data_5ZOC # _model_server_result.job_id FLIPfcLFOns0dqYsWLxtGQ _model_server_result.datetime_utc '2025-07-07 02:06:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zoc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ZOC # _exptl.entry_id 5ZOC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.61 _cell.angle_gamma 90 _cell.entry_id 5ZOC _cell.length_a 58.714 _cell.length_b 77.873 _cell.length_c 54.074 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 58.714 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 117 A THR 117 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 A O ILE 120 A ILE 120 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 5ZOC _atom_sites.fract_transf_matrix[1][1] 0.017032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007093 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE A 1 201 201 ADE ADE . C 3 NA A 1 202 202 NA NA . D 4 HOH A 1 301 32 HOH HOH . D 4 HOH A 2 302 38 HOH HOH . D 4 HOH A 3 303 24 HOH HOH . D 4 HOH A 4 304 43 HOH HOH . D 4 HOH A 5 305 16 HOH HOH . D 4 HOH A 6 306 45 HOH HOH . D 4 HOH A 7 307 22 HOH HOH . D 4 HOH A 8 308 37 HOH HOH . D 4 HOH A 9 309 27 HOH HOH . D 4 HOH A 10 310 26 HOH HOH . D 4 HOH A 11 311 20 HOH HOH . D 4 HOH A 12 312 36 HOH HOH . D 4 HOH A 13 313 14 HOH HOH . D 4 HOH A 14 314 2 HOH HOH . D 4 HOH A 15 315 8 HOH HOH . D 4 HOH A 16 316 35 HOH HOH . D 4 HOH A 17 317 6 HOH HOH . D 4 HOH A 18 318 15 HOH HOH . D 4 HOH A 19 319 21 HOH HOH . D 4 HOH A 20 320 33 HOH HOH . D 4 HOH A 21 321 12 HOH HOH . D 4 HOH A 22 322 40 HOH HOH . D 4 HOH A 23 323 31 HOH HOH . D 4 HOH A 24 324 10 HOH HOH . D 4 HOH A 25 325 23 HOH HOH . D 4 HOH A 26 326 3 HOH HOH . D 4 HOH A 27 327 17 HOH HOH . D 4 HOH A 28 328 29 HOH HOH . D 4 HOH A 29 329 5 HOH HOH . D 4 HOH A 30 330 30 HOH HOH . D 4 HOH A 31 331 39 HOH HOH . D 4 HOH A 32 332 44 HOH HOH . D 4 HOH A 33 333 4 HOH HOH . D 4 HOH A 34 334 42 HOH HOH . D 4 HOH A 35 335 34 HOH HOH . D 4 HOH A 36 336 19 HOH HOH . D 4 HOH A 37 337 1 HOH HOH . D 4 HOH A 38 338 25 HOH HOH . D 4 HOH A 39 339 41 HOH HOH . D 4 HOH A 40 340 9 HOH HOH . D 4 HOH A 41 341 11 HOH HOH . D 4 HOH A 42 342 7 HOH HOH . D 4 HOH A 43 343 18 HOH HOH . D 4 HOH A 44 344 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . B 2 13.637 -8.925 2.422 1 32.5 ? N9 ADE 201 A 1 HETATM 2 C C8 ADE . . . B 2 12.517 -9.532 2.899 1 33.54 ? C8 ADE 201 A 1 HETATM 3 N N7 ADE . . . B 2 11.431 -9.147 2.189 1 34.47 ? N7 ADE 201 A 1 HETATM 4 C C5 ADE . . . B 2 11.838 -8.281 1.245 1 34.49 ? C5 ADE 201 A 1 HETATM 5 C C6 ADE . . . B 2 11.194 -7.501 0.166 1 36.78 ? C6 ADE 201 A 1 HETATM 6 N N6 ADE . . . B 2 9.859 -7.563 -0.055 1 38.86 ? N6 ADE 201 A 1 HETATM 7 N N1 ADE . . . B 2 11.991 -6.727 -0.598 1 34.53 ? N1 ADE 201 A 1 HETATM 8 C C2 ADE . . . B 2 13.317 -6.645 -0.394 1 32.64 ? C2 ADE 201 A 1 HETATM 9 N N3 ADE . . . B 2 13.96 -7.329 0.565 1 30.37 ? N3 ADE 201 A 1 HETATM 10 C C4 ADE . . . B 2 13.29 -8.143 1.399 1 30.72 ? C4 ADE 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #