data_5ZOD # _model_server_result.job_id O0HEfUmS8segvCznqyvutQ _model_server_result.datetime_utc '2024-11-15 19:44:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5ZOD # _exptl.entry_id 5ZOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZOD _cell.length_a 40.95 _cell.length_b 61.07 _cell.length_c 110.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 17 A ALA 17 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.341 ? metalc ? metalc2 A OE2 GLU 160 A GLU 160 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc3 A OD2 ASP 179 A ASP 179 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc4 A OD2 ASP 181 A ASP 181 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc5 A O GLU 206 A GLU 206 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc6 A OD1 ASP 225 A ASP 225 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc7 A OD2 ASP 233 A ASP 233 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc8 A OH TYR 234 A TYR 234 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc9 A O LEU 289 A LEU 289 1_555 G K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc10 B MG MG . A MG 401 1_555 H O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc11 B MG MG . A MG 401 1_555 H O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 B MG MG . A MG 401 1_555 H O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc13 B MG MG . A MG 401 1_555 H O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc14 B MG MG . A MG 401 1_555 H O HOH . A HOH 547 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc15 B MG MG . A MG 401 1_555 H O HOH . A HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc16 C MG MG . A MG 402 1_555 H O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc17 D K K . A K 403 1_555 H O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc18 E K K . A K 404 1_555 H O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc19 F K K . A K 405 1_555 H O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc20 F K K . A K 405 1_555 H O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc21 G K K . A K 406 1_555 H O HOH . A HOH 580 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc22 G K K . A K 406 1_555 H O HOH . A HOH 594 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc23 G K K . A K 406 1_555 H O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ZOD _atom_sites.fract_transf_matrix[1][1] 0.02442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 201 MG MG . C 2 MG A 1 402 202 MG MG . D 3 K A 1 403 301 K K . E 3 K A 1 404 302 K K . F 3 K A 1 405 303 K K . G 3 K A 1 406 304 K K . H 4 HOH A 1 501 93 HOH HOH . H 4 HOH A 2 502 49 HOH HOH . H 4 HOH A 3 503 39 HOH HOH . H 4 HOH A 4 504 164 HOH HOH . H 4 HOH A 5 505 96 HOH HOH . H 4 HOH A 6 506 131 HOH HOH . H 4 HOH A 7 507 83 HOH HOH . H 4 HOH A 8 508 10 HOH HOH . H 4 HOH A 9 509 143 HOH HOH . H 4 HOH A 10 510 109 HOH HOH . H 4 HOH A 11 511 120 HOH HOH . H 4 HOH A 12 512 162 HOH HOH . H 4 HOH A 13 513 161 HOH HOH . H 4 HOH A 14 514 47 HOH HOH . H 4 HOH A 15 515 21 HOH HOH . H 4 HOH A 16 516 36 HOH HOH . H 4 HOH A 17 517 7 HOH HOH . H 4 HOH A 18 518 105 HOH HOH . H 4 HOH A 19 519 146 HOH HOH . H 4 HOH A 20 520 58 HOH HOH . H 4 HOH A 21 521 16 HOH HOH . H 4 HOH A 22 522 136 HOH HOH . H 4 HOH A 23 523 48 HOH HOH . H 4 HOH A 24 524 60 HOH HOH . H 4 HOH A 25 525 113 HOH HOH . H 4 HOH A 26 526 68 HOH HOH . H 4 HOH A 27 527 33 HOH HOH . H 4 HOH A 28 528 75 HOH HOH . H 4 HOH A 29 529 13 HOH HOH . H 4 HOH A 30 530 30 HOH HOH . H 4 HOH A 31 531 41 HOH HOH . H 4 HOH A 32 532 55 HOH HOH . H 4 HOH A 33 533 156 HOH HOH . H 4 HOH A 34 534 114 HOH HOH . H 4 HOH A 35 535 6 HOH HOH . H 4 HOH A 36 536 94 HOH HOH . H 4 HOH A 37 537 106 HOH HOH . H 4 HOH A 38 538 82 HOH HOH . H 4 HOH A 39 539 115 HOH HOH . H 4 HOH A 40 540 89 HOH HOH . H 4 HOH A 41 541 129 HOH HOH . H 4 HOH A 42 542 163 HOH HOH . H 4 HOH A 43 543 1 HOH HOH . H 4 HOH A 44 544 19 HOH HOH . H 4 HOH A 45 545 25 HOH HOH . H 4 HOH A 46 546 71 HOH HOH . H 4 HOH A 47 547 165 HOH HOH . H 4 HOH A 48 548 147 HOH HOH . H 4 HOH A 49 549 56 HOH HOH . H 4 HOH A 50 550 128 HOH HOH . H 4 HOH A 51 551 28 HOH HOH . H 4 HOH A 52 552 2 HOH HOH . H 4 HOH A 53 553 140 HOH HOH . H 4 HOH A 54 554 134 HOH HOH . H 4 HOH A 55 555 4 HOH HOH . H 4 HOH A 56 556 35 HOH HOH . H 4 HOH A 57 557 64 HOH HOH . H 4 HOH A 58 558 32 HOH HOH . H 4 HOH A 59 559 81 HOH HOH . H 4 HOH A 60 560 15 HOH HOH . H 4 HOH A 61 561 51 HOH HOH . H 4 HOH A 62 562 112 HOH HOH . H 4 HOH A 63 563 5 HOH HOH . H 4 HOH A 64 564 103 HOH HOH . H 4 HOH A 65 565 79 HOH HOH . H 4 HOH A 66 566 125 HOH HOH . H 4 HOH A 67 567 110 HOH HOH . H 4 HOH A 68 568 144 HOH HOH . H 4 HOH A 69 569 57 HOH HOH . H 4 HOH A 70 570 17 HOH HOH . H 4 HOH A 71 571 100 HOH HOH . H 4 HOH A 72 572 133 HOH HOH . H 4 HOH A 73 573 145 HOH HOH . H 4 HOH A 74 574 9 HOH HOH . H 4 HOH A 75 575 37 HOH HOH . H 4 HOH A 76 576 23 HOH HOH . H 4 HOH A 77 577 141 HOH HOH . H 4 HOH A 78 578 12 HOH HOH . H 4 HOH A 79 579 73 HOH HOH . H 4 HOH A 80 580 67 HOH HOH . H 4 HOH A 81 581 62 HOH HOH . H 4 HOH A 82 582 107 HOH HOH . H 4 HOH A 83 583 45 HOH HOH . H 4 HOH A 84 584 27 HOH HOH . H 4 HOH A 85 585 40 HOH HOH . H 4 HOH A 86 586 42 HOH HOH . H 4 HOH A 87 587 88 HOH HOH . H 4 HOH A 88 588 38 HOH HOH . H 4 HOH A 89 589 53 HOH HOH . H 4 HOH A 90 590 111 HOH HOH . H 4 HOH A 91 591 46 HOH HOH . H 4 HOH A 92 592 108 HOH HOH . H 4 HOH A 93 593 104 HOH HOH . H 4 HOH A 94 594 63 HOH HOH . H 4 HOH A 95 595 152 HOH HOH . H 4 HOH A 96 596 77 HOH HOH . H 4 HOH A 97 597 65 HOH HOH . H 4 HOH A 98 598 22 HOH HOH . H 4 HOH A 99 599 102 HOH HOH . H 4 HOH A 100 600 85 HOH HOH . H 4 HOH A 101 601 14 HOH HOH . H 4 HOH A 102 602 26 HOH HOH . H 4 HOH A 103 603 124 HOH HOH . H 4 HOH A 104 604 50 HOH HOH . H 4 HOH A 105 605 86 HOH HOH . H 4 HOH A 106 606 98 HOH HOH . H 4 HOH A 107 607 137 HOH HOH . H 4 HOH A 108 608 139 HOH HOH . H 4 HOH A 109 609 153 HOH HOH . H 4 HOH A 110 610 159 HOH HOH . H 4 HOH A 111 611 157 HOH HOH . H 4 HOH A 112 612 52 HOH HOH . H 4 HOH A 113 613 84 HOH HOH . H 4 HOH A 114 614 34 HOH HOH . H 4 HOH A 115 615 31 HOH HOH . H 4 HOH A 116 616 3 HOH HOH . H 4 HOH A 117 617 116 HOH HOH . H 4 HOH A 118 618 80 HOH HOH . H 4 HOH A 119 619 130 HOH HOH . H 4 HOH A 120 620 87 HOH HOH . H 4 HOH A 121 621 24 HOH HOH . H 4 HOH A 122 622 117 HOH HOH . H 4 HOH A 123 623 90 HOH HOH . H 4 HOH A 124 624 142 HOH HOH . H 4 HOH A 125 625 8 HOH HOH . H 4 HOH A 126 626 99 HOH HOH . H 4 HOH A 127 627 66 HOH HOH . H 4 HOH A 128 628 92 HOH HOH . H 4 HOH A 129 629 138 HOH HOH . H 4 HOH A 130 630 43 HOH HOH . H 4 HOH A 131 631 101 HOH HOH . H 4 HOH A 132 632 132 HOH HOH . H 4 HOH A 133 633 160 HOH HOH . H 4 HOH A 134 634 20 HOH HOH . H 4 HOH A 135 635 149 HOH HOH . H 4 HOH A 136 636 18 HOH HOH . H 4 HOH A 137 637 91 HOH HOH . H 4 HOH A 138 638 44 HOH HOH . H 4 HOH A 139 639 154 HOH HOH . H 4 HOH A 140 640 122 HOH HOH . H 4 HOH A 141 641 76 HOH HOH . H 4 HOH A 142 642 119 HOH HOH . H 4 HOH A 143 643 72 HOH HOH . H 4 HOH A 144 644 118 HOH HOH . H 4 HOH A 145 645 11 HOH HOH . H 4 HOH A 146 646 155 HOH HOH . H 4 HOH A 147 647 29 HOH HOH . H 4 HOH A 148 648 97 HOH HOH . H 4 HOH A 149 649 148 HOH HOH . H 4 HOH A 150 650 54 HOH HOH . H 4 HOH A 151 651 70 HOH HOH . H 4 HOH A 152 652 59 HOH HOH . H 4 HOH A 153 653 123 HOH HOH . H 4 HOH A 154 654 74 HOH HOH . H 4 HOH A 155 655 61 HOH HOH . H 4 HOH A 156 656 150 HOH HOH . H 4 HOH A 157 657 126 HOH HOH . H 4 HOH A 158 658 95 HOH HOH . H 4 HOH A 159 659 151 HOH HOH . H 4 HOH A 160 660 158 HOH HOH . H 4 HOH A 161 661 127 HOH HOH . H 4 HOH A 162 662 135 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 36.692 _atom_site.Cartn_y 37.346 _atom_site.Cartn_z 7.992 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #