data_5ZQP
#
_model_server_result.job_id            rV0zic6qiKetWsnymd_6sw 
_model_server_result.datetime_utc      '2024-11-19 23:14:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5zqp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1202}' 
#
_entry.id    5ZQP 
#
_exptl.entry_id    5ZQP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.399 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "1'-(4-oxo-3,4,5,6,7,8-hexahydroquinazolin-2-yl)-2H-spiro[1-benzofuran-3,4'-piperidin]-2-one" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ZQP 
_cell.length_a            67.405 
_cell.length_b            67.405 
_cell.length_c            115.092 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ZQP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 1081 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc2 A ND1 HIS 138 A HIS 1084 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc3 A SG CYS 143 A CYS 1089 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 A SG CYS 146 A CYS 1092 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
#
_chem_comp.formula           'C20 H21 N3 O3' 
_chem_comp.formula_weight    351.399 
_chem_comp.id                9H3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "1'-(4-oxo-3,4,5,6,7,8-hexahydroquinazolin-2-yl)-2H-spiro[1-benzofuran-3,4'-piperidin]-2-one" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 C01 9H3 sing 1 n n 
C26 C25 9H3 sing 2 n n 
C01 C02 9H3 sing 3 n n 
C25 C24 9H3 sing 4 n n 
O04 C03 9H3 doub 5 n n 
C02 C03 9H3 sing 6 n n 
C02 C23 9H3 doub 7 n n 
C03 N05 9H3 sing 8 n n 
C24 C23 9H3 sing 9 n n 
C23 N22 9H3 sing 10 n n 
N05 C06 9H3 sing 11 n n 
N22 C06 9H3 doub 12 n n 
C06 N07 9H3 sing 13 n n 
N07 C21 9H3 sing 14 n n 
N07 C08 9H3 sing 15 n n 
C21 C20 9H3 sing 16 n n 
C08 C09 9H3 sing 17 n n 
C20 C10 9H3 sing 18 n n 
C09 C10 9H3 sing 19 n n 
O19 C18 9H3 doub 20 n n 
C10 C18 9H3 sing 21 n n 
C10 C11 9H3 sing 22 n n 
C18 O17 9H3 sing 23 n n 
C11 C12 9H3 sing 24 n y 
C11 C16 9H3 doub 25 n y 
O17 C16 9H3 sing 26 n n 
C12 C13 9H3 doub 27 n y 
C16 C15 9H3 sing 28 n y 
C13 C14 9H3 sing 29 n y 
C15 C14 9H3 doub 30 n y 
C12 H1 9H3 sing 31 n n 
C13 H2 9H3 sing 32 n n 
C14 H3 9H3 sing 33 n n 
C15 H4 9H3 sing 34 n n 
C01 H5 9H3 sing 35 n n 
C01 H6 9H3 sing 36 n n 
C08 H7 9H3 sing 37 n n 
C09 H8 9H3 sing 38 n n 
C20 H9 9H3 sing 39 n n 
C20 H10 9H3 sing 40 n n 
C21 H11 9H3 sing 41 n n 
C21 H12 9H3 sing 42 n n 
C24 H13 9H3 sing 43 n n 
C24 H14 9H3 sing 44 n n 
C25 H15 9H3 sing 45 n n 
C25 H16 9H3 sing 46 n n 
C26 H17 9H3 sing 47 n n 
C26 H18 9H3 sing 48 n n 
N05 H19 9H3 sing 49 n n 
C08 H20 9H3 sing 50 n n 
C09 H21 9H3 sing 51 n n 
#
_atom_sites.entry_id                     5ZQP 
_atom_sites.fract_transf_matrix[1][1]    0.014836 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014836 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008689 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 1201 1201 ZN ZN . 
D 4 9H3 A 1 1202 1202 9H3 9H3 . 
E 5 PO4 A 1 1203 1203 PO4 PO4 . 
F 6 GOL A 1 1204 1204 GOL GOL . 
G 6 GOL B 1 1201 1205 GOL GOL . 
H 7 HOH A 1 1301 1301 HOH HOH . 
H 7 HOH A 2 1302 1303 HOH HOH . 
H 7 HOH A 3 1303 1304 HOH HOH . 
H 7 HOH A 4 1304 1305 HOH HOH . 
H 7 HOH A 5 1305 1306 HOH HOH . 
H 7 HOH A 6 1306 1308 HOH HOH . 
H 7 HOH A 7 1307 1310 HOH HOH . 
H 7 HOH A 8 1308 1311 HOH HOH . 
H 7 HOH A 9 1309 1312 HOH HOH . 
H 7 HOH A 10 1310 1314 HOH HOH . 
H 7 HOH A 11 1311 1315 HOH HOH . 
H 7 HOH A 12 1312 1316 HOH HOH . 
H 7 HOH A 13 1313 1318 HOH HOH . 
H 7 HOH A 14 1314 1320 HOH HOH . 
H 7 HOH A 15 1315 1321 HOH HOH . 
H 7 HOH A 16 1316 1322 HOH HOH . 
H 7 HOH A 17 1317 1324 HOH HOH . 
H 7 HOH A 18 1318 1326 HOH HOH . 
H 7 HOH A 19 1319 1328 HOH HOH . 
H 7 HOH A 20 1320 1329 HOH HOH . 
H 7 HOH A 21 1321 1330 HOH HOH . 
H 7 HOH A 22 1322 1331 HOH HOH . 
H 7 HOH A 23 1323 1332 HOH HOH . 
H 7 HOH A 24 1324 1333 HOH HOH . 
H 7 HOH A 25 1325 1334 HOH HOH . 
H 7 HOH A 26 1326 1335 HOH HOH . 
H 7 HOH A 27 1327 1336 HOH HOH . 
H 7 HOH A 28 1328 1339 HOH HOH . 
H 7 HOH A 29 1329 1340 HOH HOH . 
H 7 HOH A 30 1330 1341 HOH HOH . 
H 7 HOH A 31 1331 1342 HOH HOH . 
H 7 HOH A 32 1332 1343 HOH HOH . 
H 7 HOH A 33 1333 1345 HOH HOH . 
H 7 HOH A 34 1334 1347 HOH HOH . 
H 7 HOH A 35 1335 1348 HOH HOH . 
H 7 HOH A 36 1336 1350 HOH HOH . 
H 7 HOH A 37 1337 1351 HOH HOH . 
H 7 HOH A 38 1338 1352 HOH HOH . 
H 7 HOH A 39 1339 1353 HOH HOH . 
H 7 HOH A 40 1340 1354 HOH HOH . 
H 7 HOH A 41 1341 1357 HOH HOH . 
H 7 HOH A 42 1342 1358 HOH HOH . 
H 7 HOH A 43 1343 1360 HOH HOH . 
H 7 HOH A 44 1344 1361 HOH HOH . 
H 7 HOH A 45 1345 1362 HOH HOH . 
H 7 HOH A 46 1346 1363 HOH HOH . 
H 7 HOH A 47 1347 1364 HOH HOH . 
H 7 HOH A 48 1348 1365 HOH HOH . 
H 7 HOH A 49 1349 1366 HOH HOH . 
H 7 HOH A 50 1350 1367 HOH HOH . 
H 7 HOH A 51 1351 1368 HOH HOH . 
H 7 HOH A 52 1352 1369 HOH HOH . 
H 7 HOH A 53 1353 1370 HOH HOH . 
H 7 HOH A 54 1354 1372 HOH HOH . 
H 7 HOH A 55 1355 1373 HOH HOH . 
H 7 HOH A 56 1356 1374 HOH HOH . 
H 7 HOH A 57 1357 1376 HOH HOH . 
H 7 HOH A 58 1358 1377 HOH HOH . 
H 7 HOH A 59 1359 1378 HOH HOH . 
H 7 HOH A 60 1360 1379 HOH HOH . 
H 7 HOH A 61 1361 1380 HOH HOH . 
H 7 HOH A 62 1362 1381 HOH HOH . 
H 7 HOH A 63 1363 1382 HOH HOH . 
H 7 HOH A 64 1364 1383 HOH HOH . 
H 7 HOH A 65 1365 1384 HOH HOH . 
H 7 HOH A 66 1366 1385 HOH HOH . 
H 7 HOH A 67 1367 1386 HOH HOH . 
H 7 HOH A 68 1368 1387 HOH HOH . 
H 7 HOH A 69 1369 1388 HOH HOH . 
H 7 HOH A 70 1370 1389 HOH HOH . 
H 7 HOH A 71 1371 1390 HOH HOH . 
H 7 HOH A 72 1372 1391 HOH HOH . 
H 7 HOH A 73 1373 1392 HOH HOH . 
H 7 HOH A 74 1374 1393 HOH HOH . 
H 7 HOH A 75 1375 1394 HOH HOH . 
H 7 HOH A 76 1376 1395 HOH HOH . 
H 7 HOH A 77 1377 1396 HOH HOH . 
H 7 HOH A 78 1378 1397 HOH HOH . 
H 7 HOH A 79 1379 1398 HOH HOH . 
H 7 HOH A 80 1380 1399 HOH HOH . 
H 7 HOH A 81 1381 1400 HOH HOH . 
H 7 HOH A 82 1382 1401 HOH HOH . 
H 7 HOH A 83 1383 1402 HOH HOH . 
H 7 HOH A 84 1384 1403 HOH HOH . 
H 7 HOH A 85 1385 1404 HOH HOH . 
H 7 HOH A 86 1386 1405 HOH HOH . 
H 7 HOH A 87 1387 1406 HOH HOH . 
H 7 HOH A 88 1388 1407 HOH HOH . 
H 7 HOH A 89 1389 1408 HOH HOH . 
H 7 HOH A 90 1390 1410 HOH HOH . 
H 7 HOH A 91 1391 1411 HOH HOH . 
H 7 HOH A 92 1392 1412 HOH HOH . 
H 7 HOH A 93 1393 1414 HOH HOH . 
I 7 HOH B 1 1301 1302 HOH HOH . 
I 7 HOH B 2 1302 1307 HOH HOH . 
I 7 HOH B 3 1303 1309 HOH HOH . 
I 7 HOH B 4 1304 1313 HOH HOH . 
I 7 HOH B 5 1305 1317 HOH HOH . 
I 7 HOH B 6 1306 1319 HOH HOH . 
I 7 HOH B 7 1307 1323 HOH HOH . 
I 7 HOH B 8 1308 1325 HOH HOH . 
I 7 HOH B 9 1309 1327 HOH HOH . 
I 7 HOH B 10 1310 1337 HOH HOH . 
I 7 HOH B 11 1311 1338 HOH HOH . 
I 7 HOH B 12 1312 1344 HOH HOH . 
I 7 HOH B 13 1313 1346 HOH HOH . 
I 7 HOH B 14 1314 1349 HOH HOH . 
I 7 HOH B 15 1315 1355 HOH HOH . 
I 7 HOH B 16 1316 1356 HOH HOH . 
I 7 HOH B 17 1317 1359 HOH HOH . 
I 7 HOH B 18 1318 1371 HOH HOH . 
I 7 HOH B 19 1319 1375 HOH HOH . 
I 7 HOH B 20 1320 1409 HOH HOH . 
I 7 HOH B 21 1321 1413 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 9H3 . . . D 4 1.945 -11.857 -7.136 1 27.1 ? C10 9H3 1202 A 1 
HETATM 2 C C11 9H3 . . . D 4 1.899 -11.349 -5.761 1 34.25 ? C11 9H3 1202 A 1 
HETATM 3 C C12 9H3 . . . D 4 2.044 -10.101 -5.218 1 41.48 ? C12 9H3 1202 A 1 
HETATM 4 C C13 9H3 . . . D 4 1.957 -9.931 -3.829 1 44.63 ? C13 9H3 1202 A 1 
HETATM 5 C C14 9H3 . . . D 4 1.73 -11.021 -2.998 1 44.19 ? C14 9H3 1202 A 1 
HETATM 6 C C15 9H3 . . . D 4 1.575 -12.313 -3.517 1 38.92 ? C15 9H3 1202 A 1 
HETATM 7 C C01 9H3 . . . D 4 3.502 -12.605 -15.666 1 22.02 ? C01 9H3 1202 A 1 
HETATM 8 C C02 9H3 . . . D 4 3.205 -12.447 -14.204 1 17.42 ? C02 9H3 1202 A 1 
HETATM 9 C C03 9H3 . . . D 4 1.798 -12.405 -13.769 1 25.34 ? C03 9H3 1202 A 1 
HETATM 10 C C06 9H3 . . . D 4 2.627 -12.14 -11.462 1 29.36 ? C06 9H3 1202 A 1 
HETATM 11 C C08 9H3 . . . D 4 3.59 -11.89 -9.205 1 22.87 ? C08 9H3 1202 A 1 
HETATM 12 C C09 9H3 . . . D 4 3.353 -11.85 -7.699 1 27.9 ? C09 9H3 1202 A 1 
HETATM 13 C C16 9H3 . . . D 4 1.669 -12.418 -4.882 1 32.66 ? C16 9H3 1202 A 1 
HETATM 14 C C18 9H3 . . . D 4 1.701 -13.343 -6.891 1 37.22 ? C18 9H3 1202 A 1 
HETATM 15 C C20 9H3 . . . D 4 0.986 -11.292 -8.111 1 28.74 ? C20 9H3 1202 A 1 
HETATM 16 C C21 9H3 . . . D 4 1.034 -11.916 -9.477 1 22.86 ? C21 9H3 1202 A 1 
HETATM 17 C C23 9H3 . . . D 4 4.162 -12.33 -13.235 1 28.82 ? C23 9H3 1202 A 1 
HETATM 18 C C24 9H3 . . . D 4 5.645 -12.387 -13.613 1 22.62 ? C24 9H3 1202 A 1 
HETATM 19 C C25 9H3 . . . D 4 5.905 -12.97 -15.014 1 20.25 ? C25 9H3 1202 A 1 
HETATM 20 C C26 9H3 . . . D 4 4.977 -12.261 -15.996 1 21.85 ? C26 9H3 1202 A 1 
HETATM 21 N N05 9H3 . . . D 4 1.579 -12.249 -12.37 1 22.91 ? N05 9H3 1202 A 1 
HETATM 22 N N07 9H3 . . . D 4 2.393 -11.982 -10.092 1 25.43 ? N07 9H3 1202 A 1 
HETATM 23 N N22 9H3 . . . D 4 3.907 -12.183 -11.879 1 25.01 ? N22 9H3 1202 A 1 
HETATM 24 O O04 9H3 . . . D 4 0.797 -12.505 -14.472 1 25.4 ? O04 9H3 1202 A 1 
HETATM 25 O O17 9H3 . . . D 4 1.532 -13.636 -5.553 1 35.15 ? O17 9H3 1202 A 1 
HETATM 26 O O19 9H3 . . . D 4 1.664 -14.279 -7.657 1 37.96 ? O19 9H3 1202 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#