data_5ZQ0 # _model_server_result.job_id 0EAMPnzUchi7TJjRzuKnZQ _model_server_result.datetime_utc '2025-01-06 22:23:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zq0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5ZQ0 # _exptl.entry_id 5ZQ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ZQ0 _cell.length_a 47.412 _cell.length_b 95.809 _cell.length_c 114.208 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 409 A CYS 408 1_555 B C6 MUM 3 B MUM 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale2 B O3' U 2 B U 746 1_555 B P MUM 3 B MUM 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale3 B O3' MUM 3 B MUM 747 1_555 B P G 4 B G 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 395 n n N HN1 SAH sing 396 n n N HN2 SAH sing 397 n n CA CB SAH sing 398 n n CA C SAH sing 399 n n CA HA SAH sing 400 n n CB CG SAH sing 401 n n CB HB1 SAH sing 402 n n CB HB2 SAH sing 403 n n CG SD SAH sing 404 n n CG HG1 SAH sing 405 n n CG HG2 SAH sing 406 n n SD C5' SAH sing 407 n n C O SAH doub 408 n n C OXT SAH sing 409 n n OXT HXT SAH sing 410 n n C5' C4' SAH sing 411 n n C5' "H5'1" SAH sing 412 n n C5' "H5'2" SAH sing 413 n n C4' O4' SAH sing 414 n n C4' C3' SAH sing 415 n n C4' H4' SAH sing 416 n n O4' C1' SAH sing 417 n n C3' O3' SAH sing 418 n n C3' C2' SAH sing 419 n n C3' H3' SAH sing 420 n n O3' HO3' SAH sing 421 n n C2' O2' SAH sing 422 n n C2' C1' SAH sing 423 n n C2' H2' SAH sing 424 n n O2' HO2' SAH sing 425 n n C1' N9 SAH sing 426 n n C1' H1' SAH sing 427 n n N9 C8 SAH sing 428 n y N9 C4 SAH sing 429 n y C8 N7 SAH doub 430 n y C8 H8 SAH sing 431 n n N7 C5 SAH sing 432 n y C5 C6 SAH sing 433 n y C5 C4 SAH doub 434 n y C6 N6 SAH sing 435 n n C6 N1 SAH doub 436 n y N6 HN61 SAH sing 437 n n N6 HN62 SAH sing 438 n n N1 C2 SAH sing 439 n y C2 N3 SAH doub 440 n y C2 H2 SAH sing 441 n n N3 C4 SAH sing 442 n y # _atom_sites.entry_id 5ZQ0 _atom_sites.fract_transf_matrix[1][1] 0.021092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 501 1 SAH SAH . D 4 HOH A 1 601 149 HOH HOH . D 4 HOH A 2 602 206 HOH HOH . D 4 HOH A 3 603 181 HOH HOH . D 4 HOH A 4 604 124 HOH HOH . D 4 HOH A 5 605 123 HOH HOH . D 4 HOH A 6 606 100 HOH HOH . D 4 HOH A 7 607 156 HOH HOH . D 4 HOH A 8 608 186 HOH HOH . D 4 HOH A 9 609 211 HOH HOH . D 4 HOH A 10 610 89 HOH HOH . D 4 HOH A 11 611 62 HOH HOH . D 4 HOH A 12 612 34 HOH HOH . D 4 HOH A 13 613 133 HOH HOH . D 4 HOH A 14 614 48 HOH HOH . D 4 HOH A 15 615 57 HOH HOH . D 4 HOH A 16 616 5 HOH HOH . D 4 HOH A 17 617 183 HOH HOH . D 4 HOH A 18 618 73 HOH HOH . D 4 HOH A 19 619 116 HOH HOH . D 4 HOH A 20 620 82 HOH HOH . D 4 HOH A 21 621 92 HOH HOH . D 4 HOH A 22 622 23 HOH HOH . D 4 HOH A 23 623 117 HOH HOH . D 4 HOH A 24 624 131 HOH HOH . D 4 HOH A 25 625 66 HOH HOH . D 4 HOH A 26 626 111 HOH HOH . D 4 HOH A 27 627 28 HOH HOH . D 4 HOH A 28 628 219 HOH HOH . D 4 HOH A 29 629 35 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 26 HOH HOH . D 4 HOH A 32 632 142 HOH HOH . D 4 HOH A 33 633 112 HOH HOH . D 4 HOH A 34 634 207 HOH HOH . D 4 HOH A 35 635 40 HOH HOH . D 4 HOH A 36 636 15 HOH HOH . D 4 HOH A 37 637 3 HOH HOH . D 4 HOH A 38 638 88 HOH HOH . D 4 HOH A 39 639 59 HOH HOH . D 4 HOH A 40 640 33 HOH HOH . D 4 HOH A 41 641 99 HOH HOH . D 4 HOH A 42 642 178 HOH HOH . D 4 HOH A 43 643 60 HOH HOH . D 4 HOH A 44 644 205 HOH HOH . D 4 HOH A 45 645 193 HOH HOH . D 4 HOH A 46 646 64 HOH HOH . D 4 HOH A 47 647 54 HOH HOH . D 4 HOH A 48 648 168 HOH HOH . D 4 HOH A 49 649 71 HOH HOH . D 4 HOH A 50 650 24 HOH HOH . D 4 HOH A 51 651 130 HOH HOH . D 4 HOH A 52 652 83 HOH HOH . D 4 HOH A 53 653 161 HOH HOH . D 4 HOH A 54 654 37 HOH HOH . D 4 HOH A 55 655 169 HOH HOH . D 4 HOH A 56 656 42 HOH HOH . D 4 HOH A 57 657 95 HOH HOH . D 4 HOH A 58 658 27 HOH HOH . D 4 HOH A 59 659 67 HOH HOH . D 4 HOH A 60 660 136 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 22 HOH HOH . D 4 HOH A 63 663 215 HOH HOH . D 4 HOH A 64 664 74 HOH HOH . D 4 HOH A 65 665 162 HOH HOH . D 4 HOH A 66 666 51 HOH HOH . D 4 HOH A 67 667 195 HOH HOH . D 4 HOH A 68 668 90 HOH HOH . D 4 HOH A 69 669 108 HOH HOH . D 4 HOH A 70 670 165 HOH HOH . D 4 HOH A 71 671 79 HOH HOH . D 4 HOH A 72 672 103 HOH HOH . D 4 HOH A 73 673 121 HOH HOH . D 4 HOH A 74 674 55 HOH HOH . D 4 HOH A 75 675 128 HOH HOH . D 4 HOH A 76 676 10 HOH HOH . D 4 HOH A 77 677 208 HOH HOH . D 4 HOH A 78 678 13 HOH HOH . D 4 HOH A 79 679 119 HOH HOH . D 4 HOH A 80 680 176 HOH HOH . D 4 HOH A 81 681 122 HOH HOH . D 4 HOH A 82 682 197 HOH HOH . D 4 HOH A 83 683 214 HOH HOH . D 4 HOH A 84 684 81 HOH HOH . D 4 HOH A 85 685 113 HOH HOH . D 4 HOH A 86 686 218 HOH HOH . D 4 HOH A 87 687 36 HOH HOH . D 4 HOH A 88 688 140 HOH HOH . D 4 HOH A 89 689 58 HOH HOH . D 4 HOH A 90 690 164 HOH HOH . D 4 HOH A 91 691 77 HOH HOH . D 4 HOH A 92 692 17 HOH HOH . D 4 HOH A 93 693 94 HOH HOH . D 4 HOH A 94 694 170 HOH HOH . D 4 HOH A 95 695 106 HOH HOH . D 4 HOH A 96 696 47 HOH HOH . D 4 HOH A 97 697 158 HOH HOH . D 4 HOH A 98 698 85 HOH HOH . D 4 HOH A 99 699 191 HOH HOH . D 4 HOH A 100 700 8 HOH HOH . D 4 HOH A 101 701 185 HOH HOH . D 4 HOH A 102 702 174 HOH HOH . D 4 HOH A 103 703 97 HOH HOH . D 4 HOH A 104 704 135 HOH HOH . D 4 HOH A 105 705 104 HOH HOH . D 4 HOH A 106 706 173 HOH HOH . D 4 HOH A 107 707 46 HOH HOH . D 4 HOH A 108 708 32 HOH HOH . D 4 HOH A 109 709 11 HOH HOH . D 4 HOH A 110 710 194 HOH HOH . D 4 HOH A 111 711 179 HOH HOH . D 4 HOH A 112 712 9 HOH HOH . D 4 HOH A 113 713 167 HOH HOH . D 4 HOH A 114 714 114 HOH HOH . D 4 HOH A 115 715 190 HOH HOH . D 4 HOH A 116 716 171 HOH HOH . D 4 HOH A 117 717 196 HOH HOH . D 4 HOH A 118 718 93 HOH HOH . D 4 HOH A 119 719 132 HOH HOH . D 4 HOH A 120 720 172 HOH HOH . D 4 HOH A 121 721 141 HOH HOH . D 4 HOH A 122 722 155 HOH HOH . D 4 HOH A 123 723 70 HOH HOH . D 4 HOH A 124 724 184 HOH HOH . D 4 HOH A 125 725 44 HOH HOH . D 4 HOH A 126 726 7 HOH HOH . D 4 HOH A 127 727 78 HOH HOH . D 4 HOH A 128 728 68 HOH HOH . D 4 HOH A 129 729 126 HOH HOH . D 4 HOH A 130 730 29 HOH HOH . D 4 HOH A 131 731 107 HOH HOH . D 4 HOH A 132 732 19 HOH HOH . D 4 HOH A 133 733 69 HOH HOH . D 4 HOH A 134 734 118 HOH HOH . D 4 HOH A 135 735 14 HOH HOH . D 4 HOH A 136 736 144 HOH HOH . D 4 HOH A 137 737 76 HOH HOH . D 4 HOH A 138 738 145 HOH HOH . D 4 HOH A 139 739 18 HOH HOH . D 4 HOH A 140 740 146 HOH HOH . D 4 HOH A 141 741 101 HOH HOH . D 4 HOH A 142 742 25 HOH HOH . D 4 HOH A 143 743 49 HOH HOH . D 4 HOH A 144 744 12 HOH HOH . D 4 HOH A 145 745 80 HOH HOH . D 4 HOH A 146 746 86 HOH HOH . D 4 HOH A 147 747 21 HOH HOH . D 4 HOH A 148 748 16 HOH HOH . D 4 HOH A 149 749 43 HOH HOH . D 4 HOH A 150 750 210 HOH HOH . D 4 HOH A 151 751 31 HOH HOH . D 4 HOH A 152 752 91 HOH HOH . D 4 HOH A 153 753 187 HOH HOH . D 4 HOH A 154 754 201 HOH HOH . D 4 HOH A 155 755 189 HOH HOH . D 4 HOH A 156 756 98 HOH HOH . D 4 HOH A 157 757 75 HOH HOH . D 4 HOH A 158 758 143 HOH HOH . D 4 HOH A 159 759 50 HOH HOH . D 4 HOH A 160 760 151 HOH HOH . D 4 HOH A 161 761 109 HOH HOH . D 4 HOH A 162 762 202 HOH HOH . D 4 HOH A 163 763 182 HOH HOH . D 4 HOH A 164 764 129 HOH HOH . D 4 HOH A 165 765 115 HOH HOH . D 4 HOH A 166 766 192 HOH HOH . D 4 HOH A 167 767 159 HOH HOH . D 4 HOH A 168 768 1 HOH HOH . D 4 HOH A 169 769 96 HOH HOH . D 4 HOH A 170 770 175 HOH HOH . D 4 HOH A 171 771 213 HOH HOH . D 4 HOH A 172 772 160 HOH HOH . D 4 HOH A 173 773 188 HOH HOH . D 4 HOH A 174 774 110 HOH HOH . D 4 HOH A 175 775 180 HOH HOH . D 4 HOH A 176 776 177 HOH HOH . D 4 HOH A 177 777 209 HOH HOH . D 4 HOH A 178 778 134 HOH HOH . D 4 HOH A 179 779 204 HOH HOH . D 4 HOH A 180 780 166 HOH HOH . D 4 HOH A 181 781 199 HOH HOH . D 4 HOH A 182 782 125 HOH HOH . D 4 HOH A 183 783 217 HOH HOH . D 4 HOH A 184 784 198 HOH HOH . D 4 HOH A 185 785 212 HOH HOH . D 4 HOH A 186 786 203 HOH HOH . D 4 HOH A 187 787 45 HOH HOH . D 4 HOH A 188 788 200 HOH HOH . D 4 HOH A 189 789 216 HOH HOH . E 4 HOH B 1 801 147 HOH HOH . E 4 HOH B 2 802 65 HOH HOH . E 4 HOH B 3 803 56 HOH HOH . E 4 HOH B 4 804 4 HOH HOH . E 4 HOH B 5 805 53 HOH HOH . E 4 HOH B 6 806 138 HOH HOH . E 4 HOH B 7 807 148 HOH HOH . E 4 HOH B 8 808 63 HOH HOH . E 4 HOH B 9 809 41 HOH HOH . E 4 HOH B 10 810 127 HOH HOH . E 4 HOH B 11 811 38 HOH HOH . E 4 HOH B 12 812 52 HOH HOH . E 4 HOH B 13 813 84 HOH HOH . E 4 HOH B 14 814 120 HOH HOH . E 4 HOH B 15 815 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 -3.712 7.961 35.222 1 19 ? N SAH 501 A 1 HETATM 2 C CA SAH . . . C 3 -4.309 8.406 33.924 1 18.14 ? CA SAH 501 A 1 HETATM 3 C CB SAH . . . C 3 -3.269 9.047 32.983 1 17.89 ? CB SAH 501 A 1 HETATM 4 C CG SAH . . . C 3 -2 8.234 32.712 1 17.31 ? CG SAH 501 A 1 HETATM 5 S SD SAH . . . C 3 -1.123 8.825 31.288 1 17.76 ? SD SAH 501 A 1 HETATM 6 C C SAH . . . C 3 -5.018 7.252 33.276 1 18.44 ? C SAH 501 A 1 HETATM 7 O O SAH . . . C 3 -5.74 7.477 32.298 1 18.4 ? O SAH 501 A 1 HETATM 8 O OXT SAH . . . C 3 -4.939 6.087 33.733 1 18.31 ? OXT SAH 501 A 1 HETATM 9 C C5' SAH . . . C 3 0.192 9.793 31.969 1 17.23 ? C5' SAH 501 A 1 HETATM 10 C C4' SAH . . . C 3 -0.3 11.203 32.288 1 17.45 ? C4' SAH 501 A 1 HETATM 11 O O4' SAH . . . C 3 0.765 11.956 32.851 1 17.73 ? O4' SAH 501 A 1 HETATM 12 C C3' SAH . . . C 3 -0.752 12.008 31.076 1 17.31 ? C3' SAH 501 A 1 HETATM 13 O O3' SAH . . . C 3 -2.075 12.51 31.327 1 17.02 ? O3' SAH 501 A 1 HETATM 14 C C2' SAH . . . C 3 0.306 13.087 30.912 1 17.14 ? C2' SAH 501 A 1 HETATM 15 O O2' SAH . . . C 3 -0.181 14.309 30.401 1 17.55 ? O2' SAH 501 A 1 HETATM 16 C C1' SAH . . . C 3 0.737 13.29 32.336 1 17.68 ? C1' SAH 501 A 1 HETATM 17 N N9 SAH . . . C 3 2.098 13.752 32.605 1 17.86 ? N9 SAH 501 A 1 HETATM 18 C C8 SAH . . . C 3 3.207 13.54 31.88 1 18.02 ? C8 SAH 501 A 1 HETATM 19 N N7 SAH . . . C 3 4.284 14.058 32.514 1 17.41 ? N7 SAH 501 A 1 HETATM 20 C C5 SAH . . . C 3 3.851 14.559 33.681 1 17.68 ? C5 SAH 501 A 1 HETATM 21 C C6 SAH . . . C 3 4.471 15.224 34.83 1 18.03 ? C6 SAH 501 A 1 HETATM 22 N N6 SAH . . . C 3 5.803 15.421 34.81 1 17.82 ? N6 SAH 501 A 1 HETATM 23 N N1 SAH . . . C 3 3.671 15.602 35.857 1 18.67 ? N1 SAH 501 A 1 HETATM 24 C C2 SAH . . . C 3 2.328 15.386 35.863 1 18.52 ? C2 SAH 501 A 1 HETATM 25 N N3 SAH . . . C 3 1.697 14.768 34.84 1 17.91 ? N3 SAH 501 A 1 HETATM 26 C C4 SAH . . . C 3 2.402 14.358 33.747 1 17.94 ? C4 SAH 501 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #