data_5ZQ4 # _model_server_result.job_id '_EsMh45jWAvQkvPjgN2JLQ' _model_server_result.datetime_utc '2024-11-04 22:58:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5zq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5ZQ4 # _exptl.entry_id 5ZQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.22 _cell.angle_gamma 90 _cell.entry_id 5ZQ4 _cell.length_a 95.417 _cell.length_b 55.384 _cell.length_c 98.435 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5ZQ4 _atom_sites.fract_transf_matrix[1][1] 0.01048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003861 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AMP B 1 601 1 AMP AMP . F 3 AMP A 1 601 2 AMP AMP . G 4 HOH B 1 701 87 HOH HOH . G 4 HOH B 2 702 79 HOH HOH . G 4 HOH B 3 703 101 HOH HOH . G 4 HOH B 4 704 28 HOH HOH . G 4 HOH B 5 705 107 HOH HOH . G 4 HOH B 6 706 96 HOH HOH . G 4 HOH B 7 707 83 HOH HOH . G 4 HOH B 8 708 63 HOH HOH . G 4 HOH B 9 709 22 HOH HOH . G 4 HOH B 10 710 67 HOH HOH . G 4 HOH B 11 711 62 HOH HOH . G 4 HOH B 12 712 18 HOH HOH . G 4 HOH B 13 713 59 HOH HOH . G 4 HOH B 14 714 23 HOH HOH . G 4 HOH B 15 715 55 HOH HOH . G 4 HOH B 16 716 9 HOH HOH . G 4 HOH B 17 717 51 HOH HOH . G 4 HOH B 18 718 4 HOH HOH . G 4 HOH B 19 719 1 HOH HOH . G 4 HOH B 20 720 97 HOH HOH . G 4 HOH B 21 721 2 HOH HOH . G 4 HOH B 22 722 25 HOH HOH . G 4 HOH B 23 723 31 HOH HOH . G 4 HOH B 24 724 58 HOH HOH . G 4 HOH B 25 725 92 HOH HOH . G 4 HOH B 26 726 64 HOH HOH . G 4 HOH B 27 727 14 HOH HOH . G 4 HOH B 28 728 84 HOH HOH . G 4 HOH B 29 729 21 HOH HOH . G 4 HOH B 30 730 20 HOH HOH . G 4 HOH B 31 731 90 HOH HOH . G 4 HOH B 32 732 32 HOH HOH . G 4 HOH B 33 733 40 HOH HOH . G 4 HOH B 34 734 46 HOH HOH . G 4 HOH B 35 735 60 HOH HOH . G 4 HOH B 36 736 52 HOH HOH . G 4 HOH B 37 737 73 HOH HOH . G 4 HOH B 38 738 3 HOH HOH . G 4 HOH B 39 739 36 HOH HOH . G 4 HOH B 40 740 29 HOH HOH . G 4 HOH B 41 741 77 HOH HOH . G 4 HOH B 42 742 27 HOH HOH . G 4 HOH B 43 743 49 HOH HOH . G 4 HOH B 44 744 75 HOH HOH . G 4 HOH B 45 745 13 HOH HOH . G 4 HOH B 46 746 37 HOH HOH . G 4 HOH B 47 747 38 HOH HOH . G 4 HOH B 48 748 70 HOH HOH . G 4 HOH B 49 749 66 HOH HOH . G 4 HOH B 50 750 81 HOH HOH . G 4 HOH B 51 751 74 HOH HOH . G 4 HOH B 52 752 45 HOH HOH . G 4 HOH B 53 753 48 HOH HOH . G 4 HOH B 54 754 108 HOH HOH . G 4 HOH B 55 755 7 HOH HOH . G 4 HOH B 56 756 98 HOH HOH . G 4 HOH B 57 757 42 HOH HOH . G 4 HOH B 58 758 53 HOH HOH . G 4 HOH B 59 759 34 HOH HOH . G 4 HOH B 60 760 16 HOH HOH . G 4 HOH B 61 761 54 HOH HOH . G 4 HOH B 62 762 12 HOH HOH . G 4 HOH B 63 763 109 HOH HOH . G 4 HOH B 64 764 115 HOH HOH . G 4 HOH B 65 765 114 HOH HOH . G 4 HOH B 66 766 113 HOH HOH . G 4 HOH B 67 767 102 HOH HOH . H 4 HOH C 1 101 103 HOH HOH . H 4 HOH C 2 102 39 HOH HOH . H 4 HOH C 3 103 33 HOH HOH . H 4 HOH C 4 104 95 HOH HOH . I 4 HOH A 1 701 61 HOH HOH . I 4 HOH A 2 702 106 HOH HOH . I 4 HOH A 3 703 71 HOH HOH . I 4 HOH A 4 704 68 HOH HOH . I 4 HOH A 5 705 10 HOH HOH . I 4 HOH A 6 706 11 HOH HOH . I 4 HOH A 7 707 80 HOH HOH . I 4 HOH A 8 708 86 HOH HOH . I 4 HOH A 9 709 17 HOH HOH . I 4 HOH A 10 710 15 HOH HOH . I 4 HOH A 11 711 94 HOH HOH . I 4 HOH A 12 712 57 HOH HOH . I 4 HOH A 13 713 69 HOH HOH . I 4 HOH A 14 714 8 HOH HOH . I 4 HOH A 15 715 85 HOH HOH . I 4 HOH A 16 716 110 HOH HOH . I 4 HOH A 17 717 44 HOH HOH . I 4 HOH A 18 718 19 HOH HOH . I 4 HOH A 19 719 91 HOH HOH . I 4 HOH A 20 720 76 HOH HOH . I 4 HOH A 21 721 30 HOH HOH . I 4 HOH A 22 722 89 HOH HOH . I 4 HOH A 23 723 99 HOH HOH . I 4 HOH A 24 724 26 HOH HOH . I 4 HOH A 25 725 5 HOH HOH . I 4 HOH A 26 726 35 HOH HOH . I 4 HOH A 27 727 93 HOH HOH . I 4 HOH A 28 728 112 HOH HOH . I 4 HOH A 29 729 56 HOH HOH . I 4 HOH A 30 730 41 HOH HOH . I 4 HOH A 31 731 6 HOH HOH . I 4 HOH A 32 732 43 HOH HOH . I 4 HOH A 33 733 47 HOH HOH . I 4 HOH A 34 734 100 HOH HOH . I 4 HOH A 35 735 24 HOH HOH . I 4 HOH A 36 736 78 HOH HOH . I 4 HOH A 37 737 82 HOH HOH . I 4 HOH A 38 738 117 HOH HOH . I 4 HOH A 39 739 111 HOH HOH . I 4 HOH A 40 740 116 HOH HOH . I 4 HOH A 41 741 105 HOH HOH . J 4 HOH D 1 101 65 HOH HOH . J 4 HOH D 2 102 50 HOH HOH . J 4 HOH D 3 103 104 HOH HOH . J 4 HOH D 4 104 88 HOH HOH . J 4 HOH D 5 105 72 HOH HOH . J 4 HOH D 6 106 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 3 27.776 -3.265 -5.231 1 74.71 ? P AMP 601 B 1 HETATM 2 O O1P AMP . . . E 3 27.107 -3.334 -6.586 1 68.93 ? O1P AMP 601 B 1 HETATM 3 O O2P AMP . . . E 3 27.862 -1.853 -4.683 1 74.12 ? O2P AMP 601 B 1 HETATM 4 O O3P AMP . . . E 3 29.033 -4.081 -5.099 1 77.54 ? O3P AMP 601 B 1 HETATM 5 O O5' AMP . . . E 3 26.827 -3.996 -4.173 1 76.68 ? O5' AMP 601 B 1 HETATM 6 C C5' AMP . . . E 3 27.349 -4.541 -2.959 1 68.46 ? C5' AMP 601 B 1 HETATM 7 C C4' AMP . . . E 3 26.24 -4.867 -1.979 1 62.4 ? C4' AMP 601 B 1 HETATM 8 O O4' AMP . . . E 3 25.633 -6.145 -2.32 1 60.74 ? O4' AMP 601 B 1 HETATM 9 C C3' AMP . . . E 3 26.634 -5.047 -0.516 1 54.6 ? C3' AMP 601 B 1 HETATM 10 O O3' AMP . . . E 3 26.856 -3.831 0.173 1 55.79 ? O3' AMP 601 B 1 HETATM 11 C C2' AMP . . . E 3 25.46 -5.845 0.032 1 53.64 ? C2' AMP 601 B 1 HETATM 12 O O2' AMP . . . E 3 24.329 -5.008 0.208 1 50.89 ? O2' AMP 601 B 1 HETATM 13 C C1' AMP . . . E 3 25.174 -6.782 -1.138 1 57.95 ? C1' AMP 601 B 1 HETATM 14 N N9 AMP . . . E 3 25.892 -8.062 -0.979 1 55.74 ? N9 AMP 601 B 1 HETATM 15 C C8 AMP . . . E 3 27.092 -8.351 -1.509 1 56.79 ? C8 AMP 601 B 1 HETATM 16 N N7 AMP . . . E 3 27.463 -9.609 -1.168 1 57.01 ? N7 AMP 601 B 1 HETATM 17 C C5 AMP . . . E 3 26.488 -10.135 -0.411 1 50.49 ? C5 AMP 601 B 1 HETATM 18 C C6 AMP . . . E 3 26.262 -11.428 0.26 1 52.82 ? C6 AMP 601 B 1 HETATM 19 N N6 AMP . . . E 3 27.195 -12.413 0.16 1 51.5 ? N6 AMP 601 B 1 HETATM 20 N N1 AMP . . . E 3 25.105 -11.573 0.963 1 52 ? N1 AMP 601 B 1 HETATM 21 C C2 AMP . . . E 3 24.182 -10.589 1.05 1 49.13 ? C2 AMP 601 B 1 HETATM 22 N N3 AMP . . . E 3 24.329 -9.389 0.453 1 48.86 ? N3 AMP 601 B 1 HETATM 23 C C4 AMP . . . E 3 25.448 -9.114 -0.282 1 49.71 ? C4 AMP 601 B 1 # _model_server_stats.io_time_ms 90 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #