 n y C21 C22 4C5 doub 23 n y S C3 4C5 sing 24 n n C23 C22 4C5 sing 25 n y C3 C2 4C5 sing 26 n n N C2 4C5 sing 27 n n C2 C1 4C5 sing 28 n n C1 O2 4C5 doub 29 n n C1 O1 4C5 sing 30 n n O1 H1 4C5 sing 31 n n C2 H2 4C5 sing 32 n n N H3 4C5 sing 33 n n N H4 4C5 sing 34 n n C3 H6 4C5 sing 35 n n C3 H7 4C5 sing 36 n n C17 H8 4C5 sing 37 n n C16 H9 4C5 sing 38 n n C15 H10 4C5 sing 39 n n C14 H11 4C5 sing 40 n n C13 H12 4C5 sing 41 n n C23 H13 4C5 sing 42 n n C22 H14 4C5 sing 43 n n C21 H15 4C5 sing 44 n n C20 H16 4C5 sing 45 n n C19 H17 4C5 sing 46 n n C11 H18 4C5 sing 47 n n C10 H19 4C5 sing 48 n n C9 H20 4C5 sing 49 n n C9 H21 4C5 sing 50 n n C9 H22 4C5 sing 51 n n C7 H23 4C5 sing 52 n n C6 H24 4C5 sing 53 n n # _atom_sites.entry_id 5ZO9 _atom_sites.fract_transf_matrix[1][1] 0.006445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001392 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 600 600 ADP ADP . D 3 MG A 1 601 601 MG MG . E 4 4C5 A 1 602 602 4C5 4C5 . F 5 SO4 A 1 603 603 SO4 SO4 . G 5 SO4 A 1 604 604 SO4 SO4 . H 6 NA A 1 605 605 NA NA . I 2 ADP B 1 600 600 ADP ADP . J 3 MG B 1 601 601 MG MG . K 4 4C5 B 1 602 602 4C5 4C5 . L 5 SO4 B 1 603 603 SO4 SO4 . M 5 SO4 B 1 604 604 SO4 SO4 . N 6 NA B 1 605 605 NA NA . O 7 HOH A 1 701 18 HOH HOH . O 7 HOH A 2 702 6 HOH HOH . O 7 HOH A 3 703 5 HOH HOH . O 7 HOH A 4 704 17 HOH HOH . O 7 HOH A 5 705 7 HOH HOH . O 7 HOH A 6 706 10 HOH HOH . O 7 HOH A 7 707 13 HOH HOH . O 7 HOH A 8 708 9 HOH HOH . O 7 HOH A 9 709 1 HOH HOH . P 7 HOH B 1 701 15 HOH HOH . P 7 HOH B 2 702 4 HOH HOH . P 7 HOH B 3 703 14 HOH HOH . P 7 HOH B 4 704 16 HOH HOH . P 7 HOH B 5 705 8 HOH HOH . P 7 HOH B 6 706 12 HOH HOH . P 7 HOH B 7 707 11 HOH HOH . P 7 HOH B 8 708 3 HOH HOH . P 7 HOH B 9 709 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 4C5 . . . E 4 27.222 -5.438 -8.789 1 55.53 ? O1 4C5 602 A 1 HETATM 2 C C1 4C5 . . . E 4 26.847 -6.228 -9.654 1 59.02 ? C1 4C5 602 A 1 HETATM 3 O O2 4C5 . . . E 4 27.714 -6.514 -10.618 1 61.34 ? O2 4C5 602 A 1 HETATM 4 C C2 4C5 . . . E 4 25.468 -6.852 -9.679 1 56.89 ? C2 4C5 602 A 1 HETATM 5 N N 4C5 . . . E 4 24.751 -6.462 -8.507 1 64.59 ? N 4C5 602 A 1 HETATM 6 C C3 4C5 . . . E 4 24.633 -6.32 -10.832 1 58.6 ? C3 4C5 602 A 1 HETATM 7 S S 4C5 . . . E 4 22.94 -6.937 -10.921 1 59.23 ? S 4C5 602 A 1 HETATM 8 C C4 4C5 . . . E 4 21.999 -6.02 -12.181 1 55.35 ? C4 4C5 602 A 1 HETATM 9 C C12 4C5 . . . E 4 20.598 -6.568 -12.398 1 60.42 ? C12 4C5 602 A 1 HETATM 10 C C17 4C5 . . . E 4 19.54 -5.717 -12.823 1 62.43 ? C17 4C5 602 A 1 HETATM 11 C C16 4C5 . . . E 4 18.255 -6.242 -13.008 1 66.56 ? C16 4C5 602 A 1 HETATM 12 C C15 4C5 . . . E 4 18.006 -7.609 -12.78 1 64.43 ? C15 4C5 602 A 1 HETATM 13 C C14 4C5 . . . E 4 19.036 -8.455 -12.362 1 62.15 ? C14 4C5 602 A 1 HETATM 14 C C13 4C5 . . . E 4 20.321 -7.937 -12.175 1 60.78 ? C13 4C5 602 A 1 HETATM 15 C C18 4C5 . . . E 4 22.645 -6.091 -13.577 1 54.76 ? C18 4C5 602 A 1 HETATM 16 C C23 4C5 . . . E 4 23.653 -7.027 -13.917 1 58.95 ? C23 4C5 602 A 1 HETATM 17 C C22 4C5 . . . E 4 24.241 -7.081 -15.182 1 58.62 ? C22 4C5 602 A 1 HETATM 18 C C21 4C5 . . . E 4 23.818 -6.223 -16.179 1 57.81 ? C21 4C5 602 A 1 HETATM 19 C C20 4C5 . . . E 4 22.815 -5.305 -15.874 1 61.6 ? C20 4C5 602 A 1 HETATM 20 C C19 4C5 . . . E 4 22.231 -5.244 -14.6 1 55.98 ? C19 4C5 602 A 1 HETATM 21 C C5 4C5 . . . E 4 21.988 -4.655 -11.513 1 48.74 ? C5 4C5 602 A 1 HETATM 22 C C11 4C5 . . . E 4 22.883 -3.627 -11.857 1 45.65 ? C11 4C5 602 A 1 HETATM 23 C C10 4C5 . . . E 4 22.841 -2.407 -11.158 1 46.66 ? C10 4C5 602 A 1 HETATM 24 C C8 4C5 . . . E 4 21.934 -2.181 -10.091 1 46.08 ? C8 4C5 602 A 1 HETATM 25 O O3 4C5 . . . E 4 21.867 -1.006 -9.371 1 45.28 ? O3 4C5 602 A 1 HETATM 26 C C9 4C5 . . . E 4 22.888 -0.015 -9.498 1 47.8 ? C9 4C5 602 A 1 HETATM 27 C C7 4C5 . . . E 4 21.041 -3.195 -9.758 1 46.74 ? C7 4C5 602 A 1 HETATM 28 C C6 4C5 . . . E 4 21.082 -4.413 -10.442 1 48.53 ? C6 4C5 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #